View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8752_high_3 (Length: 612)
Name: NF8752_high_3
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 37900003 - 37899401
Alignment:
| Q |
1 |
aatataatatttgtttttatcatacataaaagtctattgatacggttcattatttgttaggttcaagctgcatgtcattgtgatggacgatacagggtcc |
100 |
Q |
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||||||||| ||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37900003 |
aatataataattgtttttatcatacgtagaagtttattgatacggttgattatttgttaggttcaagctgcatgtcattgtgatggacgatacagggtca |
37899904 |
T |
|
| Q |
101 |
gctacctttgttctttttgatcgccaggtgacacggtttattgggcgtaatgtgcaagacctgatcaatgaacatgacaaggtagtggataaatgcatgg |
200 |
Q |
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|||| |||||||||||||||||||| ||||| | |||||||||||||||||||| ||| | |||||||||||||| |||||||||||||| ||||||| |
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| T |
37899903 |
actacttttgttctttttgatcgccaagtgacgcaatttattgggcgtaatgtgcaggacttaatcaatgaacatgagaaggtagtggataattgcatgg |
37899804 |
T |
|
| Q |
201 |
tctataaacgaggtttattttt---------gcaatgaatttccaactaacatcttctaaattttcaatagggagaaggagcctgtgattatcctcctga |
291 |
Q |
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|||||| | ||||||| ||||| |||| |||||| ||||||||||||||| | ||||||| |||||||||| || ||||||||||||||| |
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| T |
37899803 |
tctatatatgaggttttttttttttttttatgcaaggaattttcaactaacatcttctgatttttcaacagggagaaggcaccaatgattatcctcctga |
37899704 |
T |
|
| Q |
292 |
ttttaatgtgcttattgacaagcaagttcttttcaaggttgaggttggtgaaggaaatgtcgtgaagaagtataggaattatatcgttaagaaggcatct |
391 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37899703 |
ttttaatgtgcttattgaaaagcaagttcttttcaaggttgaggttggtgaaggaaatgtcgtgaagaagtataggaattatgccgttaagaaggcatct |
37899604 |
T |
|
| Q |
392 |
gacgatgttggtgtcatcgaacaattcatatctaagtataatttggaggtagttcatatctgatattacaatctcaaaactattttagaataattaatgt |
491 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| |
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| T |
37899603 |
gacgatgttggtgtcatcgaacagttcatgtctaagtataatttggaggtagttcatatctgatattacaatctcataactgttttagattaattaatgt |
37899504 |
T |
|
| Q |
492 |
acataacgaaatcattctatgactaattggatcttttgttgatgtatgtgtgatagaaacccaacgatggatctgttgaagagcttagtctgaatggtgt |
591 |
Q |
| |
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||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37899503 |
tcataaggaaatcatcctatgactaattggttcttttgttgatgtatgtgtgatagaaacccaacgatggatctgttgaagagcttagtgtgaatggtgt |
37899404 |
T |
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| Q |
592 |
tgc |
594 |
Q |
| |
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||| |
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| T |
37899403 |
tgc |
37899401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 18208765 - 18209380
Alignment:
| Q |
1 |
aatataatatttgtttttatcatacataaaagtctattgatacggttcattatttgttaggttcaagctgcatgtcattgtgatggacgatacagggtcc |
100 |
Q |
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||||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18208765 |
aatataatatttgtttttatcatacgtagaagtttattgatacggttgattatttgttaggttcaagctgcatgtcattgtgatggacgatacagggtcc |
18208864 |
T |
|
| Q |
101 |
gctacctttgttctttttgatcgccaggtgacacggtttattgggcgtaatgtgcaagacctgatcaatgaacatgacaaggtagtggataaatgcatgg |
200 |
Q |
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||||| |||||||||||||||||||| ||||| | |||||||||||||||||||| ||| | |||||||||||||| |||||||||||||| |||||| |
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| T |
18208865 |
gctacttttgttctttttgatcgccaagtgacgcaatttattgggcgtaatgtgcaggacttaatcaatgaacatgagaaggtagtggataattgcatga |
18208964 |
T |
|
| Q |
201 |
tctataaacgaggtttattttt----------------------gcaatgaatttccaactaacatcttctaaattttcaatagggagaaggagcctgtg |
278 |
Q |
| |
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|||||| | ||||||| ||||| |||| |||||| ||||||||||||||| | ||||||| |||||||||| || || |
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| T |
18208965 |
tctatatatgaggtttttttttttttttttttttttttttttatgcaaggaattttcaactaacatcttctgatttttcaacagggagaaggcaccaatg |
18209064 |
T |
|
| Q |
279 |
attatcctcctgattttaatgtgcttattgacaagcaagttcttttcaaggttgaggttggtgaaggaaatgtcgtgaagaagtataggaattatatcgt |
378 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
18209065 |
attatcctcctgattttaatgtgcttattgaaaagcaagttcttttcaaggttgaggttgatgaaggaaatgtcgtgaagaagtataggaattatgccgt |
18209164 |
T |
|
| Q |
379 |
taagaaggcatctgacgatgttggtgtcatcgaacaattcatatctaagtataatttggaggtagttcatatctgatattacaatctcaaaactatttta |
478 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18209165 |
taagaaggcatctgacgatgttggtgtcatcgaacagttcatgtctaagtataatttggaggtagttcatatctgatattacaatctcataactatttta |
18209264 |
T |
|
| Q |
479 |
gaataattaatgtacataacgaaatcattctatgactaattggatcttttgttgatgtatgtgtgatagaaacccaacgatggatctgttgaagagctta |
578 |
Q |
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|| |||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18209265 |
gattaattaatgttcataaggaaatcatcctatgactaattggttcttttgttgatgtatgtgtgatagaaacccaacgatggatctgttgaagaactta |
18209364 |
T |
|
| Q |
579 |
gtctgaatggtgttgc |
594 |
Q |
| |
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|| ||||||||||||| |
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|
| T |
18209365 |
gtgtgaatggtgttgc |
18209380 |
T |
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