View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8752_high_12 (Length: 317)

Name: NF8752_high_12
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8752_high_12
NF8752_high_12
[»] chr3 (1 HSPs)
chr3 (12-317)||(34685343-34685658)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 34685343 - 34685658
Alignment:
Q  12 ataatactcctctttaattatactcatatttttctctt--aggnnnnnnnntactcatgttttttattcatttatttcagtccactattccccaatggag 109  Q
    |||| ||||||||||||||||||||||||||||||||   ||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34685343 ataacactcctctttaattatactcatatttttctctctcagaaaaaaaaatactcatgttttttattcatttatttcagtccactattccccaatggag 34685442  T
Q  110 ttgccatagttcaactaaacttattcaacttatgatggttccggtcatatttaaattgggacactctcaatcaattcaaatttaactaaaattcagcaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34685443 ttgccatagttcaactaaacttattcaacttatgatggttccggtcatatttaaattgggacactctcaatcaattcaactttaactaaaattcagcaat 34685542  T
Q  210 aatttgaattctaaaatgtgattccatacatcttatacatct--------atgaccaaaattgtgttgcagccgttcacttctcaacacacacacaacta 301  Q
    || ||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34685543 aacttgaattctaacatgtgattccatacatcttatacatctacacatgaatgaccaaaattgtgttgcaaccgttcacttctcaacacacacacaacta 34685642  T
Q  302 tattattaccagcagc 317  Q
    ||||||||||||||||    
T  34685643 tattattaccagcagc 34685658  T

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