View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8752_high_17 (Length: 245)
Name: NF8752_high_17
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 40961110 - 40960885
Alignment:
| Q |
1 |
tcacaagaagcagaccaagaatgaccacaggcgatacattccagctgaacaagcagagcaacaatcaaaacccgggtcattaaaagtgcattagatgagt |
100 |
Q |
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| T |
40961110 |
tcacaagaggcagaccaagaatgaccacaggcgatacattccagctgaacaagcagagcaacaatcaaaacccgggtcattaaaagtgcattagatgagt |
40961011 |
T |
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| Q |
101 |
ttttaaattttaattaaatatcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcgcgaataatatcccttacacccactttacgct |
200 |
Q |
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| T |
40961010 |
ttttaaattttaattaaatatcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcacgaataatatcccttacacccactttacgct |
40960911 |
T |
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| Q |
201 |
ctgtgcaaagtttgcaactagcatct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40960910 |
ctgtgcaaagtttgcaactagcatct |
40960885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 40947807 - 40947740
Alignment:
| Q |
116 |
aaatatcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcgcgaataatatccct |
183 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||| |||||| || ||||||||||| |
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| T |
40947807 |
aaatatcagtaaagcattaaggcgctgaccatatatcggtcagcatatcctgcacggataatatccct |
40947740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40947916 - 40947852
Alignment:
| Q |
1 |
tcacaagaagcagaccaagaatgaccacaggcgatacattccagctgaacaagcagagcaacaat |
65 |
Q |
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|||| ||| |||||||| ||||||||||| || || ||||||||||||||||||||||||| ||| |
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| T |
40947916 |
tcacgagaggcagaccaggaatgaccacaagctatgcattccagctgaacaagcagagcaaaaat |
40947852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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