View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8751_low_8 (Length: 360)

Name: NF8751_low_8
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8751_low_8
NF8751_low_8
[»] chr5 (3 HSPs)
chr5 (161-260)||(27424212-27424311)
chr5 (19-94)||(27424070-27424145)
chr5 (287-340)||(27424340-27424393)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 27424212 - 27424311
Alignment:
Q  161 tgagttaggtcgtcattgtataattgaggaagcacctaacataattttgagtctatgttagacattgtatataatattacaaaattaacaagctgttcac 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27424212 tgagttaggtcgtcattgtataattgaggaagcacctaacataattttgagtctatgttagacattgtatataatattacaaaattaacaagctgttcac 27424311  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 27424070 - 27424145
Alignment:
Q  19 ctaaattgtagcatcccgtcttcttgaaagaatcattctgttaatttaccaaaagcttttatatgctatcaagtta 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27424070 ctaaattgtagcatcccgtcttcttgaaagaatcattctgttaatttaccaaaagcttttatatgccatcaagtta 27424145  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 27424340 - 27424393
Alignment:
Q  287 ttacataaatttatactcacatgccatccaattgtgattatattagaattatct 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27424340 ttacataaatttatactcacatgccatccaattgtgattatattagaattatct 27424393  T

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