View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_low_6 (Length: 430)
Name: NF8751_low_6
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 193 - 417
Target Start/End: Complemental strand, 54984411 - 54984187
Alignment:
| Q |
193 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtagggagaaatctttggatacaaaatagcataatctttcaca |
292 |
Q |
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| T |
54984411 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtaaggagaaatctttggatacaaaatagcataatctttcaca |
54984312 |
T |
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| Q |
293 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54984311 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
54984212 |
T |
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| Q |
393 |
ccttttctgaatctaccactgctct |
417 |
Q |
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||||||||||||||||||||||||| |
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| T |
54984211 |
ccttttctgaatctaccactgctct |
54984187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 54984586 - 54984473
Alignment:
| Q |
18 |
aaaaagtacataacaacttgcaccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggt |
117 |
Q |
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| T |
54984586 |
aaaaagtacataacaacttgcgccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggt |
54984487 |
T |
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| Q |
118 |
accaccaacacgaa |
131 |
Q |
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| T |
54984486 |
accaccaacacgaa |
54984473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 51065490 - 51065545
Alignment:
| Q |
52 |
catccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactca |
108 |
Q |
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| T |
51065490 |
catccaaaagaaaattcaaacaccatgcaatataaacactgat-aaaacacgactca |
51065545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 276 - 417
Target Start/End: Original strand, 31320337 - 31320478
Alignment:
| Q |
276 |
tagcataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcat |
375 |
Q |
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||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||| || ||| |
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| T |
31320337 |
tagcataatcttttactggtttgtataatactggccttgactcgttcactagtttgtcaatcggttgaatctctttctctgaatttgggcggcaaaacat |
31320436 |
T |
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| Q |
376 |
aactactgtgagcctttccttttctgaatctaccactgctct |
417 |
Q |
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| | |||| |||||||||| |||||| || ||||||| |||| |
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| T |
31320437 |
agcaactgagagcctttccctttctgcatttaccactactct |
31320478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 417
Target Start/End: Original strand, 31326377 - 31326514
Alignment:
| Q |
280 |
ataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataact |
379 |
Q |
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||||||||| || | | ||||| ||| |||||||||||| ||||||||||||||||| |||| | ||||||||| |||| |||||| ||| |||| || |
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| T |
31326377 |
ataatcttttactggtctgtatgataatggccttgactcgttcactagtttgtcaatcggttgaatctctttctccgaatctgggcggcataacatagct |
31326476 |
T |
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| Q |
380 |
actgtgagcctttccttttctgaatctaccactgctct |
417 |
Q |
| |
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|||| ||||||| |||||||| || |||||||||||| |
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| T |
31326477 |
actgagagccttgccttttcttcatttaccactgctct |
31326514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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