View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8752_high_8 (Length: 360)
Name: NF8752_high_8
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_high_8 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 342
Target Start/End: Complemental strand, 54641649 - 54641320
Alignment:
| Q |
12 |
ttatgggaccctggtggacacttttgttatacttcaaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54641649 |
ttatgggaccctggtggacacttttgttatacttcaaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagag-- |
54641552 |
T |
|
| Q |
112 |
atgtagaaaatgcccatatgcatgtcatgattgtggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54641551 |
atgtagaaaatgcccatatgcatgtcatgattgtggaaatggaacaagagagcaaaacggatttgtgcaaacttctttgcaataaagaaatgagaatggg |
54641452 |
T |
|
| Q |
211 |
gtcagagataaggggaactactatgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54641451 |
gtcagagataaggggaactactatgggcaccacgacatcaatcatcctgtatttttttatcaaaaatatcactacaaacagagtatatgatcaaggcata |
54641352 |
T |
|
| Q |
311 |
agtttgcatgattcacacatcaccctgtcatt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
54641351 |
agtttgcatgattcacacatcaccctgtcatt |
54641320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 46 - 327
Target Start/End: Complemental strand, 54641955 - 54641675
Alignment:
| Q |
46 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
54641955 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtacaaatggggaaaatagagaga--tgtagaaaatgcccgtatgcatgtcatgattgt |
54641858 |
T |
|
| Q |
146 |
ggaaatggaacaagagagcaaa-cggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
244 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54641857 |
ggaaatggaacaggagagcaaaacggatttgtgcaaacttctttgcaatagagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
54641758 |
T |
|
| Q |
245 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcaca |
327 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54641757 |
acatcaatcatcctgtatttttttatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcaca |
54641675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 46 - 342
Target Start/End: Complemental strand, 54938440 - 54938142
Alignment:
| Q |
46 |
caaatcccaccgcgataggagaagagaaaggctgggaag-atgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattg |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
54938440 |
caaatcccaccgcgataggagaagagaaaggtttggaaggatgaagaaatggggaaaatagagagatatgtagaaaatgcccatatgcatgtcatgatta |
54938341 |
T |
|
| Q |
145 |
tggaaatggaacaagagagcaaa-cggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccac |
243 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
54938340 |
tggaaatggaacaggagagcaaaacggatttgtgcaaacttaattgcaataaagaaatgagtatggggtcagagataagggggactactatgggcaccac |
54938241 |
T |
|
| Q |
244 |
gacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcaccctgtcatt |
342 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |
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|
| T |
54938240 |
aacatcaatcatccagtatttttttctcaaaaatatcactacaaacagagtatatgatcagggcataagtttgcatgattcacacatcgctctgtcatt |
54938142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 46 - 329
Target Start/End: Original strand, 13078070 - 13078354
Alignment:
| Q |
46 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
13078070 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
13078169 |
T |
|
| Q |
146 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
244 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
13078170 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
13078269 |
T |
|
| Q |
245 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacaca |
329 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
13078270 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacaca |
13078354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 46 - 329
Target Start/End: Complemental strand, 39984414 - 39984130
Alignment:
| Q |
46 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
39984414 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
39984315 |
T |
|
| Q |
146 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
244 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
39984314 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
39984215 |
T |
|
| Q |
245 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacaca |
329 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39984214 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacaca |
39984130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 46 - 329
Target Start/End: Original strand, 14685096 - 14685380
Alignment:
| Q |
46 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
14685096 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
14685195 |
T |
|
| Q |
146 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
244 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
14685196 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
14685295 |
T |
|
| Q |
245 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacaca |
329 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14685296 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacaca |
14685380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 46 - 329
Target Start/End: Original strand, 21306952 - 21307236
Alignment:
| Q |
46 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
21306952 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
21307051 |
T |
|
| Q |
146 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
244 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21307052 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
21307151 |
T |
|
| Q |
245 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacaca |
329 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21307152 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacaca |
21307236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 46 - 329
Target Start/End: Original strand, 40421920 - 40422204
Alignment:
| Q |
46 |
caaatcccaccgcgataggagaagagaaaggctgggaagatgtagaaatggggaaaatagagagaaatgtagaaaatgcccatatgcatgtcatgattgt |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
40421920 |
caaatcccaccgcgataggagaagagaaaggttgggaagatgtagaaatggggaaaatagagagagatgtagaaaatgtccatatgcatgtcatgattgt |
40422019 |
T |
|
| Q |
146 |
ggaaatggaacaagagagc-aaacggatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactatgggcaccacg |
244 |
Q |
| |
|
|||||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40422020 |
ggaaatgggacaggagagcaaaacagatttgtgcaaacttctttgcaataaagaaatgagtatggggtcagagataaggggaactactgtgggcaccacg |
40422119 |
T |
|
| Q |
245 |
acatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacaca |
329 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40422120 |
acatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacaca |
40422204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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