View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_low_5 (Length: 448)
Name: NF8751_low_5
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_low_5 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Original strand, 14541780 - 14542184
Alignment:
| Q |
19 |
caatgcaccaattgcagtacaatagagttgtaattcgttagttatgagtatgttgcatttttgttattaagtgtaatatttcaaacactgaatgatcatt |
118 |
Q |
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| T |
14541780 |
caatgcaccaattgcagtacaatagagttgtaattcgttagttatgagtatgttgcattttcgttattaagtgtaatatttcaaacaccgaatgatcatt |
14541879 |
T |
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| Q |
119 |
tttattcttgttttacacaaaaccggcttaaaattagttagtttgacataaaactggcttaaaatggtgcaaaaaattgatttacaaaacactgttttaa |
218 |
Q |
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| T |
14541880 |
tttattcttgttttacacaaaaccggcttaaaattagttagtttgacataaaactggcttaaaatggtgcaaaaaattgatttacaaaacactgttttaa |
14541979 |
T |
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| Q |
219 |
gttgattgtaacaaatagcttaaaatgtatatgcggtgctattaaaattaagttgaaaatgttatatgttttaagctaattatttagacatccaacttca |
318 |
Q |
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| T |
14541980 |
gttgattgtaacaaatagcttaaaatgtatatgcggtgctattaaaattaagttgaaaatgttatatgttttaagctaattatttagacatccaacttca |
14542079 |
T |
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| Q |
319 |
aacctgttaaacatggtttataaattcgtgtaagttatgtttctgtaatttattcctcaactctcgattgcaaaagaaacccttgttcctaccatcgtat |
418 |
Q |
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| T |
14542080 |
aacctgttaaacatggtttataaattcgtgtaagttatgtttctgtaatttattcctcaactctcgattgcaaaagaaacccttgttcctaccatcgtat |
14542179 |
T |
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| Q |
419 |
tccac |
423 |
Q |
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| T |
14542180 |
tccac |
14542184 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 18177442 - 18177486
Alignment:
| Q |
19 |
caatgcaccaattgcagtacaatagagttgtaattcgttagttat |
63 |
Q |
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| T |
18177442 |
caatgcaccaattgcagtacaatagagttgtaattcattagttat |
18177486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 13216652 - 13216608
Alignment:
| Q |
19 |
caatgcaccaattgcagtacaatagagttgtaattcgttagttat |
63 |
Q |
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| T |
13216652 |
caatgcaccaattgcagtacaatagagttgtaattcattagttat |
13216608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 241057 - 241101
Alignment:
| Q |
19 |
caatgcaccaattgcagtacaatagagttgtaattcgttagttat |
63 |
Q |
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| T |
241057 |
caatgcaccaattgcagtacaatagagttgtaattcactagttat |
241101 |
T |
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