View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8752_high_4 (Length: 583)

Name: NF8752_high_4
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8752_high_4
NF8752_high_4
[»] chr4 (33 HSPs)
chr4 (21-583)||(37179418-37179971)
chr4 (192-310)||(32055337-32055456)
chr4 (192-307)||(39827145-39827261)
chr4 (200-309)||(42370318-42370427)
chr4 (156-309)||(44690222-44690377)
chr4 (21-83)||(37189883-37189945)
chr4 (193-307)||(24369401-24369516)
chr4 (190-305)||(50343831-50343946)
chr4 (214-302)||(44670849-44670937)
chr4 (230-309)||(53737829-53737908)
chr4 (163-334)||(41370136-41370303)
chr4 (163-305)||(50086376-50086518)
chr4 (211-309)||(23016238-23016336)
chr4 (219-305)||(41468080-41468166)
chr4 (192-301)||(10095637-10095746)
chr4 (163-306)||(47560621-47560763)
chr4 (214-306)||(50774956-50775048)
chr4 (190-305)||(28005238-28005353)
chr4 (337-403)||(37187489-37187555)
chr4 (163-280)||(24324196-24324313)
chr4 (202-306)||(54700851-54700953)
chr4 (233-309)||(53919860-53919936)
chr4 (211-289)||(16822280-16822358)
chr4 (222-280)||(33982446-33982504)
chr4 (337-395)||(37181865-37181923)
chr4 (219-289)||(49144775-49144845)
chr4 (237-278)||(2063498-2063539)
chr4 (193-306)||(53261553-53261666)
chr4 (229-309)||(31871089-31871169)
chr4 (230-306)||(41956465-41956541)
chr4 (211-306)||(42956987-42957083)
chr4 (230-309)||(49446628-49446708)
chr4 (230-290)||(50115058-50115118)
[»] chr1 (34 HSPs)
chr1 (192-309)||(36321622-36321739)
chr1 (192-310)||(4521005-4521123)
chr1 (202-332)||(4771995-4772121)
chr1 (211-306)||(46370828-46370924)
chr1 (192-307)||(33744132-33744247)
chr1 (211-306)||(36621928-36622023)
chr1 (219-309)||(4039626-4039716)
chr1 (207-306)||(48811928-48812027)
chr1 (163-268)||(15549640-15549745)
chr1 (217-309)||(40570681-40570774)
chr1 (230-301)||(7481409-7481481)
chr1 (163-307)||(17554852-17554996)
chr1 (214-308)||(17112696-17112793)
chr1 (187-306)||(37976823-37976941)
chr1 (192-289)||(26322612-26322710)
chr1 (232-335)||(39973862-39973961)
chr1 (232-305)||(2633027-2633100)
chr1 (192-306)||(8836490-8836602)
chr1 (232-307)||(34445663-34445738)
chr1 (230-309)||(45584531-45584610)
chr1 (163-281)||(50670365-50670482)
chr1 (211-281)||(9221239-9221309)
chr1 (230-308)||(40203113-40203191)
chr1 (232-309)||(3047859-3047936)
chr1 (198-307)||(37705871-37705980)
chr1 (242-309)||(34861259-34861326)
chr1 (211-300)||(28672303-28672393)
chr1 (232-305)||(64863-64936)
chr1 (211-308)||(3755944-3756041)
chr1 (235-268)||(35438069-35438102)
chr1 (192-305)||(46830129-46830242)
chr1 (265-309)||(1048739-1048783)
chr1 (230-306)||(25302067-25302143)
chr1 (193-309)||(48947196-48947312)
[»] chr8 (28 HSPs)
chr8 (190-334)||(7513290-7513430)
chr8 (201-334)||(36348494-36348624)
chr8 (193-307)||(11077913-11078027)
chr8 (192-334)||(39093055-39093194)
chr8 (202-306)||(22209401-22209505)
chr8 (242-309)||(9460450-9460517)
chr8 (157-308)||(27055903-27056054)
chr8 (241-306)||(12782772-12782837)
chr8 (163-251)||(11995160-11995248)
chr8 (192-289)||(2445121-2445218)
chr8 (189-309)||(8108241-8108362)
chr8 (191-280)||(40949379-40949468)
chr8 (262-306)||(11993829-11993873)
chr8 (217-305)||(36924031-36924119)
chr8 (242-309)||(20279602-20279669)
chr8 (242-309)||(21066229-21066296)
chr8 (247-335)||(45368775-45368865)
chr8 (203-309)||(12002259-12002365)
chr8 (192-306)||(24103049-24103162)
chr8 (219-270)||(5217782-5217833)
chr8 (230-269)||(17521038-17521077)
chr8 (237-308)||(31264990-31265061)
chr8 (246-289)||(39333550-39333593)
chr8 (196-306)||(37167016-37167125)
chr8 (163-303)||(5293711-5293852)
chr8 (237-306)||(37564374-37564443)
chr8 (229-306)||(42760181-42760258)
chr8 (230-306)||(7528262-7528338)
[»] chr6 (6 HSPs)
chr6 (192-334)||(30509287-30509425)
chr6 (198-335)||(13070645-13070783)
chr6 (253-305)||(30250611-30250663)
chr6 (163-334)||(13070474-13070646)
chr6 (203-309)||(31702748-31702854)
chr6 (219-309)||(12383042-12383132)
[»] chr3 (31 HSPs)
chr3 (162-289)||(46711882-46712008)
chr3 (157-308)||(37708430-37708580)
chr3 (192-285)||(52309184-52309277)
chr3 (158-303)||(38457179-38457324)
chr3 (211-306)||(39400293-39400388)
chr3 (163-280)||(40546348-40546464)
chr3 (225-307)||(50217002-50217083)
chr3 (164-301)||(46188549-46188685)
chr3 (160-305)||(48322172-48322316)
chr3 (163-309)||(30082849-30082997)
chr3 (270-309)||(52309008-52309047)
chr3 (188-289)||(31901804-31901904)
chr3 (191-280)||(40392413-40392502)
chr3 (223-291)||(24658464-24658532)
chr3 (211-309)||(25461462-25461561)
chr3 (264-306)||(23642744-23642786)
chr3 (229-309)||(1511326-1511407)
chr3 (229-309)||(41571601-41571682)
chr3 (192-284)||(47115310-47115403)
chr3 (220-308)||(8703339-8703427)
chr3 (220-308)||(9055226-9055314)
chr3 (216-280)||(11404727-11404791)
chr3 (230-309)||(18399194-18399274)
chr3 (211-289)||(50368424-50368500)
chr3 (223-334)||(34758900-34759007)
chr3 (237-278)||(43803992-43804033)
chr3 (237-278)||(54290819-54290860)
chr3 (211-284)||(5504809-5504884)
chr3 (188-256)||(31681165-31681233)
chr3 (188-256)||(31917461-31917529)
chr3 (216-280)||(55110048-55110112)
[»] chr2 (33 HSPs)
chr2 (192-308)||(13811033-13811148)
chr2 (207-332)||(18223087-18223208)
chr2 (200-305)||(2825961-2826066)
chr2 (192-305)||(27133072-27133185)
chr2 (192-306)||(16717604-16717718)
chr2 (192-308)||(26408338-26408456)
chr2 (163-309)||(3882608-3882754)
chr2 (155-280)||(2888929-2889054)
chr2 (191-307)||(42924413-42924529)
chr2 (186-301)||(35312103-35312218)
chr2 (211-307)||(8964386-8964482)
chr2 (192-291)||(10824647-10824747)
chr2 (229-308)||(6761760-6761839)
chr2 (253-308)||(45076186-45076241)
chr2 (192-306)||(6797192-6797306)
chr2 (242-306)||(33275940-33276004)
chr2 (192-335)||(14102296-14102436)
chr2 (186-305)||(37617380-37617499)
chr2 (155-309)||(10204149-10204306)
chr2 (200-284)||(35477693-35477778)
chr2 (237-309)||(12075564-12075636)
chr2 (211-267)||(19495237-19495293)
chr2 (222-306)||(44941108-44941192)
chr2 (203-302)||(9153483-9153581)
chr2 (190-289)||(11001439-11001537)
chr2 (230-334)||(31513724-31513823)
chr2 (192-239)||(45303580-45303627)
chr2 (216-278)||(20128353-20128415)
chr2 (192-276)||(27948007-27948092)
chr2 (237-278)||(32859808-32859849)
chr2 (229-309)||(13538388-13538468)
chr2 (163-278)||(16944787-16944902)
chr2 (163-278)||(17015452-17015567)
[»] chr7 (19 HSPs)
chr7 (163-277)||(42890231-42890345)
chr7 (188-301)||(9533512-9533625)
chr7 (192-301)||(42911060-42911169)
chr7 (192-306)||(1360531-1360645)
chr7 (192-306)||(10031918-10032032)
chr7 (211-306)||(33887869-33887963)
chr7 (207-284)||(15995905-15995983)
chr7 (211-277)||(40065799-40065865)
chr7 (211-303)||(3256643-3256736)
chr7 (160-255)||(46127982-46128077)
chr7 (230-334)||(47507581-47507681)
chr7 (223-283)||(44719424-44719484)
chr7 (229-307)||(8920737-8920815)
chr7 (191-284)||(14574749-14574843)
chr7 (217-306)||(676395-676483)
chr7 (202-306)||(28733764-28733869)
chr7 (233-309)||(5248671-5248747)
chr7 (230-309)||(17157804-17157884)
chr7 (241-334)||(28770448-28770537)
[»] chr5 (26 HSPs)
chr5 (192-309)||(32017414-32017532)
chr5 (202-309)||(34032097-34032204)
chr5 (192-281)||(27833287-27833376)
chr5 (160-306)||(10145305-10145451)
chr5 (214-334)||(17098205-17098321)
chr5 (230-301)||(26663635-26663706)
chr5 (230-301)||(26935230-26935301)
chr5 (229-309)||(27016663-27016743)
chr5 (229-306)||(8761922-8761999)
chr5 (194-309)||(779078-779192)
chr5 (211-306)||(36160314-36160409)
chr5 (221-260)||(42338033-42338072)
chr5 (219-334)||(28793306-28793417)
chr5 (240-306)||(39382490-39382556)
chr5 (192-225)||(42337986-42338019)
chr5 (262-306)||(141867-141911)
chr5 (222-334)||(967074-967181)
chr5 (221-305)||(2816174-2816258)
chr5 (222-289)||(1354375-1354442)
chr5 (230-309)||(3263739-3263818)
chr5 (235-306)||(3758195-3758266)
chr5 (230-280)||(7210950-7211000)
chr5 (232-306)||(8247062-8247136)
chr5 (216-309)||(16161411-16161504)
chr5 (232-280)||(14042484-14042532)
chr5 (211-281)||(39099889-39099961)
[»] scaffold0009 (1 HSPs)
scaffold0009 (192-306)||(189064-189178)
[»] scaffold0291 (1 HSPs)
scaffold0291 (195-306)||(11664-11775)
[»] scaffold0111 (1 HSPs)
scaffold0111 (202-289)||(38917-39004)
[»] scaffold0011 (1 HSPs)
scaffold0011 (216-280)||(219211-219275)


Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 21 - 583
Target Start/End: Complemental strand, 37179971 - 37179418
Alignment:
Q  21 cactttcccctccatcccatttttctccccacaaccttcaacctctagtccttaaacatttctagatttgccaagtatcattatatttatgaggtcagct 120  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179971 cactttcccctccattccatttttctccccaccaccttcaacctctagtccttaaacatttctagatttgccaagtatcattatatttatgaggtcagct 37179872  T
Q  121 aaatgcatgcaatagacattgcatgcattatttctttatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| |||||||||||||||||||||||||||||||||||    
T  37179871 aaatgcatgcaatagacattgcatgcattatttctttatggaaaatgttaacgagtgtccccgagacattttttaaggactataaatagcaagtatttat 37179772  T
Q  221 aaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagac 320  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||||| |||||| |||| |    
T  37179771 aaaaatacatataatcaatacattggaaatcgaaatgtttgacttttctaaaaaataattacttgttttggtatgcttaaagagtgtccgccctggaggc 37179672  T
Q  321 actcgttaacaagatgatttctttattgtgtgtgatgaagttgtactaggttacgatgatattagtatctttgttgttttgtatggtgtgagaagcctct 420  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  37179671 actcgttaacaaaatcatttctttattgtgtgtgatgaaattgtactaggttatgatgatattagtatctttgttgtattgtatggtgtgagaagcctct 37179572  T
Q  421 gtaccttgggactattgcttgtacttttgaatttataaatttataatacagatattgaattacacatttggatacaactatcatgacttctttcttcatt 520  Q
    ||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  37179571 gtaccttgggactattgcttgtacttttgaattt--------ataataca-atattgaattacatatttggatacaactatcatgacttctttctttatt 37179481  T
Q  521 taattagccctgttattattgttaacgatatagggttttaatagagaatgatatagggcttca 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37179480 taattagccctgttattattgttaacgatatagggttttaatagagaatgatatagggtttca 37179418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 192 - 310
Target Start/End: Original strand, 32055337 - 32055456
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcg-aaatgtttaacttttttaaagaataattgcttgttttg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||||     
T  32055337 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattggaaatcgaaaatgtttgacttttctaaagaataattgcttgttttt 32055436  T
Q  291 gtatgcttaaagagtgcccg 310  Q
    ||||||||||||||||||||    
T  32055437 gtatgcttaaagagtgcccg 32055456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 192 - 307
Target Start/End: Original strand, 39827145 - 39827261
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataa-ttgcttgttttg 290  Q
    |||||||||||||||||| |||||||||||||| |||| |||||||||  |||| |||| ||||| ||| || |||||||||||||| ||||||||||||    
T  39827145 tttaaggactataaatagtaagtatttataaaattacaagtaatcaatgaattgaaaattgaaatttttgacatttttaaagaataatttgcttgttttg 39827244  T
Q  291 gtatgcttaaagagtgc 307  Q
     ||||||||||||||||    
T  39827245 atatgcttaaagagtgc 39827261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 42370318 - 42370427
Alignment:
Q  200 ctataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgctt 298  Q
    |||||||||||||||||||||||||| | |||||||| ||| ||||| ||||  |||| ||| |||||| ||||||||||||||||||||||||||||||    
T  42370318 ctataaatagcaagtatttataaaaaatgcatgtaattaatgcattgaaaattaaaatattttactttt-taaagaataattgcttgttttggtatgctt 42370416  T
Q  299 aaagagtgccc 309  Q
    |||||||||||    
T  42370417 aaagagtgccc 42370427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 156 - 309
Target Start/End: Original strand, 44690222 - 44690377
Alignment:
Q  156 ttatggaaaatgttaacgagtgctctcgatacatt-ttttaaggactataaatagcaa-gtatttataaaaatacatgtaatcaatacattggaaatcga 253  Q
    |||||| |||||||||||||||  ||||  ||| | |||||||||| |||| | |||| |||||||| |||||| ||||||| | ||||||| |||||||    
T  44690222 ttatgggaaatgttaacgagtgtcctcgggacactcttttaaggaccataagtggcaaagtatttatgaaaatatatgtaattattacattgaaaatcga 44690321  T
Q  254 aatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||| |||||||||||||||  |||||| ||| |||| ||||| |||||||||||||    
T  44690322 aatatttaacttttttaaaagataattacttattttagtatgtttaaagagtgccc 44690377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 37189883 - 37189945
Alignment:
Q  21 cactttcccctccatcccatttttctccccacaaccttcaacctctagtccttaaacatttct 83  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  37189883 cactttcccctccatcccatttttctccccaccaccttcaacctctagtccttaaacacttct 37189945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 24369516 - 24369401
Alignment:
Q  193 ttaaggactataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    ||||||||||||  ||| || |||||||||||| ||||| |||||| | | |||||||| ||||||||| |||||| ||||||||||||| || |||| |    
T  24369516 ttaaggactatatgtagaaaatatttataaaaaatacatataatcagtgctttggaaattgaaatgtttgacttttataaagaataattgtttattttag 24369417  T
Q  292 tatgcttaaagagtgc 307  Q
    |||| |||||||||||    
T  24369416 tatgtttaaagagtgc 24369401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 190 - 305
Target Start/End: Original strand, 50343831 - 50343946
Alignment:
Q  190 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    |||||||||||  ||| ||| ||| |||||| ||||||||| |||||||||||||| ||||  |||| ||| ||||||||||||||||||| ||| ||||    
T  50343831 tttttaaggaccgtaagtagtaagaatttatgaaaatacatataatcaatacattgaaaattaaaatatttgacttttttaaagaataattacttatttt 50343930  T
Q  290 ggtatgcttaaagagt 305  Q
       |||||||||||||    
T  50343931 aaaatgcttaaagagt 50343946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 302
Target Start/End: Original strand, 44670849 - 44670937
Alignment:
Q  214 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 302  Q
    |||||||||||||| ||||||| | | |||||||||||||||| ||||| |||||||||  ||||||  ||||||| ||||||||||||    
T  44670849 tatttataaaaatatatgtaattattgcattggaaatcgaaatatttaatttttttaaaagataattatttgttttagtatgcttaaag 44670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 53737829 - 53737908
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||| ||||| |||||||||||||||| ||| | ||||||||||||||||| ||| |||||| | |||||||||||||||    
T  53737829 tgtattcaatgcattggaaatcgaaatatttgaattttttaaagaataatttcttattttggaacgcttaaagagtgccc 53737908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 334
Target Start/End: Original strand, 41370136 - 41370303
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    |||||||||| ||| |||||||  || |||||||||||| | ||||| |||| ||||| |||||   |||||||||| ||||| |||| ||||| |||||    
T  41370136 aaatgttaacaagttctctcgaggcactttttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaa 41370235  T
Q  263 cttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaacaaga 334  Q
    ||||||| |  ||||||| |||  |||||  ||||||| ||||    || ||||| ||||||||||||||||    
T  41370236 cttttttgagaaataatttcttaatttggattgcttaatgagt----gctccggaaacactcgttaacaaga 41370303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 305
Target Start/End: Original strand, 50086376 - 50086518
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    |||||||||||||||||| ||   || | |||||| ||||||| | | ||| |||||| ||||||  |||| ||||| ||||| ||||| |||| ||| |    
T  50086376 aaatgttaacgagtgctcccggggcactctttaagaactataagtggtaagcatttatgaaaatatgtgtattcaatgcattgaaaatcaaaatatttga 50086475  T
Q  263 cttttttaaagaataattgcttgttttggtatgcttaaagagt 305  Q
     |||||||||||||||||| || |||||| ||| |||||||||    
T  50086476 tttttttaaagaataattgtttattttggaatgtttaaagagt 50086518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 23016238 - 23016336
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||| ||||||||| |  ||||| ||||| |||||||||| ||||||||| |||| |||||| ||||||| |||  ||||| ||||| |||||||||||    
T  23016238 aagtttttataaaagtctatgtattcaatgcattggaaattgaaatgtttgacttctttaaataataatttcttaatttggaatgctcaaagagtgccc 23016336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 41468166 - 41468080
Alignment:
Q  219 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 305  Q
    ||||||||||||||||||||| |||  ||||||| ||| ||||||||||||| |  |||||| ||| |||||| || ||||||||||    
T  41468166 ataaaaatacatgtaatcaatgcatcagaaatcggaatatttaacttttttataacataatttcttcttttggaattcttaaagagt 41468080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 10095637 - 10095746
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    ||||||||  |||| ||| || ||||||||||||| |||||||||| | ||||| |||||||||| ||| | |||||||||  ||||||| || |||| |    
T  10095637 tttaaggatcataagtagaaaatatttataaaaatgcatgtaatcattgcattgaaaatcgaaatatttgatttttttaaaagataattgtttattttag 10095736  T
Q  292 tatgcttaaa 301  Q
    |||| |||||    
T  10095737 tatgtttaaa 10095746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 306
Target Start/End: Complemental strand, 47560763 - 47560621
Alignment:
Q  163 aaatgttaacgagtgctctc-gatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttta 261  Q
    |||||||||||||||| ||| || ||| | ||||||||| |||||||| ||||||| || ||||| | ||||||||||  |||  ||||| |||  |||     
T  47560763 aaatgttaacgagtgc-ctctgagacactctttaaggaccataaatagtaagtattaatgaaaatgcgtgtaatcaatgtattaaaaatcaaaacatttg 47560665  T
Q  262 acttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    | ||||||||| ||||||||||| |||||| ||| ||||||||||    
T  47560664 atttttttaaa-aataattgcttattttggaatgattaaagagtg 47560621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 50775048 - 50774956
Alignment:
Q  214 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    ||||||| ||||||  |||||||||||  ||| ||||| |||| ||||||||||||||||||||||| ||| |||| | || |||||| ||||    
T  50775048 tatttatgaaaatatgtgtaatcaatatgttgaaaatcaaaatatttaacttttttaaagaataattacttattttagaatacttaaaaagtg 50774956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 305
Target Start/End: Original strand, 28005238 - 28005353
Alignment:
Q  190 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    |||||||| | ||||| ||| |||||||||| ||||||||| | || |  | ||| |||||| |||| ||| |||||||||||  |||||||||| ||||    
T  28005238 tttttaagaattataagtagtaagtatttatgaaaatacatattattataaaattagaaatcaaaatatttgacttttttaaaagataattgcttatttt 28005337  T
Q  290 ggtatgcttaaagagt 305  Q
     ||||| |||||||||    
T  28005338 agtatgtttaaagagt 28005353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 37187555 - 37187489
Alignment:
Q  337 atttctttattgtgtgtgatgaagttgtactaggttacgatgatattagtatctttgttgttttgta 403  Q
    ||||||| ||||||||||||||| || ||| |||||| ||||||  ||||||||||||||| |||||    
T  37187555 atttcttgattgtgtgtgatgaaattctacgaggttatgatgattgtagtatctttgttgtattgta 37187489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 280
Target Start/End: Original strand, 24324196 - 24324313
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    ||||||||| |||| || || ||| |||  |||| ||||||||| || ||||||||||||||||  |||||||| || ||||| ||||  |||| ||| |    
T  24324196 aaatgttaatgagtactttcaatatattcgttaaagactataaagagtaagtatttataaaaatgtatgtaatctatgcattgaaaattaaaatatttta 24324295  T
Q  263 cttttttaaagaataatt 280  Q
     ||||||| |||||||||    
T  24324296 tttttttagagaataatt 24324313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 306
Target Start/End: Original strand, 54700851 - 54700953
Alignment:
Q  202 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 301  Q
    |||| ||| |||||||| ||||||| |||||||||| | | ||||||||| |||| ||| |||||||  |||||||||| ||| ||||   |||||||||    
T  54700851 ataagtagtaagtatttttaaaaatgcatgtaatcattgccttggaaatcaaaatatttgacttttt--aagaataattacttattttaaaatgcttaaa 54700948  T
Q  302 gagtg 306  Q
    |||||    
T  54700949 gagtg 54700953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 53919936 - 53919860
Alignment:
Q  233 aatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||| ||| |||||| ||||| ||| ||||||||| |||||||||  || |||||  |||||||||||||||||    
T  53919936 aatcaatgcatcggaaattgaaatttttgacttttttatagaataatttattcttttgaaatgcttaaagagtgccc 53919860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 16822280 - 16822358
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    |||||||||| ||||| ||||||| |||||  |||||||| ||||| ||| | ||||| ||| ||||||||||| ||||    
T  16822280 aagtatttatgaaaatgcatgtaaacaatatcttggaaattgaaatatttgattttttaaaaaaataattgcttatttt 16822358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 33982504 - 33982446
Alignment:
Q  222 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 280  Q
    |||||| |||||||||||  || |||||||||||| ||||||||||||| | |||||||    
T  33982504 aaaatatatgtaatcaatgtatcggaaatcgaaatatttaacttttttataaaataatt 33982446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 37181865 - 37181923
Alignment:
Q  337 atttctttattgtgtgtgatgaagttgtactaggttacgatgatattagtatctttgtt 395  Q
    ||||||| ||||||||||||||| |||||| |||||| ||||||  | |||||||||||    
T  37181865 atttcttgattgtgtgtgatgaaattgtacgaggttatgatgattgttgtatctttgtt 37181923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 49144845 - 49144775
Alignment:
Q  219 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    ||||||||| ||||||||||| ||| | ||||| |||| ||||||||||||| | ||||||| ||| ||||    
T  49144845 ataaaaatatatgtaatcaatgcatcgaaaatcaaaatttttaacttttttataaaataatttcttctttt 49144775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 2063539 - 2063498
Alignment:
Q  237 aatacattggaaatcgaaatgtttaacttttttaaagaataa 278  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  2063539 aatacattggaaattgaactgtttgacttttttaaagaataa 2063498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 306
Target Start/End: Complemental strand, 53261666 - 53261553
Alignment:
Q  193 ttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggt 292  Q
    ||||||||| ||||||| || | ||||||||| |   |||||||| | |||||||||| ||||  ||| |  |||||||||||||||| |||  ||| |     
T  53261666 ttaaggactttaaatagtaactttttataaaagtttgtgtaatcactgcattggaaattgaaaacttttaaatttttaaagaataattacttaatttagc 53261567  T
Q  293 atgcttaaagagtg 306  Q
    ||||||||||||||    
T  53261566 atgcttaaagagtg 53261553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 31871089 - 31871169
Alignment:
Q  229 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||||| ||| |||||| ||||| ||| ||||||||| | ||||||| ||| |||||  ||||||| | |||||||    
T  31871089 atgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttcttcttttgaaatgcttagaaagtgccc 31871169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 41956465 - 41956541
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||||| | ||| |||| ||||| ||||| ||| |||||||||| || ||| ||||||  |||||||||||||    
T  41956465 tgtaatcaatgcgttgaaaattgaaatatttaaatttcttaaagaatactttcttattttggattgcttaaagagtg 41956541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 42956987 - 42957083
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttt-aaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    ||||||||||||||||   |||||| ||| |||||||||| ||||| ||| | |||||| ||| ||||| ||||| |||| | ||| ||||||||||    
T  42956987 aagtatttataaaaatgtgtgtaattaatgcattggaaattgaaatatttgatttttttaaaataataactgcttattttagaatgtttaaagagtg 42957083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 49446628 - 49446708
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaac-ttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||||||||| ||| |||||||||||| ||| || ||||||| | ||||| | ||| |||||| || ||||||||||||||    
T  49446628 tgtaatcaatgcatcggaaatcgaaatatttgactttttttataaaataacttcttcttttggaatccttaaagagtgccc 49446708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 50115118 - 50115058
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 290  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| | ||||||| ||| |||||    
T  50115118 tgtaatcaatgcataggaaatcgaaatctttgacttttttataaaataatttcttcttttg 50115058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 9e-53; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 36321622 - 36321739
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  36321622 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattggaaatcgaaatgtttaacttttctaaagaataattacttgttttgg 36321721  T
Q  292 tatgcttaaagagtgccc 309  Q
    ||||||||||||||||||    
T  36321722 tatgcttaaagagtgccc 36321739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 192 - 310
Target Start/End: Original strand, 4521005 - 4521123
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |    
T  4521005 tttaaggactatatgtagaaagtatttataaaaatacatgtaatcaatgcattggaaattgaaatgtttaacttttttaaagaataatcgcttgttttag 4521104  T
Q  292 tatgcttaaagagtgcccg 310  Q
    |||||||||||||||||||    
T  4521105 tatgcttaaagagtgcccg 4521123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 202 - 332
Target Start/End: Complemental strand, 4772121 - 4771995
Alignment:
Q  202 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 301  Q
    |||| ||||||||||||||||||||   |||||| ||||||||| |||||||||| ||  ||||||| ||| |||||||||||  |||||||||||||||    
T  4772121 ataagtagcaagtatttataaaaatgtgtgtaattaatacattgaaaatcgaaatattctactttttaaaaaaataattgcttcatttggtatgcttaaa 4772022  T
Q  302 gagtgcccgccccggagacactcgttaacaa 332  Q
    ||||    ||||||||| |||||||||||||    
T  4772021 gagt----gccccggaggcactcgttaacaa 4771995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 46370924 - 46370828
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttt-aaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    ||||||||| |||||||  |||||||||  ||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||    
T  46370924 aagtatttaaaaaaatatgtgtaatcaacgcattgaaaatcgaaatgtttaaatttttttaaagaataattgcttgttttgatatgcttaaagagtg 46370828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 192 - 307
Target Start/End: Original strand, 33744132 - 33744247
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    ||||| |||||||| ||| |||||||||| |||| | ||||||||||| ||||| |||||||||| ||| ||||||| ||| ||||||| ||| ||||      
T  33744132 tttaacgactataagtagaaagtatttatgaaaaaatatgtaatcaatgcattgaaaatcgaaatatttgactttttaaaaaaataattacttattttaa 33744231  T
Q  292 tatgcttaaagagtgc 307  Q
     |||||||||||||||    
T  33744232 aatgcttaaagagtgc 33744247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 36622023 - 36621928
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||| ||||||| |||||||||| |   ||||||||| |||| ||||||||||||||||||||||||||| |||||  ||| ||||||||||    
T  36622023 aagtatttttaaaaatgcatgtaatcattgttttggaaatcaaaatatttaacttttttaaagaataattgcttattttgaaatgtttaaagagtg 36621928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 4039626 - 4039716
Alignment:
Q  219 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||| ||||||||||| |||||||||||||||| ||| ||||||||| | |||||||  || |||||| || ||||||||||||||    
T  4039626 ataaaaatatatgtaatcaatgcattggaaatcgaaatatttgacttttttataaaataatttattcttttggaatccttaaagagtgccc 4039716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 207 - 306
Target Start/End: Complemental strand, 48812027 - 48811928
Alignment:
Q  207 tagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||||||||||||||| | |||||||||| ||||||| || ||||| ||| ||||||| ||||||||||| ||| ||||   | ||||||||||||    
T  48812027 tagcaagtatttataaaaatgcgtgtaatcaatgcattggagattgaaatattttactttttaaaagaataattacttattttaacaggcttaaagagtg 48811928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 268
Target Start/End: Complemental strand, 15549745 - 15549640
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    ||||||||||||||||  |||   || | ||||| |||||||| ||||||||||||||||||||   |||||||||| ||||| |||||||||| ||| |    
T  15549745 aaatgttaacgagtgccatcggaccactctttaaagactataagtagcaagtatttataaaaatgtgtgtaatcaatgcattgaaaatcgaaatatttta 15549646  T
Q  263 cttttt 268  Q
    ||||||    
T  15549645 cttttt 15549640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 40570774 - 40570681
Alignment:
Q  217 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat-gcttaaagagtgccc 309  Q
    |||| ||||| ||||||||||||   | |||||||||||||||| ||||||||||||||||||||||  |||| | || |||||||||||||||    
T  40570774 ttatgaaaatgcatgtaatcaatgtctaggaaatcgaaatgtttgacttttttaaagaataattgctaatttttggatagcttaaagagtgccc 40570681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 301
Target Start/End: Original strand, 7481409 - 7481481
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaac-ttttttaaagaataattgcttgttttggtatgcttaaa 301  Q
    |||||||||||||||| |||||||| | |||||| ||||||||||||||||||||| |||| | |||||||||    
T  7481409 tgtaatcaatacattgaaaatcgaagtatttaactttttttaaagaataattgcttattttagcatgcttaaa 7481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 163 - 307
Target Start/End: Complemental strand, 17554996 - 17554852
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    ||||||||||||||||||||     ||| ||||||||| |||| ||  || ||||||| |||| | || |||||||| ||||| |||| ||||  |||||    
T  17554996 aaatgttaacgagtgctctccgcgtattctttaaggaccataagtaataactatttatgaaaaaatatataatcaatgcattgtaaattgaaacatttaa 17554897  T
Q  263 cttttttaaagaataattgcttgttttggtatgcttaaagagtgc 307  Q
    |||||||||| |||||||| || |||||  ||| |||||||||||    
T  17554896 cttttttaaaaaataattgtttattttgaaatgtttaaagagtgc 17554852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 308
Target Start/End: Complemental strand, 17112793 - 17112696
Alignment:
Q  214 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaag---aataattgcttgttttggtatgcttaaagagtgcc 308  Q
    ||||||| |||||| ||||||||||| ||||||||||| |||| ||| |||||||| |||   ||||||| ||| |||||  ||||||||||||||||    
T  17112793 tatttatgaaaatatatgtaatcaatgcattggaaatcaaaatatttgacttttttgaagaataataattacttattttgccatgcttaaagagtgcc 17112696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 37976941 - 37976823
Alignment:
Q  187 cattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgt 286  Q
    ||||||||||||||||||||| |  | |||||||||||||||  ||| |||| |||||| ||||| |||| ||| || ||||||||| ||||||  || |    
T  37976941 cattttttaaggactataaatggttaatatttataaaaatacgcgtattcaaaacattgaaaatcaaaatatttgac-tttttaaagtataattttttat 37976843  T
Q  287 tttggtatgcttaaagagtg 306  Q
    ||| | ||||||||||||||    
T  37976842 tttagaatgcttaaagagtg 37976823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 26322612 - 26322710
Alignment:
Q  192 tttaaggactataaatagcaagtat-ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    ||||||||  |||| ||| |||||| |||| ||||| ||||||||||||   |||||||||||||||||| | |||||| |||||||||||||| ||||    
T  26322612 tttaaggatcataattagtaagtatattatgaaaatgcatgtaatcaatgtcttggaaatcgaaatgtttgattttttttaagaataattgcttatttt 26322710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 232 - 335
Target Start/End: Complemental strand, 39973961 - 39973862
Alignment:
Q  232 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaaca 331  Q
    |||||||| ||||| |||| ||||  |||||| |||| ||||||||||| |||  ||| | |||||||||||||    ||||||||||||||||||||||    
T  39973961 taatcaatgcattgaaaattgaaaactttaacattttaaaagaataattacttaatttagcatgcttaaagagt----gccccggagacactcgttaaca 39973866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 2633100 - 2633027
Alignment:
Q  232 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 305  Q
    ||||||||| ||||||||||||||  ||||||||||||||| ||| ||||||| |||| | ||| |||||||||    
T  2633100 taatcaatatattggaaatcgaaacatttaacttttttaaaaaattattgcttattttagaatgtttaaagagt 2633027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 306
Target Start/End: Original strand, 8836490 - 8836602
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    |||||| ||||||| | | |||||||||||||||| || ||| | ||| || |  |||||||||| ||| |||||||||||||||||||| || ||| |     
T  8836490 tttaagaactataagtggtaagtatttataaaaatgcaagtatttaatgcact--aaatcgaaatatttgacttttttaaagaataattgtttatttcga 8836587  T
Q  292 tatgcttaaagagtg 306  Q
     ||||||||||||||    
T  8836588 aatgcttaaagagtg 8836602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 34445738 - 34445663
Alignment:
Q  232 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 307  Q
    |||||||| |||||||||||||||| ||| ||||||||| | | ||||| ||| |||||| || ||||||||||||    
T  34445738 taatcaatgcattggaaatcgaaatatttgacttttttataaattaatttcttcttttggaatccttaaagagtgc 34445663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 309
Target Start/End: Complemental strand, 45584610 - 45584531
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||||||||  |||||  |||| ||||||||||||| | ||||||| ||| |||||| || ||||||||||||||    
T  45584610 tgtaatcaatacatcagaaattaaaatatttaacttttttataaaataatttcttcttttggaatccttaaagagtgccc 45584531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 50670365 - 50670482
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttt-a 261  Q
    |||||||||||||||||| ||| ||| | || ||||| ||||||||| |||||||||| ||||| ||||||||  || ||||||||| | |||| ||| |    
T  50670365 aaatgttaacgagtgctc-cga-acactcttcaaggattataaatagtaagtatttatgaaaatgcatgtaatagatgcattggaaaacaaaatatttga 50670462  T
Q  262 acttttttaaagaataattg 281  Q
      ||||||||||||||||||    
T  50670463 ttttttttaaagaataattg 50670482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 9221239 - 9221309
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattg 281  Q
    |||||||||| ||||||  |||| | | | |||||||||||||||| |||||||||| |||||||||||||    
T  9221239 aagtatttatgaaaatatgtgtattaattgcattggaaatcgaaatatttaacttttctaaagaataattg 9221309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 40203113 - 40203191
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 308  Q
    |||||||||| |||||||||| ||||| ||| |||||||||   ||||||| |||||||||  || |||||||||||||    
T  40203113 tgtaatcaatgcattggaaattgaaatatttgacttttttatgaaataatttcttgttttgtaatccttaaagagtgcc 40203191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 3047936 - 3047859
Alignment:
Q  232 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||||||| |||||||||||||||  ||| || ||||||||||| |||| |||  ||| | |||||||||||||||||    
T  3047936 taatcaatgcattggaaatcgaaaaatttgacatttttaaagaacaattacttaatttagcatgcttaaagagtgccc 3047859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 307
Target Start/End: Complemental strand, 37705980 - 37705871
Alignment:
Q  198 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 297  Q
    |||||||| |||||||||||||| |||| || |||||| ||| ||||| ||||| |||  ||| | |||| |||| ||||||| ||  |||| | |||||    
T  37705980 gactataagtagcaagtatttatgaaaaaacgtgtaattaatgcattgaaaatcaaaacatttgagttttctaaaaaataattactcattttcgaatgct 37705881  T
Q  298 taaagagtgc 307  Q
    ||||||||||    
T  37705880 taaagagtgc 37705871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 34861259 - 34861326
Alignment:
Q  242 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||| ||||||||| || |||||||| ||||||| |||  ||| | |||||||||||||||||    
T  34861259 attggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaaagagtgccc 34861326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 28672303 - 28672393
Alignment:
Q  211 aagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaa 300  Q
    ||||||||||||||| ||  |||||||||| ||||  ||||| |||| ||| ||||||||||| |||||||| || |||| | ||||||||    
T  28672303 aagtatttataaaaaatatgtgtaatcaatgcatttaaaatcaaaatatttgacttttttaaaaaataattgtttattttagaatgcttaa 28672393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 64863 - 64936
Alignment:
Q  232 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 305  Q
    |||||||| || || || ||||||| |||||| ||||||||||||||||| || |||| | ||| |||||||||    
T  64863 taatcaatgcaatgaaattcgaaatatttaacgtttttaaagaataattgtttattttagaatgtttaaagagt 64936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 3755944 - 3756041
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 308  Q
    ||||||||||||||||  ||||||||||   |||| ||||  ||||| || ||| ||||||||||||||| ||| |||| | ||| ||||||| ||||    
T  3755944 aagtatttataaaaatgtatgtaatcaacgaattgcaaattaaaatgattgactcttttaaagaataatttcttattttagaatgtttaaagaatgcc 3756041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 35438069 - 35438102
Alignment:
Q  235 tcaatacattggaaatcgaaatgtttaacttttt 268  Q
    ||||| ||||||||||||||||||||||||||||    
T  35438069 tcaatgcattggaaatcgaaatgtttaacttttt 35438102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 46830129 - 46830242
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    ||||| |||||||| ||| |||||||||| |||| || |||||||||| |  || ||||  |||  |||||||||||| || |||||||| || ||||      
T  46830129 tttaaagactataagtagtaagtatttatgaaaaaacgtgtaatcaatgcggtgaaaattaaaacatttaactttttttaaaaataattgtttattttat 46830228  T
Q  292 tatgcttaaagagt 305  Q
     |||||||||||||    
T  46830229 aatgcttaaagagt 46830242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 1048739 - 1048783
Alignment:
Q  265 tttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||    
T  1048739 tttttaaagaataattttttaatttggtatgcttaaagagtgccc 1048783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 25302143 - 25302067
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    ||||||||||  |||| |||||||||| ||| ||||||||| | ||| |||  ||||||||| || |||||||||||    
T  25302143 tgtaatcaatgtattgaaaatcgaaatctttgacttttttatacaattattttttgttttggaatccttaaagagtg 25302067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 309
Target Start/End: Complemental strand, 48947312 - 48947196
Alignment:
Q  193 ttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggt 292  Q
    ||||||||| ||||| | || | ||||| |||||   |||||||| | |||||||||| ||||  ||| || |||||||| ||||||| |||  ||| ||    
T  48947312 ttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaactttgacatttttaaaaaataattacttaatttagt 48947213  T
Q  293 atgcttaaagagtgccc 309  Q
    ||||||||||| |||||    
T  48947212 atgcttaaagaatgccc 48947196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 190 - 334
Target Start/End: Original strand, 7513290 - 7513430
Alignment:
Q  190 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||||||||    
T  7513290 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttaatttttctaaagaataattgcttgtttt 7513389  T
Q  290 ggtatgcttaaagagtgcccgccccggagacactcgttaacaaga 334  Q
    | ||||||||||||||||||    |||  ||||||||||||||||    
T  7513390 gatatgcttaaagagtgccc----cgggaacactcgttaacaaga 7513430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 201 - 334
Target Start/End: Original strand, 36348494 - 36348624
Alignment:
Q  201 tataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgctta 299  Q
    ||||| || |||||||||||| ||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| || ||||||    
T  36348494 tataagtaacaagtatttatataaagtacatgtaatcaatgcattgaaaatcaaaatgtttaacttttttaaagaataattgcttattttagtgtgctta 36348593  T
Q  300 aagagtgcccgccccggagacactcgttaacaaga 334  Q
    || |||    |||||||||||| ||||||||||||    
T  36348594 aaaagt----gccccggagacattcgttaacaaga 36348624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 11078027 - 11077913
Alignment:
Q  193 ttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggt 292  Q
    ||||||||||||| |||||| ||||| |||||||| || |||| |||  || ||||||||||| |||| | |||||||||||||||||||||||||||||    
T  11078027 ttaaggactataagtagcaactatttttaaaaatatatataattaatgtataggaaatcgaaaagtttgaattttttaaagaataattgcttgttttggt 11077928  T
Q  293 atgcttaaagagtgc 307  Q
    |||| ||||||||||    
T  11077927 atgcataaagagtgc 11077913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 192 - 334
Target Start/End: Complemental strand, 39093194 - 39093055
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgt-tttg 290  Q
    |||||||  ||||| |||||  ||||||||||||| | |||||||||| |||||||| ||||||| ||  ||||||||||||||||||||||| | ||||    
T  39093194 tttaagggatataagtagcacatatttataaaaatgcgtgtaatcaatgcattggaactcgaaatattatacttttttaaagaataattgcttttgtttg 39093095  T
Q  291 gtatgcttaaagagtgcccgccccggagacactcgttaacaaga 334  Q
    |||||||||||||||     |||||| |||||||||||||||||    
T  39093094 gtatgcttaaagagt----accccggggacactcgttaacaaga 39093055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 202 - 306
Target Start/End: Complemental strand, 22209505 - 22209401
Alignment:
Q  202 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 301  Q
    |||||||| |||||||||| |||||| |||||||||||   ||||||||| |||| |||||||||||||| |||||||||||| ||||   |||||||||    
T  22209505 ataaatagtaagtatttatgaaaatatatgtaatcaatgtcttggaaatcaaaatatttaacttttttaaggaataattgcttcttttaaaatgcttaaa 22209406  T
Q  302 gagtg 306  Q
    |||||    
T  22209405 gagtg 22209401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 9460517 - 9460450
Alignment:
Q  242 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  9460517 attgaaaatcgaaatgtttgacttttctaaagaataattgcttgttttggtatgcttaacgagtgccc 9460450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 157 - 308
Target Start/End: Complemental strand, 27056054 - 27055903
Alignment:
Q  157 tatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaat 256  Q
    ||||| |||||||||||||||||| |||   | | |||||||||||||| ||| || ||||||| |||| |  ||||||||||||||||||||||||||     
T  27056054 tatgggaaatgttaacgagtgctcccgaagtactctttaaggactataagtagtaattatttatgaaaaaatgtgtaatcaatacattggaaatcgaaac 27055955  T
Q  257 gtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 308  Q
     ||||||||| ||    ||||||| ||| ||||   ||||||||||||||||    
T  27055954 atttaactttcttttgaaataatttcttattttaaaatgcttaaagagtgcc 27055903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 12782837 - 12782772
Alignment:
Q  241 cattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||||||||||| || |||||||||||||||||||||| | |||| ||||||||||||||||    
T  12782837 cattggaaatcgaaatattcaacttttttaaagaataattgcatattttagtatgcttaaagagtg 12782772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 11995248 - 11995160
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatc 251  Q
    |||||||||||||||| | ||   || | ||||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  11995248 aaatgttaacgagtgcccccggggcactctttaaggcctataaatagcaagtatttataaaaatacgagtaatcaatgcattggaaatc 11995160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 2445121 - 2445218
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||  | | | ||| |||||||||| ||||||||||  ||| ||||||||||| ||||    
T  2445121 tttaaggattataagtagtaagtatttataaaaatacatgtaacgattgccttgaaaatcgaaatatttaacttttaaaaaaaataattgcttatttt 2445218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 309
Target Start/End: Original strand, 8108241 - 8108362
Alignment:
Q  189 ttttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataa-ttgcttgtt 287  Q
    ||||||||||| ||||| ||| |||||||||| |||||   ||||||||||| ||   ||||| |||| |||||||||||||| |||||| ||| || ||    
T  8108241 ttttttaaggattataagtagaaagtatttatgaaaatgtgtgtaatcaatatatccaaaatcaaaatatttaacttttttaatgaataacttgtttatt 8108340  T
Q  288 ttggtatgcttaaagagtgccc 309  Q
    || | |||||||||||||||||    
T  8108341 ttagaatgcttaaagagtgccc 8108362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 40949468 - 40949379
Alignment:
Q  191 ttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 280  Q
    ||||||||||  ||| ||| |||||||||||||||| |||||||| |||| ||||||||||||||| ||  |||||| | ||||||||||    
T  40949468 ttttaaggaccttaagtagtaagtatttataaaaatgcatgtaattaatatattggaaatcgaaatattagacttttatgaagaataatt 40949379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 11993873 - 11993829
Alignment:
Q  262 acttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  11993873 acttttttaaagaataattgcttgtttttgtatgcttaaagagtg 11993829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 36924119 - 36924031
Alignment:
Q  217 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 305  Q
    |||| ||||| |||||||| |||   |||||||||||||| ||| ||||||||||||||||||| |||||||| |   |||||||||||    
T  36924119 ttatgaaaatgcatgtaattaatgttttggaaatcgaaatatttgacttttttaaagaataatttcttgtttttgatagcttaaagagt 36924031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 20279602 - 20279669
Alignment:
Q  242 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||| |||| ||||| ||| ||||||| ||||||||||||||| |||| | |||||||||||||||||    
T  20279602 attgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccc 20279669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 21066229 - 21066296
Alignment:
Q  242 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||| |||| ||||| ||| ||||||| ||||||||||||||| |||| | |||||||||||||||||    
T  21066229 attgaaaattgaaatatttgactttttgaaagaataattgcttattttagaatgcttaaagagtgccc 21066296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 45368775 - 45368865
Alignment:
Q  247 aaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg--cccgccccggagacactcgttaacaagat 335  Q
    |||| ||||| ||||||||||||| | ||||||| ||| |||||| || |||||||||||  |||||||||| | |||||||||| |||||    
T  45368775 aaattgaaatatttaacttttttataaaataatttctttttttggaatccttaaagagtgcccccgccccgggggcactcgttaaaaagat 45368865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 309
Target Start/End: Complemental strand, 12002365 - 12002259
Alignment:
Q  203 taaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 302  Q
    ||||||| || | |||||||||||   |||||||| | |||||||||| ||||  ||| || |||||||||||||||| |||  ||| |||| |||||||    
T  12002365 taaatagtaactttttataaaaatttgtgtaatcagtgcattggaaattgaaaacttttacatttttaaagaataattacttaatttagtatacttaaag 12002266  T
Q  303 agtgccc 309  Q
    |||||||    
T  12002265 agtgccc 12002259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 306
Target Start/End: Original strand, 24103049 - 24103162
Alignment:
Q  192 tttaaggactataaatagcaagtatttat-aaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 290  Q
    |||||||||||||| ||| |||||||| | ||||||||  ||||||| | ||| |||||||||||  ||| || |||| ||| ||||||| ||| ||||     
T  24103049 tttaaggactataagtagtaagtatttgtgaaaaatac--gtaatcattgcatcggaaatcgaaacatttgaccttttaaaaaaataatttcttatttta 24103146  T
Q  291 gtatgcttaaagagtg 306  Q
    | ||||||||||||||    
T  24103147 gaatgcttaaagagtg 24103162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 5217782 - 5217833
Alignment:
Q  219 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttttta 270  Q
    |||||||||  |||||||||||||| |||||||||||| ||| |||||||||    
T  5217782 ataaaaatatgtgtaatcaatacatcggaaatcgaaatatttgactttttta 5217833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 17521038 - 17521077
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaactttttt 269  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  17521038 tgtaatcaatacattggaaaacgaaatatttaactttttt 17521077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 31265061 - 31264990
Alignment:
Q  237 aatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 308  Q
    |||||||||||||| ||| ||||| ||||||||||||||||| | | |  ||| | ||||||||||||||||    
T  31265061 aatacattggaaattgaattgtttgacttttttaaagaataacttcctaatttagcatgcttaaagagtgcc 31264990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 39333550 - 39333593
Alignment:
Q  246 gaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||    
T  39333550 gaaatcgaaatgtttgacttttttgaagaataattgcttatttt 39333593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 37167125 - 37167016
Alignment:
Q  196 aggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatg 295  Q
    ||||| |||||| | || |||| || ||||| | |||| ||||| |||||||||||||| | ||||| |||||| ||||||||||| || |||||  |||    
T  37167125 aggaccataaatggtaactattcatgaaaatgcgtgtattcaatgcattggaaatcgaactatttaa-ttttttgaagaataattgtttattttgaaatg 37167027  T
Q  296 cttaaagagtg 306  Q
     ||||||||||    
T  37167026 tttaaagagtg 37167016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 303
Target Start/End: Original strand, 5293711 - 5293852
Alignment:
Q  163 aaatgttaacgagtgctctc-gatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttta 261  Q
    |||||||||||||||||  | || ||| | ||||||||| ||||  |  |||||||||| ||||| |||||||| | | ||||  ||||| |||| ||||    
T  5293711 aaatgttaacgagtgcttcctgagacactctttaaggaccataagcaagaagtatttatgaaaatgcatgtaattattgcattaaaaatcaaaatattta 5293810  T
Q  262 acttttttaaagaataattgcttgttttggtatgcttaaaga 303  Q
    |||||| ||||||| |||| ||| ||||   |||||||||||    
T  5293811 acttttataaagaacaattacttattttaaaatgcttaaaga 5293852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 37564374 - 37564443
Alignment:
Q  237 aatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||||||||| ||| | ||| ||||||||||||||||||| |||  ||| | ||| ||||||||||    
T  37564374 aatacattggaaattgaactatttgacttttttaaagaataatttcttaatttagcatgtttaaagagtg 37564443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 42760181 - 42760258
Alignment:
Q  229 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    ||||||||||| |||||||||| ||||  ||| | |||||||  |||||||| ||  |||||| ||||||||||||||    
T  42760181 atgtaatcaatgcattggaaattgaaacatttgatttttttatggaataatttctccttttggaatgcttaaagagtg 42760258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 7528262 - 7528338
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    ||||||||||  ||||||||||||||| ||| |||||  |||||||||||| ||| ||||   ||||||||| ||||    
T  7528262 tgtaatcaatgtattggaaatcgaaatatttgactttcgtaaagaataattacttattttaaaatgcttaaaaagtg 7528338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 192 - 334
Target Start/End: Complemental strand, 30509425 - 30509287
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||| ||||||    
T  30509425 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatgcattgaaaatcgaaatgtttgatttttttaaagaataattgcttattttgg 30509326  T
Q  292 tatgcttaaagagtgcccgccccggagacactcgttaacaaga 334  Q
    ||||||||||||||    |  ||||||||||||||||||||||    
T  30509325 tatgcttaaagagt----gttccggagacactcgttaacaaga 30509287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 13070645 - 13070783
Alignment:
Q  198 gactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgct 297  Q
    |||||||||||| || ||||||| |||| | |||||||||||  ||||||||||  ||  ||||||||||| ||| ||| ||||||| |||| | ||       
T  13070645 gactataaatagtaactatttatgaaaaaatatgtaatcaatgtattggaaatcacaacatttaactttttaaaaaaattattgcttattttagaatatc 13070744  T
Q  298 taaagagtg-cccgccccggagacactcgttaacaagat 335  Q
    ||||||||| |||||||| ||  ||||||||||||||||    
T  13070745 taaagagtgccccgccccagatgcactcgttaacaagat 13070783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 30250663 - 30250611
Alignment:
Q  253 aaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 305  Q
    |||||||| |||||||| ||||||||||| |||| ||||||||||||||||||    
T  30250663 aaatgtttgacttttttgaagaataattgtttgtcttggtatgcttaaagagt 30250611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 334
Target Start/End: Original strand, 13070474 - 13070646
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    ||||||||||||||||   ||| ||| | |||||| ||||||||||| || ||||||| |||| |  ||||||||||  ||||||||||  ||  |||||    
T  13070474 aaatgttaacgagtgcctccgagacactctttaag-actataaatagtaactatttatgaaaaaatgtgtaatcaatgtattggaaatcacaacatttaa 13070572  T
Q  263 cttttttaaagaataattgcttgttttggtatgcttaaagagtg--cccgccccggagacactcgttaacaaga 334  Q
    |||||| ||| ||| ||||||| |||| | ||   |||||||||  |||||||| ||  |||||||||||||||    
T  13070573 ctttttaaaaaaattattgcttattttagaatatctaaagagtgcccccgccccagatgcactcgttaacaaga 13070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 31702748 - 31702854
Alignment:
Q  203 taaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 302  Q
    ||||||| || | ||||||||||||  |||||||||| |||| |||||  ||||  |||||||||||| | ||||||| ||| |||||  || |||||||    
T  31702748 taaatagtaactttttataaaaatatgtgtaatcaatgcattagaaattaaaatacttaacttttttataaaataatttcttcttttgaaattcttaaag 31702847  T
Q  303 agtgccc 309  Q
    |||||||    
T  31702848 agtgccc 31702854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 12383042 - 12383132
Alignment:
Q  219 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||||||||  | |||||||| ||| ||||||| |||| ||||||||||||| | ||||||| ||  |||||  || ||||||||||||||    
T  12383042 ataaaaatatgtataatcaatgcatcggaaatcaaaatatttaacttttttataaaataatttctccttttgaaattcttaaagagtgccc 12383132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 46711882 - 46712008
Alignment:
Q  162 aaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttta 261  Q
    |||||||||||||||| ||||  |||| ||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||     
T  46711882 aaaatgttaacgagtg-tctccgtacactttttaaggaccataaataacaagtatttataaaaatgcatgtaatcaatgcattggaaatcaaaatgtttg 46711980  T
Q  262 acttttttaaagaataattgcttgtttt 289  Q
    ||||||||||||||||||| ||| ||||    
T  46711981 acttttttaaagaataattacttatttt 46712008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 157 - 308
Target Start/End: Complemental strand, 37708580 - 37708430
Alignment:
Q  157 tatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaat 256  Q
    ||||||||||||||||||||||||| |   |||| |||||| ||||||  ||  |  |||||||||||||||||||||||| | ||||| |||| |||||    
T  37708580 tatggaaaatgttaacgagtgctctgggg-cattctttaagaactatatgtaaaacatatttataaaaatacatgtaatcagtgcattgaaaattgaaat 37708482  T
Q  257 gtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 308  Q
    |||||||||||||||||| ||||||||| ||||  |||||||||||||||||    
T  37708481 gtttaacttttttaaagactaattgcttattttaatatgcttaaagagtgcc 37708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 52309277 - 52309184
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttg 285  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| ||| || |||||||||||||||||||||    
T  52309277 tttaagggctataagtagcaagtatttataaaaatacgtgtaatcaatgcattggaaatcgaaatattttacctttttaaagaataattgcttg 52309184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 158 - 303
Target Start/End: Original strand, 38457179 - 38457324
Alignment:
Q  158 atggaaaatgttaacgagtgct-ctcg-atacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaa 255  Q
    |||||||||||||||||||||| || | |||| | ||||||| || |||||||| |||||||||  |||||||||||||||||| ||||| ||||| |||    
T  38457179 atggaaaatgttaacgagtgcttctgggatac-tcttttaagaaccataaatagtaagtatttacgaaaatacatgtaatcaatgcattgaaaatcaaaa 38457277  T
Q  256 tgtttaacttttttaaagaataattgcttgttttggtatgcttaaaga 303  Q
    | ||||| ||||||||||||||||||||| || | | |||||||||||    
T  38457278 tatttaa-ttttttaaagaataattgcttattatagaatgcttaaaga 38457324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 39400293 - 39400388
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    ||||||||||||||||||||||||| ||| ||||| ||||  ||||||||||||| ||||||||||||||  || |||| |||| |||||||||||    
T  39400293 aagtatttataaaaatacatgtaattaatgcattgaaaattaaaatgtttaacttgtttaaagaataattaattattttagtatacttaaagagtg 39400388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 163 - 280
Target Start/End: Complemental strand, 40546464 - 40546348
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttat-aaaaatacatgtaatcaatacattggaaatcgaaatgttta 261  Q
    |||||||||||||||  || || |||||||||||| || |||| ||| |||||||||| |||||| |||||||||||| |||||||||||||||| |||     
T  40546464 aaatgttaacgagtgtcct-gagacattttttaag-accataagtagtaagtatttatgaaaaatgcatgtaatcaatgcattggaaatcgaaatatttg 40546367  T
Q  262 acttttttaaagaataatt 280  Q
    ||||||||||| |||||||    
T  40546366 acttttttaaaaaataatt 40546348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 50217002 - 50217083
Alignment:
Q  225 atacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 307  Q
    ||||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||||||||||| ||||| |||||||||||    
T  50217002 atacatgtaatcaat-cattgaaaatcgaaatgattgacttctttaaagaataattgcttgttttagtatgtttaaagagtgc 50217083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 46188549 - 46188685
Alignment:
Q  164 aatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaac 263  Q
    ||||||||||||||||  ||| |||||| |||||||| |||| ||| |||||||||| ||||| |||||| ||||| ||| | |||||| ||| ||| ||    
T  46188549 aatgttaacgagtgcttccgagacatttattaaggaccataagtagtaagtatttatgaaaatgcatgtagtcaatgcatcgaaaatcg-aatatttgac 46188647  T
Q  264 ttttttaaagaataattgcttgttttggtatgcttaaa 301  Q
    ||| ||||| ||||||| ||| |||||| |||||||||    
T  46188648 tttcttaaacaataattacttattttggaatgcttaaa 46188685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 305
Target Start/End: Original strand, 48322172 - 48322316
Alignment:
Q  160 ggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtt 259  Q
    ||||||||||||||||||||| ||   || | ||||||||| |||| ||| | |||||||| |||| |||||||||||||  ||||||||||||||  ||    
T  48322172 ggaaaatgttaacgagtgctc-cggggcactctttaaggaccataagtagtaggtatttatgaaaaaacatgtaatcaatgtattggaaatcgaaacatt 48322270  T
Q  260 taacttttttaaagaataattgcttgttttggtatgcttaaagagt 305  Q
    | ||||||| ||| ||||||| ||| |||| | |||||||||||||    
T  48322271 tgactttttaaaaaaataattacttattttagaatgcttaaagagt 48322316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 309
Target Start/End: Complemental strand, 30082997 - 30082849
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    |||||||||||||||   |||  ||| | ||||||  |||||||||| |||||||| ||||||| |||||||||| | | || | ||| ||||| ||| |    
T  30082997 aaatgttaacgagtgtcttcgggacactctttaagacctataaatagtaagtatttttaaaaatccatgtaatcatttctttaggaattgaaatatttga 30082898  T
Q  263 ctttttt--aaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||||||  ||||||||| ||||| |||| | |||||||||||||||||    
T  30082897 cttttttttaaagaataactgcttattttagaatgcttaaagagtgccc 30082849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 52309047 - 52309008
Alignment:
Q  270 aaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52309047 aaagaataattgcttgttttggtatgcttaaagagtgccc 52309008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 31901804 - 31901904
Alignment:
Q  188 attttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtt 287  Q
    ||||||||||||| |||||||  |||||||||| ||||| ||||||||||||| ||| |||||| |||| | | || |||||||| ||||||| ||| ||    
T  31901804 attttttaaggaccataaataataagtatttatgaaaatgcatgtaatcaatatattagaaatcaaaatatatgac-tttttaaacaataattacttatt 31901902  T
Q  288 tt 289  Q
    ||    
T  31901903 tt 31901904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 40392502 - 40392413
Alignment:
Q  191 ttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 280  Q
    |||||||||  |||| ||| || ||||||| |||||| ||||||||||| |||| |||||  |||| ||||||||||||||||| |||||    
T  40392502 ttttaaggaacataagtagtaaatatttatgaaaatatatgtaatcaatgcattagaaataaaaatatttaacttttttaaagagtaatt 40392413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 24658464 - 24658532
Alignment:
Q  223 aaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    |||| |||||||| ||||  || ||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  24658464 aaatgcatgtaattaatatcttagaaatcgaaatatttaacttttttaaagaataatttcttattttgg 24658532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 25461561 - 25461462
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttta-acttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||  |||||| |||||||||| | | |||||||| ||||| |||  |||||||||||||||||| |||| |||||  ||| |||||||||||||    
T  25461561 aagtattttaaaaaatgcatgtaatcattgccttggaaattgaaatattttgacttttttaaagaataatggcttattttgcaatgtttaaagagtgccc 25461462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 23642786 - 23642744
Alignment:
Q  264 ttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  23642786 tttttttaagaataattgcttattttggtatgcttaaagagtg 23642744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 1511407 - 1511326
Alignment:
Q  229 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaag-aataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||||| |||||||||| ||||| ||| || ||||| | | ||||||| ||| |||||| |||||||||||||||||    
T  1511407 atgtaatcaatgcattggaaattgaaatctttgacatttttgatggaataatttcttcttttggcatgcttaaagagtgccc 1511326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 309
Target Start/End: Original strand, 41571601 - 41571682
Alignment:
Q  229 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaa-taattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||||| |||| ||||| ||||| |||  ||||||||| ||| ||||| ||| |||||| |||||||||||||||||    
T  41571601 atgtaatcaatgcattcgaaattgaaatttttggcttttttaatgaaataatttcttcttttggaatgcttaaagagtgccc 41571682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 47115310 - 47115403
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaag-aataattgctt 284  Q
    ||||||||| |||||||  |||||||||| |||| ||||||||||||| ||||| ||||| |||  ||| | ||||| |||| |||||||||||    
T  47115310 tttaaggaccataaataataagtatttatcaaaaaacatgtaatcaatgcattgaaaatcaaaacatttgattttttaaaagaaataattgctt 47115403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 8703339 - 8703427
Alignment:
Q  220 taaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 308  Q
    ||||||| |||||||| | | | || |||||| |||| ||||||||||||||| || |||||||| |||| | |||||||| |||||||    
T  8703339 taaaaatgcatgtaatgattgccttagaaatcaaaatatttaacttttttaaataacaattgcttattttagaatgcttaacgagtgcc 8703427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 9055226 - 9055314
Alignment:
Q  220 taaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 308  Q
    ||||||| |||||||| | | | || |||||| |||| ||||||||||||||| || |||||||| |||| | |||||||| |||||||    
T  9055226 taaaaatgcatgtaatgattgccttagaaatcaaaatatttaacttttttaaataacaattgcttattttagaatgcttaacgagtgcc 9055314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 11404791 - 11404727
Alignment:
Q  216 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 280  Q
    |||||||||||||||||||| ||||||||  ||||  |||| ||||||||||||| | |||||||    
T  11404791 tttataaaaatacatgtaattaatacattaaaaattaaaatatttaacttttttataaaataatt 11404727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 18399194 - 18399274
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaactttttta-aagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| || ||| ||| ||| |||||| || ||||||||||||||    
T  18399194 tgtaatcaatgcatcggaaatcgaaatatttgacttttttataaaaattatttcttcttttggaatccttaaagagtgccc 18399274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Original strand, 50368424 - 50368500
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    ||||||||||||||||| ||  ||||||| || | |||||| |||| ||| ||||||||||||||||||| ||| ||||    
T  50368424 aagtatttataaaaatatat--aatcaatgcaatagaaatcaaaatatttgacttttttaaagaataattacttatttt 50368500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 34759007 - 34758900
Alignment:
Q  223 aaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacac 322  Q
    ||||| ||||||||||| |||  | | ||||||| ||| ||||||||| | ||||||| ||| |||| | || ||||||||||    ||||||||| |||    
T  34759007 aaatatatgtaatcaatgcatcaggagtcgaaatatttcacttttttataaaataattacttctttttgaatccttaaagagt----gccccggaggcac 34758912  T
Q  323 tcgttaacaaga 334  Q
    ||||||||||||    
T  34758911 tcgttaacaaga 34758900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 43804033 - 43803992
Alignment:
Q  237 aatacattggaaatcgaaatgtttaacttttttaaagaataa 278  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  43804033 aatacattggaaattgaattgtttgacttttttaaagaataa 43803992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 54290819 - 54290860
Alignment:
Q  237 aatacattggaaatcgaaatgtttaacttttttaaagaataa 278  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  54290819 aatacattggaaattgaactgtttgacttttttaaagaataa 54290860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 5504809 - 5504884
Alignment:
Q  211 aagtatttataaaaatacatgtaatca--atacattggaaatcgaaatgtttaacttttttaaagaataattgctt 284  Q
    |||||||||| ||||| ||||||||||  |||| ||  |||| ||||| ||| ||||||||||||||||| |||||    
T  5504809 aagtatttatgaaaatgcatgtaatcataataccttaaaaattgaaatatttgacttttttaaagaataactgctt 5504884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 31681233 - 31681165
Alignment:
Q  188 attttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaat 256  Q
    ||||||||||||| | |||||  |||||||||| ||||| ||||||||||||  ||| |||||| ||||    
T  31681233 attttttaaggacaaaaaataataagtatttatgaaaatgcatgtaatcaatgtattagaaatcaaaat 31681165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 31917461 - 31917529
Alignment:
Q  188 attttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaat 256  Q
    ||||||||||||| | |||||  |||||||||| ||||| ||||||||||||  ||| |||||| ||||    
T  31917461 attttttaaggacaaaaaataataagtatttatgaaaatgcatgtaatcaatgtattagaaatcaaaat 31917529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 55110112 - 55110048
Alignment:
Q  216 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 280  Q
    ||||| |||||| ||||||||||| ||||| |||||||||| ||| | ||||||| | |||||||    
T  55110112 tttatgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataatt 55110048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 192 - 308
Target Start/End: Complemental strand, 13811148 - 13811033
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    ||||||| |||||||||| |||||||||||||||||| ||| |||||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||    
T  13811148 tttaagggctataaatagaaagtatttataaaaatacgtgtgatcaatgcattggaaattaaaatattttacttttttaaagaataattgcttgttttgg 13811049  T
Q  292 tatgcttaaagagtgcc 308  Q
    | |||||||||||||||    
T  13811048 t-tgcttaaagagtgcc 13811033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 18223208 - 18223087
Alignment:
Q  207 tagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||||||||||||||| | | |||||||| |||||||||| ||||| ||  | |||||||||||||||||||||||||||||||||||||| |||     
T  18223208 tagcaagtatttataaaaatgcgtataatcaatgcattggaaattgaaatattctatttttttaaagaataattgcttgttttggtatgcttaaaaagt- 18223110  T
Q  307 cccgccccggagacactcgttaacaa 332  Q
       | |||| ||||||||||||||||    
T  18223109 ---gtcccgaagacactcgttaacaa 18223087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 2825961 - 2826066
Alignment:
Q  200 ctataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgctta 299  Q
    |||||| ||| ||||||||||||||||   |||||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||| |||| |||||||||    
T  2825961 ctataagtagtaagtatttataaaaatgtgtgtaatcaatgcattggaaatcgaaatattttacttttttaaaaaataatttcttattttagtatgctta 2826060  T
Q  300 aagagt 305  Q
    ||||||    
T  2826061 aagagt 2826066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 192 - 305
Target Start/End: Complemental strand, 27133185 - 27133072
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    ||||| |||||||| ||| |||| ||| ||||||| ||| |||||||| |||||||||||||| ||| | ||||||||||||||||||||||| |||| |    
T  27133185 tttaaagactataagtagtaagtgtttttaaaaatgcatataatcaatgcattggaaatcgaattgtatgacttttttaaagaataattgcttattttag 27133086  T
Q  292 tatgcttaaagagt 305  Q
    |||| |||||||||    
T  27133085 tatgtttaaagagt 27133072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 16717718 - 16717604
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    ||||||||  |||| ||| |||||||||| ||||| ||| |||||||| | ||||||||| |||| ||||| ||||||||||||||||| ||| |||| |    
T  16717718 tttaaggaacataagtagtaagtatttatgaaaatgcatataatcaatgctttggaaatcaaaatatttaatttttttaaagaataattacttattttag 16717619  T
Q  292 tatgcttaaagagtg 306  Q
     ||||||||||||||    
T  16717618 aatgcttaaagagtg 16717604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 192 - 308
Target Start/End: Original strand, 26408338 - 26408456
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaag--aataattgcttgtttt 289  Q
    |||||||| ||| || ||||||||||||||||||||  ||||||||||  ||| ||||| ||||| ||| ||||||||      ||||||||||||||||    
T  26408338 tttaaggaatattaaaagcaagtatttataaaaatatgtgtaatcaatgtattagaaattgaaatattttactttttttttttaaataattgcttgtttt 26408437  T
Q  290 ggtatgcttaaagagtgcc 308  Q
    |||||||||||||||||||    
T  26408438 ggtatgcttaaagagtgcc 26408456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 309
Target Start/End: Complemental strand, 3882754 - 3882608
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    |||||||||||||||| | ||  ||| | |||||| || |||| ||| ||||| | || |||||   |||||||||| ||||| ||| |||||| ||| |    
T  3882754 aaatgttaacgagtgcccccgggacactctttaagaaccataagtagtaagtactcatgaaaatgtgtgtaatcaatgcattgaaaaccgaaatatttga 3882655  T
Q  263 cttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    | |||||||||||||||||||| |||| | |||||||||||||||||    
T  3882654 cctttttaaagaataattgcttattttagaatgcttaaagagtgccc 3882608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 2889054 - 2888929
Alignment:
Q  155 tttatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaa 254  Q
    ||||||| ||||| |||| |||||  |||  ||| | |||||||||||||| ||| | |||||||| ||||    |||| ||||||||||||||||||||    
T  2889054 tttatgggaaatggtaacaagtgccatcgggacactctttaaggactataagtagtatgtatttatgaaaaagtgtgtagtcaatacattggaaatcgaa 2888955  T
Q  255 atgtttaacttttttaaagaataatt 280  Q
    || ||||||||||||||| |||||||    
T  2888954 atatttaacttttttaaaaaataatt 2888929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 307
Target Start/End: Original strand, 42924413 - 42924529
Alignment:
Q  191 ttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 290  Q
    |||||||| | |||||||| || ||||||| ||||| |||||||||||||| ||| |||| ||||| ||| | |||||| || ||||||| ||| ||||     
T  42924413 ttttaaggtccataaatagtaaatatttatgaaaatgcatgtaatcaatacgttgaaaattgaaatatttgattttttttaaaaataattacttctttta 42924512  T
Q  291 gtatgcttaaagagtgc 307  Q
    | |||||||||||||||    
T  42924513 gaatgcttaaagagtgc 42924529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 186 - 301
Target Start/End: Complemental strand, 35312218 - 35312103
Alignment:
Q  186 acattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttg 285  Q
    |||||| |||||||| |||||||| || |||||||||||||  ||||||| ||||||||| ||||  |||| ||||| |||||||||||| | ||| ||     
T  35312218 acatttcttaaggaccataaatagtaaatatttataaaaatgtatgtaatgaatacattgtaaattaaaatatttaatttttttaaagaaaatttgttta 35312119  T
Q  286 ttttggtatgcttaaa 301  Q
    |||| | |||||||||    
T  35312118 ttttagaatgcttaaa 35312103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 8964482 - 8964386
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 307  Q
    |||||||||| |||||   |||||||||| |||||||||| ||||| ||| ||||||||||||||||||| |||  ||| | ||||||||| |||||    
T  8964482 aagtatttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaaacagtgc 8964386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 192 - 291
Target Start/End: Complemental strand, 10824747 - 10824647
Alignment:
Q  192 tttaaggactataaatagcaagtat-ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 290  Q
    ||||| ||| |||| ||| |||||| |||| |||||||||||||||||||  ||||||||  |||||||| ||||||| ||||||||| ||||| |||||    
T  10824747 tttaaagaccataattagtaagtatattatgaaaatacatgtaatcaatatcttggaaattaaaatgtttgactttttaaaagaataactgcttattttg 10824648  T
Q  291 g 291  Q
    |    
T  10824647 g 10824647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 6761760 - 6761839
Alignment:
Q  229 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 308  Q
    ||||||||||| |||||||||| ||||| ||| ||||||||| ||||| |||  || |||||| ||||||||||||||||    
T  6761760 atgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgatttattcttttggaatgcttaaagagtgcc 6761839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 45076186 - 45076241
Alignment:
Q  253 aaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcc 308  Q
    |||| ||||||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  45076186 aaatatttaacttttttaaagaataattgcttattttagtatgtttaaagagtgcc 45076241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 6797306 - 6797192
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    ||||||||  ||||||| ||| ||||||| |||||||||||||| | | ||||| ||| | |||| ||| |||||||||||  ||||||| || |||| |    
T  6797306 tttaaggatcataaataacaaatatttatgaaaatacatgtaattattgcattgaaaaacaaaatatttgacttttttaaatgataattgattattttag 6797207  T
Q  292 tatgcttaaagagtg 306  Q
    |||| ||||||||||    
T  6797206 tatgtttaaagagtg 6797192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 33275940 - 33276004
Alignment:
Q  242 attggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||| |||| ||||| ||||||||||||||| ||||||| |||||||| | ||||||||||||||    
T  33275940 attgaaaattgaaatatttaacttttttaaaaaataatttcttgttttagaatgcttaaagagtg 33276004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 335
Target Start/End: Original strand, 14102296 - 14102436
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaa-taattgcttgttttg 290  Q
    |||||||||||||| ||| || ||||||| ||||    ||||||||||  ||||||||||||||| ||||||||||||    || ||||| ||| |||||    
T  14102296 tttaaggactataagtagtaactatttatgaaaaagtgtgtaatcaatgtattggaaatcgaaatatttaacttttttttttaaataatttcttattttg 14102395  T
Q  291 gtatgcttaaagagtgcccgccccggagacactcgttaacaagat 335  Q
    | ||| ||||||||||| |    ||||| ||||||||||||||||    
T  14102396 gcatgtttaaagagtgctc----cggaggcactcgttaacaagat 14102436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 186 - 305
Target Start/End: Original strand, 37617380 - 37617499
Alignment:
Q  186 acattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttg 285  Q
    ||||||||||| ||  |||| |||||||| ||||| |||||  ||| |||||||  |||||||||  |||| ||||| |||||||||||||||||  ||     
T  37617380 acattttttaaagatcataagtagcaagtgtttatgaaaatgtatgcaatcaatgtattggaaataaaaatatttaatttttttaaagaataattattta 37617479  T
Q  286 ttttggtatgcttaaagagt 305  Q
    ||||   |||||||||||||    
T  37617480 ttttaaaatgcttaaagagt 37617499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 309
Target Start/End: Complemental strand, 10204306 - 10204149
Alignment:
Q  155 tttatggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatt--tat-aaaaatacatgtaatcaatacattggaaatc 251  Q
    |||||| |||||||||| ||||||   ||  ||| ||||||||||| |||| ||| || ||||  ||| |||||| |||||||||||| ||||| |||||    
T  10204306 tttatgaaaaatgttaatgagtgcctccgtaacactttttaaggaccataagtagtaaatattagtatgaaaaatgcatgtaatcaatgcattgaaaatc 10204207  T
Q  252 gaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||  ||| | |||||| ||||||||||  || |||||  ||| |||||||||||||    
T  10204206 gaaacatttgaattttttgaagaataattatttattttgtaatggttaaagagtgccc 10204149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 35477693 - 35477778
Alignment:
Q  200 ctataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaac-ttttttaaagaataattgctt 284  Q
    |||||| ||| |||||||| ||||||| ||||| |||| |   |||||||||||||| ||| || |||||||||||||||||||||    
T  35477693 ctataagtagtaagtatttttaaaaatgcatgtcatcattgtcttggaaatcgaaatatttgactttttttaaagaataattgctt 35477778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 12075564 - 12075636
Alignment:
Q  237 aatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||||||||||||| ||||| ||| |||||| ||   |||| || ||| ||||||||||||||||||||||||    
T  12075564 aatacattggaaattgaaatatttgacttttgtatgaaatagtttcttcttttggtatgcttaaagagtgccc 12075636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 19495293 - 19495237
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt 267  Q
    ||||||||||||||||   |||||||||| |||||||||||||||| ||| ||||||    
T  19495293 aagtatttataaaaatgggtgtaatcaatgcattggaaatcgaaatatttgactttt 19495237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 44941108 - 44941192
Alignment:
Q  222 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||| ||||||||||| ||| |||||||||||| ||||||||||||| |  ||| || ||| |||| | || |||||||||||    
T  44941108 aaaatatatgtaatcaatgcatcggaaatcgaaatctttaacttttttataacatactttcttcttttagaatccttaaagagtg 44941192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 9153483 - 9153581
Alignment:
Q  203 taaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaag 302  Q
    ||||||| |||| |||||||||||   |||| ||||| |||||||||| ||| |||||  |||||||||||||||||| |||  ||||| || |||||||    
T  9153483 taaatagtaagt-tttataaaaatttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatccttaaag 9153581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 11001439 - 11001537
Alignment:
Q  190 tttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    |||||||||||||||   || |||||||||| |||| || |||||| |||| |||| |||||||||  ||| || |||||||| ||||||||||| ||||    
T  11001439 tttttaaggactatatggagtaagtatttatgaaaaaacgtgtaattaatatattgaaaatcgaaacatttgac-tttttaaaaaataattgcttatttt 11001537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 334
Target Start/End: Complemental strand, 31513823 - 31513724
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaa 329  Q
    |||||||||| |||||||||||||||  ||||| |||||  || ||||||| ||| |||| | | |||||||||||    |||||||||||||||| |||    
T  31513823 tgtaatcaatgcattggaaatcgaaacatttaaatttttataaaaataatt-cttattttagaaagcttaaagagt----gccccggagacactcgctaa 31513729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 45303627 - 45303580
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaat 239  Q
    ||||||||| |||||||| |||||||||| ||||| ||||||||||||    
T  45303627 tttaaggaccataaatagtaagtatttatgaaaatgcatgtaatcaat 45303580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 20128415 - 20128353
Alignment:
Q  216 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataa 278  Q
    ||||||||||||| |||||||||| |||||||| | | ||  ||| |||||||||||||||||    
T  20128415 tttataaaaatacgtgtaatcaatgcattggaatttgtaacatttgacttttttaaagaataa 20128353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 27948007 - 27948092
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgt-aatcaatacattggaaatcgaaatgtttaacttttttaaagaat 276  Q
    ||||||||  |||| ||| |||||||||| |||||   ||| ||||||| |||||||||||||||  ||| |||||||||||||||    
T  27948007 tttaaggatcataagtagtaagtatttatgaaaatgtgtgttaatcaatgcattggaaatcgaaacatttgacttttttaaagaat 27948092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 32859849 - 32859808
Alignment:
Q  237 aatacattggaaatcgaaatgtttaacttttttaaagaataa 278  Q
    |||||||||||||| ||| ||||| |||||||||||||||||    
T  32859849 aatacattggaaattgaactgtttgacttttttaaagaataa 32859808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 13538468 - 13538388
Alignment:
Q  229 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||| ||||| |||||||||| ||| | ||| | |||||||||||||||||   |  ||| |||||||||||||||||||    
T  13538468 atgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttctaatttagtatgcttaaagagtgccc 13538388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 16944902 - 16944787
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    ||||||||| |||||||| ||  ||| ||||||| |||  ||||| | |||| |||||||||||   |||| ||||||||||| |||| |||||| || |    
T  16944902 aaatgttaaagagtgctc-cgggacactttttaaagacgttaaatggtaagtttttataaaaatttgtgtattcaatacattgaaaattgaaatgattga 16944804  T
Q  263 c-ttttttaaagaataa 278  Q
    | |||||||||||||||    
T  16944803 ctttttttaaagaataa 16944787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 278
Target Start/End: Complemental strand, 17015567 - 17015452
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    ||||||||| |||||||| ||  ||| ||||||| |||  ||||| | |||| |||||||||||   |||| ||||||||||| |||| |||||| || |    
T  17015567 aaatgttaaagagtgctc-cgggacactttttaaagacgttaaatggtaagtttttataaaaatttgtgtattcaatacattgaaaattgaaatgattga 17015469  T
Q  263 c-ttttttaaagaataa 278  Q
    | |||||||||||||||    
T  17015468 ctttttttaaagaataa 17015452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 163 - 277
Target Start/End: Original strand, 42890231 - 42890345
Alignment:
Q  163 aaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaa 262  Q
    ||||||||||||||| ||  |  ||| | ||||| |||||||| |||||||||||| ||||||||||||||||||||  ||||||||||||||||||| |    
T  42890231 aaatgttaacgagtgttcctgggacactctttaatgactataagtagcaagtatttttaaaaatacatgtaatcaatgtattggaaatcgaaatgtttga 42890330  T
Q  263 cttttttaaagaata 277  Q
    |||||||||| ||||    
T  42890331 cttttttaaaaaata 42890345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 188 - 301
Target Start/End: Original strand, 9533512 - 9533625
Alignment:
Q  188 attttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtt 287  Q
    ||||||||| |||||||||||  |||||||||||||||| | |||||||||| ||||| ||||| |||| ||| | ||||| ||| ||||||||||||||    
T  9533512 attttttaaagactataaataataagtatttataaaaatgcgtgtaatcaatgcattgaaaatcaaaatattttattttttaaaaaaataattgcttgtt 9533611  T
Q  288 ttggtatgcttaaa 301  Q
    ||| ||||||||||    
T  9533612 ttgatatgcttaaa 9533625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 42911169 - 42911060
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||  | ||||| |||| ||||||||  ||||||||||||||||||||||| |||| |    
T  42911169 tttaaggactatatgtagaaagtatttataaaaatacatgtaatcggtgcattgaaaattgaaatgttcgacttttttaaagaataattgcttattttag 42911070  T
Q  292 tatgcttaaa 301  Q
    ||| ||||||    
T  42911069 tatacttaaa 42911060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 1360645 - 1360531
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    |||||||||||||| ||| | |||||||||||||    |||||||||| |||||||||||||||  ||||||||||||||| ||||||| ||  ||||||    
T  1360645 tttaaggactataagtagtatgtatttataaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaacttttttaaaaaataattactaattttgg 1360546  T
Q  292 tatgcttaaagagtg 306  Q
     ||||||||||||||    
T  1360545 aatgcttaaagagtg 1360531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 192 - 306
Target Start/End: Original strand, 10031918 - 10032032
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    |||||||||||||||||| | |||||||| ||||    |||||||||| |||||||||||||||  ||||||||||| ||| ||||||| ||  ||||||    
T  10031918 tttaaggactataaatagtatgtatttatgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaactttttaaaaaaataattactaattttgg 10032017  T
Q  292 tatgcttaaagagtg 306  Q
     ||||||||||||||    
T  10032018 aatgcttaaagagtg 10032032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 33887869 - 33887963
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||||| |||||| ||||||||||| ||||| |||| ||||| ||| |||||||||||||||||||  || |||||| ||||||||||||||    
T  33887869 aagtatttatgaaaata-atgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatttattttggaatgcttaaagagtg 33887963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 15995983 - 15995905
Alignment:
Q  207 tagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactt-ttttaaagaataattgctt 284  Q
    ||||||||| |||| ||||||  |||||||||| ||||| |||||||||| |||||||| |||||||||||| ||||||    
T  15995983 tagcaagtaattatgaaaatatgtgtaatcaatgcattgaaaatcgaaatatttaactttttttaaagaatagttgctt 15995905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 40065799 - 40065865
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaata 277  Q
    ||||||||||||||||||||||| || ||  |||| ||||| |||| ||||||||||||||||||||    
T  40065799 aagtatttataaaaatacatgtattcgatgtattgaaaatcaaaatatttaacttttttaaagaata 40065865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 3256643 - 3256736
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt-ttaaagaataattgcttgttttggtatgcttaaaga 303  Q
    |||||||||| ||||||  |||| ||| | |||||||||||||||  ||| |||||| ||||||||||||||||| |||||  |||||||||||    
T  3256643 aagtatttatgaaaatatgtgtattcagtgcattggaaatcgaaacatttgactttttttaaagaataattgcttattttgaaatgcttaaaga 3256736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 160 - 255
Target Start/End: Original strand, 46127982 - 46128077
Alignment:
Q  160 ggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaa 255  Q
    ||||||||||||||||||  |  |||| | |||||||||| |||||||||||||||||||| |||| |  || ||||||| ||||| |||| ||||    
T  46127982 ggaaaatgttaacgagtgtccctgataaactttttaaggattataaatagcaagtatttatgaaaaaatgtgcaatcaatccattgaaaattgaaa 46128077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 334
Target Start/End: Complemental strand, 47507681 - 47507581
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaa 329  Q
    |||||||||||||| |||||| ||||| ||| | ||||||| | ||| ||| ||| |||| | || ||||||||||    ||||||||||||||||||||    
T  47507681 tgtaatcaatacatcggaaattgaaatctttgatttttttataaaattatttcttcttttagaatccttaaagagt----gccccggagacactcgttaa 47507586  T
Q  330 caaga 334  Q
    |||||    
T  47507585 caaga 47507581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 44719424 - 44719484
Alignment:
Q  223 aaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgct 283  Q
    |||| ||||||||||||   || ||||||||||||||| ||||||||||| ||||||||||    
T  44719424 aaatgcatgtaatcaatgttttagaaatcgaaatgtttgacttttttaaaaaataattgct 44719484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 8920737 - 8920815
Alignment:
Q  229 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgc 307  Q
    ||||||||||| |||||||||| ||||  ||| |||||| ||  |||||||| ||  |||||| |||||||||||||||    
T  8920737 atgtaatcaatgcattggaaattgaaacatttgacttttctatggaataatttctccttttggaatgcttaaagagtgc 8920815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 284
Target Start/End: Complemental strand, 14574843 - 14574749
Alignment:
Q  191 ttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactt-ttttaaagaataattgctt 284  Q
    ||||||| || |||| || |||| | |||| ||||||  |||||||||| ||||| |||||||| | |||||||| |||||||||||| ||||||    
T  14574843 ttttaagaaccataagtaacaagcaattatgaaaatatgtgtaatcaatgcattgaaaatcgaagtatttaactttttttaaagaatagttgctt 14574749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 676395 - 676483
Alignment:
Q  217 ttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||||||  |||||||||| ||||  |||||||||| |||||| |||||||  ||||||| ||| |||| | ||| ||||||||||    
T  676395 ttataaaaatatgtgtaatcaatgcatttaaaatcgaaatatttaac-tttttaataaataattacttattttagaatgtttaaagagtg 676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 306
Target Start/End: Original strand, 28733764 - 28733869
Alignment:
Q  202 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaactttt-ttaaagaataattgcttgttttggtatgcttaa 300  Q
    |||||||| || ||||| ||||||| |||||||||| |    ||||| || |||| |||||||||| |||||||||||||| || ||||   ||||||||    
T  28733764 ataaatagaaaatatttttaaaaatgcatgtaatcattgtcatggaattcaaaatatttaactttttttaaagaataattgtttattttaaaatgcttaa 28733863  T
Q  301 agagtg 306  Q
    ||||||    
T  28733864 agagtg 28733869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 5248671 - 5248747
Alignment:
Q  233 aatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||| |||||||||| | | | |||||| |||||||||||||||| |||  || || || ||||||||||||||    
T  5248671 aatcaatgcattggaaattggagtttttaacatttttaaagaataatttctttattaggaatccttaaagagtgccc 5248747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 17157804 - 17157884
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaag-aataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||||||||| |||||||||| ||||  ||| |||||||| | | ||||||| ||  |||||| |||||||||||||||||    
T  17157804 tgtaatcaatgcattggaaattgaaacatttgactttttttatggaataatttctccttttggaatgcttaaagagtgccc 17157884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 28770537 - 28770448
Alignment:
Q  241 cattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagacactcgttaacaaga 334  Q
    |||||||||| | |||  || ||||||  ||||||||||| ||  |||||| |||||||||||||    ||||||||| |||||||||||||||    
T  28770537 cattggaaattgtaatagttgacttttcaaaagaataattactaattttgggatgcttaaagagt----gccccggaggcactcgttaacaaga 28770448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 32017414 - 32017532
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaa-tacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttg 290  Q
    ||||||| ||||||| |||||||||||||||||| |    ||||||||| ||||| |||| ||||| ||| |||||||||||||||||||||||||||||    
T  32017414 tttaagggctataaagagcaagtatttataaaaaatgtgagtaatcaatgcattgaaaattgaaatattttacttttttaaagaataattgcttgttttg 32017513  T
Q  291 gtatgcttaaagagtgccc 309  Q
     |||| |||||||||||||    
T  32017514 atatgtttaaagagtgccc 32017532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 34032097 - 34032204
Alignment:
Q  202 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 301  Q
    |||| ||| |||||||| ||||||| |||||||||| | | || ||||| ||||| ||||||||||||||||||||||| ||| |||| | |||||||||    
T  34032097 ataagtagtaagtatttttaaaaatgcatgtaatcattgcctttgaaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaaa 34032196  T
Q  302 gagtgccc 309  Q
    ||||||||    
T  34032197 gagtgccc 34032204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 27833287 - 27833376
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattg 281  Q
    ||||||||| | |||||| |||||||||| ||||| |||||||||||| ||||| |||||||||| ||| |||||| |||||||||||||    
T  27833287 tttaaggaccacaaatagtaagtatttatgaaaatgcatgtaatcaatgcattgtaaatcgaaatatttgacttttgtaaagaataattg 27833376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 306
Target Start/End: Original strand, 10145305 - 10145451
Alignment:
Q  160 ggaaaatgttaacgagtgctctcgatacattttttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtt 259  Q
    ||||||||||||||||||| | |||  || | ||||||| ||  |||||| ||||||||||||||||   |||||| ||| ||||  ||||| |||| ||    
T  10145305 ggaaaatgttaacgagtgcccccgaggcactctttaagggctggaaatagtaagtatttataaaaatgtgtgtaattaatgcattcaaaatcaaaatatt 10145404  T
Q  260 taacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    | |||||||||||||||| ||  || ||||||| |||||||||||||    
T  10145405 ttacttttttaaagaatatttatttattttggtgtgcttaaagagtg 10145451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 17098205 - 17098321
Alignment:
Q  214 tatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccc 313  Q
    ||||| |||||||  ||||||||| |   |||||||||||||| ||| ||||||||||| ||||||||||| |||||  ||| |||||||||    ||||    
T  17098205 tatttttaaaaatgaatgtaatcattgtcttggaaatcgaaatatttgacttttttaaataataattgcttattttgtgatgtttaaagagt----gccc 17098300  T
Q  314 cggagacactcgttaacaaga 334  Q
    ||| |||||||||||||||||    
T  17098301 cggcgacactcgttaacaaga 17098321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 26663706 - 26663635
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 301  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| |||| | |||||||||    
T  26663706 tgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaaa 26663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 26935301 - 26935230
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaa 301  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||| |||| | |||||||||    
T  26935301 tgtaatcaatacattggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaaa 26935230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 27016743 - 27016663
Alignment:
Q  229 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||||||| || |||||||||| ||||| ||| |||||||||  |||||||| ||| |||||| |||||||||||||||||    
T  27016743 atgtaatcgatgcattggaaattgaaatttttgacttttttatggaataatttcttcttttggaatgcttaaagagtgccc 27016663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 8761999 - 8761922
Alignment:
Q  229 atgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||| |||||||||||| |||| ||||| ||||||||||||| ||||||||| ||| |||| | || |||||||||||    
T  8761999 atgtcatcaatacattgaaaattgaaatatttaacttttttatagaataatttctttttttagaatccttaaagagtg 8761922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 779192 - 779078
Alignment:
Q  194 taaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggta 293  Q
    |||||||||||||||| | |||||||  ||||    |||||||||| |||||||||||||||  ||||||| ||||||| ||||||| ||  |||| | |    
T  779192 taaggactataaatagtatgtatttacgaaaaagtgtgtaatcaatgcattggaaatcgaaacatttaact-ttttaaaaaataattactaatttttgaa 779094  T
Q  294 tgcttaaagagtgccc 309  Q
    || |||||||||||||    
T  779093 tgtttaaagagtgccc 779078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 306
Target Start/End: Complemental strand, 36160409 - 36160314
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||||| ||||  | |||||| |||| |||| ||||| |||  ||| ||||||||||| ||||||||||| |||| | ||||||||||||||    
T  36160409 aagtatttatgaaaaatcgtgtaattaatatattgaaaatcaaaacatttgacttttttaaaaaataattgcttattttagaatgcttaaagagtg 36160314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 42338033 - 42338072
Alignment:
Q  221 aaaaatacatgtaatcaatacattggaaatcgaaatgttt 260  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  42338033 aaaaatacatgtaatcaatgcattggaaatcgaaatgttt 42338072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 28793417 - 28793306
Alignment:
Q  219 ataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggag 318  Q
    ||||||||| ||||||| ||| ||| |||||||||||| ||| ||||||||| | ||| ||| ||| |||||| || |||||||||    ||| |||||     
T  28793417 ataaaaatatatgtaattaatgcatcggaaatcgaaatatttgacttttttataaaatcatttcttcttttggaatccttaaagag----cgcaccggaa 28793322  T
Q  319 acactcgttaacaaga 334  Q
     |||||||||||||||    
T  28793321 gcactcgttaacaaga 28793306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 39382490 - 39382556
Alignment:
Q  240 acattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||| ||||  |||| ||||||||||| |||||||||||| ||| ||||| ||||||||||||||    
T  39382490 acattgaaaataaaaatatttaactttttaaaagaataattgtttgatttggaatgcttaaagagtg 39382556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 42337986 - 42338019
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaa 225  Q
    ||||||||||||||||||||||||||||||||||    
T  42337986 tttaaggactataaatagcaagtatttataaaaa 42338019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 141911 - 141867
Alignment:
Q  262 acttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    ||||||| |||||||||||| || |||||||||||||||||||||    
T  141911 actttttaaaagaataattgtttattttggtatgcttaaagagtg 141867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 967181 - 967074
Alignment:
Q  222 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgcccgccccggagaca 321  Q
    ||||| |||||| ||||| |||||||||| ||| | ||| | ||||||||||||||||  | |  |||||||||||||||||||      | ||||||||    
T  967181 aaaattcatgtattcaatgcattggaaattgaactatttgaattttttaaagaataatatcctaatttggtatgcttaaagagt-----acgcggagaca 967087  T
Q  322 ctcgttaacaaga 334  Q
    |||||||||||||    
T  967086 ctcgttaacaaga 967074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 2816258 - 2816174
Alignment:
Q  221 aaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagt 305  Q
    |||||| |||||||||| |   ||| |||| ||||| ||| | ||||||||||||||||||||| |||||  |||||||||||||    
T  2816258 aaaaatgcatgtaatcattgtcttgaaaattgaaatatttgatttttttaaagaataattgcttcttttgaaatgcttaaagagt 2816174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 1354375 - 1354442
Alignment:
Q  222 aaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    |||||| || ||||||||| ||| ||||||||||| ||||||||||||| | ||||||| ||| ||||    
T  1354375 aaaatatatataatcaatatattagaaatcgaaatatttaacttttttataaaataatttcttttttt 1354442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 309
Target Start/End: Complemental strand, 3263818 - 3263739
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| | ||| ||| ||| |||||  || ||||||||||||||    
T  3263818 tgtaatcaatgcatcggaaatcgaaatctttgacttttttataaaatgatttcttcttttgaaattcttaaagagtgccc 3263739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 3758266 - 3758195
Alignment:
Q  235 tcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    ||||| ||||| |||||||||| ||| |||||||||||||||||||| || ||||   ||| ||||||||||    
T  3758266 tcaatgcattgaaaatcgaaatatttgacttttttaaagaataattgattattttaaaatgtttaaagagtg 3758195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 7211000 - 7210950
Alignment:
Q  230 tgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 280  Q
    |||| |||||||||||||| | ||| |||||||||||||||| ||||||||    
T  7211000 tgtattcaatacattggaatttgaagtgtttaacttttttaacgaataatt 7210950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 8247136 - 8247062
Alignment:
Q  232 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtg 306  Q
    |||||||| ||| |||||||||||| ||| ||||||||| | ||| ||| ||| |||||| || |||||||||||    
T  8247136 taatcaatgcatcggaaatcgaaatatttgacttttttataaaattatttcttcttttggaatccttaaagagtg 8247062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 309
Target Start/End: Complemental strand, 16161504 - 16161411
Alignment:
Q  216 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtatgcttaaagagtgccc 309  Q
    ||||||||||||  |||| | ||| ||||| |||| ||| | |||||||||||| || ||||||| | |  ||||| |||||||||||||||||    
T  16161504 tttataaaaatatgtgtatttaatccattgaaaattgaattatttaactttttttaaaaataatttcctaatttggaatgcttaaagagtgccc 16161411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 14042532 - 14042484
Alignment:
Q  232 taatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 280  Q
    |||||||| ||||||||||| |||| ||| ||||||||||| |||||||    
T  14042532 taatcaatgcattggaaatcaaaatatttgacttttttaaataataatt 14042484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 39099961 - 39099889
Alignment:
Q  211 aagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgttt-aacttttttaaa-gaataattg 281  Q
    |||||||||||||||||  |||| || || ||||| |||||||||| ||| |||||||||||| |||||||||    
T  39099961 aagtatttataaaaatatgtgtattcgatgcattgaaaatcgaaatatttgaacttttttaaaggaataattg 39099889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 306
Target Start/End: Complemental strand, 189178 - 189064
Alignment:
Q  192 tttaaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttgg 291  Q
    ||||| ||| |||||||  |||||||||| ||||||  |||||| |||  ||| ||||| ||||| ||||||||||||||||||||||||||| ||||      
T  189178 tttaatgaccataaataataagtatttatgaaaatatgtgtaattaatgtattagaaatagaaatatttaacttttttaaagaataattgcttattttaa 189079  T
Q  292 tatgcttaaagagtg 306  Q
     ||||||||||||||    
T  189078 aatgcttaaagagtg 189064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 306
Target Start/End: Original strand, 11664 - 11775
Alignment:
Q  195 aaggactataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgttttggtat 294  Q
    ||||| ||||| ||| || ||||||| |||| |  |||||||||  |||| ||||||||||  ||| |||||| |||| | ||||||||| |||||  ||    
T  11664 aaggattataagtagtaactatttatgaaaaaatgtgtaatcaaagcatttgaaatcgaaacatttgacttttctaaaaattaattgcttattttgaaat 11763  T
Q  295 gcttaaagagtg 306  Q
    ||||||||||||    
T  11764 gcttaaagagtg 11775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 39004 - 38917
Alignment:
Q  202 ataaatagcaagtatttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataattgcttgtttt 289  Q
    |||||||| || |||||||||||||||||| |||||||   || |||||| | ||||||||| ||||||||  |||||| ||| ||||    
T  39004 ataaatagtaaatatttataaaaatacatgcaatcaatgtcttagaaatcaacatgtttaacatttttaaaagataattacttatttt 38917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 219275 - 219211
Alignment:
Q  216 tttataaaaatacatgtaatcaatacattggaaatcgaaatgtttaacttttttaaagaataatt 280  Q
    |||||||||||| ||||| | ||| |||||||||| ||| | ||| |||||| ||||||||||||    
T  219275 tttataaaaatatatgtatttaatgcattggaaattgaactatttgacttttgtaaagaataatt 219211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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