View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8752_low_1 (Length: 811)
Name: NF8752_low_1
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_low_1 |
 | |
|
| [»] scaffold0196 (2 HSPs) |
| | |
|
| [»] scaffold0019 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 623; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 12 - 798
Target Start/End: Complemental strand, 11629756 - 11628972
Alignment:
| Q |
12 |
aagcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629756 |
aagcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggag |
11629657 |
T |
|
| Q |
112 |
ctgcaacgattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctc |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629656 |
ctgcaacaattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctc |
11629557 |
T |
|
| Q |
212 |
gaatgagtggttgatccaacggttagaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttccccctggaacattcacctca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629556 |
gaatgagtggttgatccaacggttagaaacaatcagtgcagttcttctcactgctgcagcactttgcatggttatgcttccccctggaacattcacctca |
11629457 |
T |
|
| Q |
312 |
ggtgagaatttggttgttaatatctcgaagatatcgttgtctaagtattgtaattatactcaaatcannnnnnnatgctaaaacaatagcattatctttc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
11629456 |
ggtgagaatttggttgttaatatctcgaagatatcgttgtctgagtattgtaattatactcaaatcatttttttatgctaaaacaataacattatctttc |
11629357 |
T |
|
| Q |
412 |
ttgatgcaagtttctaaatttcaacatctttcattccaggaattatcggcatggctctatcttatggcctttcattaaacaattccttagtattttcaat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629356 |
ttgatgcaagtttctaaatttcaacatctttcattccaggaattatcggcatggctctatcttatggcctttcattaaacaattccttagtattttcaat |
11629257 |
T |
|
| Q |
512 |
tcaaaatcaatgcactgttgcaaatcacataatatcagtagagaggctaaaacaatatatgcatatagaaagtgaggcggaagaaatagtagccgaaaat |
611 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
11629256 |
tcaaaatcaatgcactgttgctaatcacataatatcagtagagaggctaaaacaatacatgcatatagaaagtgaggcgaaagaaatagtagaagaaaac |
11629157 |
T |
|
| Q |
612 |
cgtcctccttcaaattggccagttgccggcaaagtagaaatcaataacttgaaggtaattgttacannnnnnncataatttaaagaatgatattcacnnn |
711 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||| | || ||||| ||||||||||||| | |
|
|
| T |
11629156 |
cgtcctccttcgtattggccagttgccggcaaagtagaaataaataatttgaaggtaattctta-aatattttcaaaatttgaagaatgatattcgc-aa |
11629059 |
T |
|
| Q |
712 |
nnnntgcagtttaaatgaaccaactaactattttgtttttaccatgtcagatacgatacaggtctaatggaccacttgtacttcatg |
798 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629058 |
aaaatgcagcttaaatgaaccaactaattattttgtttttaccaagtcagatacgatacaggtctaatggaccacttgtacttcatg |
11628972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 325
Target Start/End: Original strand, 11620656 - 11620969
Alignment:
| Q |
12 |
aagcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggag |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
11620656 |
aagcagagatactactttgcctcagcaaaagaactaatgcggttgaatggcacaacaaaatcctctttagcgaatcatgtagccgaaactgttgctggag |
11620755 |
T |
|
| Q |
112 |
ctgcaacgattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctc |
211 |
Q |
| |
|
||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11620756 |
ctgtaacaataagggcttttgagggggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgctttttttcatagttttgcctc |
11620855 |
T |
|
| Q |
212 |
gaatgagtggttgatccaacggttagaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttccccctggaacattcacctca |
311 |
Q |
| |
|
|| || |||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
11620856 |
aaacgaatggttgatccaacgattagaaacactcagtgcagttgttctcgccgctgcaacactttgcatggttatgcttcctcccggaacattcccctca |
11620955 |
T |
|
| Q |
312 |
ggtgagaatttggt |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11620956 |
ggtgagaatttggt |
11620969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 11671667 - 11671359
Alignment:
| Q |
12 |
aagcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggag |
111 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||| |
|
|
| T |
11671667 |
aagcagcgatactactttgcggtagcaaaagaagtaatgaggataaatggcacaacaaaatcctctatagctaatcatgtagctgaaactgttgctggag |
11671568 |
T |
|
| Q |
112 |
ctgcaacgattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctc |
211 |
Q |
| |
|
|| || || ||||||||| ||||||| | || ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
11671567 |
ctatgacaataagggcttttaaggaggaggctcattcttttgagaagaacctttgtctaattgatttaaatgctagtgcttttttccatagttttgcttc |
11671468 |
T |
|
| Q |
212 |
gaatgagtggttgatccaacggttagaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttccccctggaacattcacctca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||||||| |
|
|
| T |
11671467 |
aaatgagtggttgatccaacggttagaaacaatcagtgcagtcgttctcactgctgcagcactttgcatagttatgctaccctctggaactttcacctca |
11671368 |
T |
|
| Q |
312 |
ggtgagaat |
320 |
Q |
| |
|
||| ||||| |
|
|
| T |
11671367 |
ggtaagaat |
11671359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 390 - 668
Target Start/End: Complemental strand, 11671284 - 11671006
Alignment:
| Q |
390 |
taaaacaatagcattatctttcttgatgcaagtttctaaatttcaacatctttcattccaggaattatcggcatggctctatcttatggcctttcattaa |
489 |
Q |
| |
|
|||||||||| ||| ||| | ||||| |||||||||||| | || || | ||||||||||||||||| |||||||||||| |||||||||||||| ||| |
|
|
| T |
11671284 |
taaaacaataacatcgtctattttgattcaagtttctaaactccatcacccttcattccaggaattattggcatggctctaacttatggcctttcactaa |
11671185 |
T |
|
| Q |
490 |
acaattccttagtattttcaattcaaaatcaatgcactgttgcaaatcacataatatcagtagagaggctaaaacaatatatgcatatagaaagtgaggc |
589 |
Q |
| |
|
|| | ||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
11671184 |
acggtgccttaatattttcaattcaaaatcaatgcactcttgcaaataacataatatcagtagagaggctaaatcaatatatgcatatagaaagtgaagc |
11671085 |
T |
|
| Q |
590 |
ggaagaaatagtagccgaaaatcgtcctccttcaaattggccagttgccggcaaagtagaaatcaataacttgaaggta |
668 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||||||||| ||| ||||||||||| |
|
|
| T |
11671084 |
ggaagaaatagtagaagaaaatcgttctccttcgaattggccagttgctggcaaagtagaaataaatgacttgaaggta |
11671006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 11708035 - 11707724
Alignment:
| Q |
12 |
aagcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggag |
111 |
Q |
| |
|
||||||||||||||||| || ||||||||| | |||||||| | ||||||||| ||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
11708035 |
aagcagagatactacttcaccgcagcaaaagaagtgatgcggataagtggcacaacgaaatcctttctagctaatcatgtagctgaaactgttgccggag |
11707936 |
T |
|
| Q |
112 |
ctgcaacgattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctc |
211 |
Q |
| |
|
| | || || ||||||||||||||||||||||||| ||| ||||||| |||||||||||||| | |||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
11707935 |
cagtgacaataagggcttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagtgcattttttcataattttgcctc |
11707836 |
T |
|
| Q |
212 |
gaatgagtggttgatccaacggttagaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttccccctggaacattcacctca |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||| |||||| || |||||||||||||||||||||| ||||| | || || |||||||| |
|
|
| T |
11707835 |
aaacgagtggttgatccaacggttagaaacaattggtgcaggtgttcttgcctctgcagcactttgcatggttatacttccatcagggactttcacctct |
11707736 |
T |
|
| Q |
312 |
ggtgagaatttg |
323 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11707735 |
ggtgagaatttg |
11707724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 419 - 672
Target Start/End: Original strand, 11621064 - 11621317
Alignment:
| Q |
419 |
aagtttctaaatttcaacatctttcattccaggaattatcggcatggctctatcttatggcctttcattaaacaattccttagtattttcaattcaaaat |
518 |
Q |
| |
|
|||||||||||| | | |||| ||||||||||||||||| |||||||||||| |||||||||| ||| ||||| | ||||| ||||| ||||||||||| |
|
|
| T |
11621064 |
aagtttctaaatgttaccatccttcattccaggaattattggcatggctctaacttatggcctatcactaaacggtgccttaatatttgcaattcaaaat |
11621163 |
T |
|
| Q |
519 |
caatgcactgttgcaaatcacataatatcagtagagaggctaaaacaatatatgcatatagaaagtgaggcggaagaaatagtagccgaaaatcgtcctc |
618 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||| ||| | ||||||||||| |
|
|
| T |
11621164 |
caatgcactcttgctaatcacataatatcagtagagaggctaaatcaatatatgcatatacaaagcgaggccgaagaaattatagaaggaaatcgtcctc |
11621263 |
T |
|
| Q |
619 |
cttcaaattggccagttgccggcaaagtagaaatcaataacttgaaggtaattg |
672 |
Q |
| |
|
||| |||||||||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
11621264 |
ctttgaattggccagttgctggagaagtagaaataaataacttgaaggtaattg |
11621317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 11665499 - 11665779
Alignment:
| Q |
12 |
aagcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggag |
111 |
Q |
| |
|
||||||||||||||||| || ||||||||| | ||||| || | ||||||||| ||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
11665499 |
aagcagagatactacttcaccgctgcaaaagaagtgatgcgtataagtggcacaacgaaatcctatgtagctaatcatgtagctgaaactgttgccggag |
11665598 |
T |
|
| Q |
112 |
ctgcaacgattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctc |
211 |
Q |
| |
|
| | || || || |||||||||||||||||||| | |||||||||||| ||||||||||| || | |||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
11665599 |
cagtgacaataagagcttttgaggaggaagatcgcttttttgagaagaatcttgatctaatagacattaatgctagtgcattttttcataattttgcctc |
11665698 |
T |
|
| Q |
212 |
gaatgagtggttgatccaacggttagaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttcc |
292 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| | |||| || || |||| |||||||||||||||||||| |
|
|
| T |
11665699 |
aaatgagtggttgatcctacggttagaaacaataggtgcaagtcttcttgccactacagcgctttgcatggttatgcttcc |
11665779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 425 - 676
Target Start/End: Complemental strand, 11707620 - 11707369
Alignment:
| Q |
425 |
ctaaatttcaacatctttcattccaggaattatcggcatggctctatcttatggcctttcattaaacaattccttagtattttcaattcaaaatcaatgc |
524 |
Q |
| |
|
||||||||||| || |||||||||||| |||| |||||||||||||||||||||||| || |||| || ||||||| |||||||||| ||| ||| |
|
|
| T |
11707620 |
ctaaatttcaatttccttcattccaggatttattggcatggctctatcttatggccttgcactaaattcttacttagtaaattcaattcaatgtcagtgc |
11707521 |
T |
|
| Q |
525 |
actgttgcaaatcacataatatcagtagagaggctaaaacaatatatgcatatagaaagtgaggcggaagaaatagtagccgaaaatcgtcctccttcaa |
624 |
Q |
| |
|
||| |||||||||| ||||||||||| ||||||||| | ||||||||||||||| |||||||||| ||||||| |||| | |||||| ||||||| | |
|
|
| T |
11707520 |
actcttgcaaatcagataatatcagttgagaggctagatcaatatatgcatatacaaagtgaggccaaagaaatcgtagaaggaaatcgccctcctttga |
11707421 |
T |
|
| Q |
625 |
attggccagttgccggcaaagtagaaatcaataacttgaaggtaattgttac |
676 |
Q |
| |
|
| |||||| |||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
11707420 |
actggccaattgcaggcaaagtagaaataaatgacttgaaggtaattgttac |
11707369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 36 - 292
Target Start/End: Complemental strand, 11737388 - 11737132
Alignment:
| Q |
36 |
gcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggagctgcaacgattagggcttttgagg |
135 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| || || |||||||| |||| |
|
|
| T |
11737388 |
gcaaaagaacttatgcggatgaatggcacaacaaaatcatctatagctaatcatgtagctgaaagtgttgctggagctattacaataagggctttcgagg |
11737289 |
T |
|
| Q |
136 |
aggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctcgaatgagtggttgatccaacggtt |
235 |
Q |
| |
|
| |||||||||| ||| | ||||| ||| || |||||||| ||||| |||||||| ||||| |||||||| || ||||||||||||||||||||| | |
|
|
| T |
11737288 |
aagaagatcgttttttcaacaagaatcttaatttaattgatgtcaatgcgagtgctttcttccacagttttgcatcaaatgagtggttgatccaacgggt |
11737189 |
T |
|
| Q |
236 |
agaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttcc |
292 |
Q |
| |
|
||||||| |||||||||||| | |||| ||||||||||| | ||||||||| |
|
|
| T |
11737188 |
agaaacagcgtatgcagttgttcttgcttctgcggcactttgcattgctatgcttcc |
11737132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 425 - 652
Target Start/End: Original strand, 11665914 - 11666141
Alignment:
| Q |
425 |
ctaaatttcaacatctttcattccaggaattatcggcatggctctatcttatggcctttcattaaacaattccttagtattttcaattcaaaatcaatgc |
524 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||| | |||||||| ||| || |||| |||||| |||| | ||| ||||| ||||||| |
|
|
| T |
11665914 |
ctaaatttcaatttccttcattccaggatatatcggcatggctttgtcttatggtcttacactaaatgcttccttggtatatacaactcaaattcaatgc |
11666013 |
T |
|
| Q |
525 |
actgttgcaaatcacataatatcagtagagaggctaaaacaatatatgcatatagaaagtgaggcggaagaaatagtagccgaaaatcgtcctccttcaa |
624 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |||| | ||||| |||||||| | |
|
|
| T |
11666014 |
actcttgcaaatcatataatatcagtagagaggctaaatcaatatatgcatatacaaagtgaggctaaagaaattgtagaaggaaatcatcctcctttga |
11666113 |
T |
|
| Q |
625 |
attggccagttgccggcaaagtagaaat |
652 |
Q |
| |
|
||||||||||||| |||||||| ||||| |
|
|
| T |
11666114 |
attggccagttgcaggcaaagtcgaaat |
11666141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 36 - 242
Target Start/End: Complemental strand, 12090911 - 12090705
Alignment:
| Q |
36 |
gcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggagctgcaacgattagggcttttgagg |
135 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||| || || || |||||||||| |
|
|
| T |
12090911 |
gcaaaagaacttatgcggatgaatggcacaacaaaatcgtccgttgctaatcatgtagctgaaactgttgctggagctatgacaataagagcttttgagg |
12090812 |
T |
|
| Q |
136 |
aggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctcgaatgagtggttgatccaacggtt |
235 |
Q |
| |
|
| |||||||| | ||| | ||||| |||||| |||||||| ||||| | |||||| ||||||||||||||||| ||||| ||| ||||||||||| | |
|
|
| T |
12090811 |
aagaagatcggtttttcaacaagaatcttgatttaattgatgtcaatgctactgctttcttccatagttttgcctcaaatgaatggctgatccaacgggt |
12090712 |
T |
|
| Q |
236 |
agaaaca |
242 |
Q |
| |
|
||||||| |
|
|
| T |
12090711 |
agaaaca |
12090705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 11758515 - 11758721
Alignment:
| Q |
36 |
gcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggagctgcaacgattagggcttttgagg |
135 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||| | ||||||||||||||||||||||| ||| ||||| || || ||||||||||||| |
|
|
| T |
11758515 |
gcaaaagaacttatgcggatgaatggcacgactaaatccgctgtagctaatcatgtagctgaaactactgctggagcaatgacaataagggcttttgagg |
11758614 |
T |
|
| Q |
136 |
aggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctcgaatgagtggttgatccaacggtt |
235 |
Q |
| |
|
| ||||| |||| ||| | ||||| |||||| |||||||| ||||| |||||||| ||||| |||||| |||| |||||||||||||||||||| | |
|
|
| T |
11758615 |
aagaagaccgttttttcaacaagaatcttgatttaattgatgtcaatgctagtgctttcttccacagtttttcctcaaatgagtggttgatccaacgagt |
11758714 |
T |
|
| Q |
236 |
agaaaca |
242 |
Q |
| |
|
||||||| |
|
|
| T |
11758715 |
agaaaca |
11758721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 725 - 798
Target Start/End: Complemental strand, 11736616 - 11736541
Alignment:
| Q |
725 |
aatgaaccaactaactattttgttttta--ccatgtcagatacgatacaggtctaatggaccacttgtacttcatg |
798 |
Q |
| |
|
|||||||||| ||| | |||||||||| | ||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
11736616 |
aatgaaccaaataatttgtttgtttttatacgatgtcagatacgatacaggcctactggaccacttgtacttcatg |
11736541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 751 - 796
Target Start/End: Original strand, 11666240 - 11666285
Alignment:
| Q |
751 |
taccatgtcagatacgatacaggtctaatggaccacttgtacttca |
796 |
Q |
| |
|
||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
11666240 |
taccatgctagatacgatacaggcctgatggaccacttgtacttca |
11666285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 12 - 671
Target Start/End: Original strand, 15167 - 15828
Alignment:
| Q |
12 |
aagcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggag |
111 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
15167 |
aagcagaaatactattttgccttagcaaaagaagtaatgcggataaatggtacaacaaaatcgtcattagctaatcatgtagctgaaacagttgcgggag |
15266 |
T |
|
| Q |
112 |
ctgcaacgattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctc |
211 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||| | ||||||| |
|
|
| T |
15267 |
ctgcaacaataagggcttttgaggatgaagatcgttcttttgagaagaacctttatctaattgatgttaatgctagttcttttttccatattattgcctc |
15366 |
T |
|
| Q |
212 |
gaatgagtggttgatccaacggttagaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttccccctggaacattcacctca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |
|
|
| T |
15367 |
aaatgagtggttgatccaacggttagaaataatcagtgcaattgttctcaccgctgcagcactttgcatggttatgctccctcctggaacattcacatcg |
15466 |
T |
|
| Q |
312 |
ggtgagaatttggttgttaatatctcgaagatatcgttgtctaagtattgtaattatactcaaatca--nnnnnnnatgctaaaacaatagcattatctt |
409 |
Q |
| |
|
|||||||||||| || || |||||| || || || |||| | | | || ||||||| ||||||||| || ||||||||| | | | ||| |
|
|
| T |
15467 |
ggtgagaatttgtctgatattatctctaaaatgtcattgtttgaattttataattattctcaaatcatgagtttctatcctaaaacaaaaacctcgtcta |
15566 |
T |
|
| Q |
410 |
tcttgatgcaagtttctaaatttcaacatctttcattccaggaattatcggcatggctctatcttatggcctttcattaaacaattccttagtattttca |
509 |
Q |
| |
|
||| |||| | |||| ||||||| ||||| |||||| ||||| |||| ||||||||||||||||||||||| ||| ||||| | ||||||||| ||| |
|
|
| T |
15567 |
tctggatgtatgtttataaattttaacattattcatttcaggatttattggcatggctctatcttatggcctatcactaaacgctgccttagtatactca |
15666 |
T |
|
| Q |
510 |
attcaaaatcaatgcactgttgcaaatcacataatatcagtagagaggctaaaacaatatatgcatatagaaagtgaggcggaagaaatagtagccgaaa |
609 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||||||||||||| | |||| |
|
|
| T |
15667 |
attcaacatcaatgcactcttgcaaattacataatatcagtggagagactaaatcaatatatgcatataaaaagtgaagcggaagaaatagttgaagaaa |
15766 |
T |
|
| Q |
610 |
atcgtcctccttcaaattggccagttgccggcaaagtagaaatcaataacttgaaggtaatt |
671 |
Q |
| |
|
| |||||||||| |||||||||||||| |||||||||||||| ||| | |||||||||||| |
|
|
| T |
15767 |
accgtcctcctttgaattggccagttgcaggcaaagtagaaataaatgatttgaaggtaatt |
15828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 747 - 798
Target Start/End: Original strand, 15903 - 15954
Alignment:
| Q |
747 |
tttttaccatgtcagatacgatacaggtctaatggaccacttgtacttcatg |
798 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
15903 |
tttttaccatgtcagatacgatacaggcctgaaggaccacttgtacttcatg |
15954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 6262 - 5949
Alignment:
| Q |
12 |
aagcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggag |
111 |
Q |
| |
|
||||||||||||||| |||||| | ||||||| ||||| ||||||||||||| ||||| || |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
6262 |
aagcagagatactacattgcctctgaaaaagaagtaatgaggatgaatggcaccacaaagtcgtcattagctaatcatgtaaatgaaactgttgctggag |
6163 |
T |
|
| Q |
112 |
ctgcaacgattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctc |
211 |
Q |
| |
|
||||||| || ||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||| ||||| ||||||||||||||||||||| |||| |
|
|
| T |
6162 |
ctgcaactataagggcttttgaggaggaagattgtttttttgagaaaaaccttgacctaattgatataaatgctagtgcttttttccatagtttttcctc |
6063 |
T |
|
| Q |
212 |
gaatgagtggttgatccaacggttagaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttccccctggaacattcacctca |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
6062 |
aaaagagtggttgatccaacggttagaaataatcagtgcagttgttcttaccactggagcactttgcatggttatgctccctcctggaacattcacctca |
5963 |
T |
|
| Q |
312 |
ggtgagaatttggt |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5962 |
ggtgagaatttggt |
5949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 448 - 672
Target Start/End: Complemental strand, 5889 - 5665
Alignment:
| Q |
448 |
caggaattatcggcatggctctatcttatggcctttcattaaacaattccttagtattttcaattcaaaatcaatgcactgttgcaaatcacataatatc |
547 |
Q |
| |
|
|||||||||| ||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
5889 |
caggaattattggcatggctttatcctacggcctttcactaaacaattccttagtattttcaattcaaaatcaatgcactcttgcgaatcacataatatc |
5790 |
T |
|
| Q |
548 |
agtagagaggctaaaacaatatatgcatatagaaagtgaggcggaagaaatagtagccgaaaatcgtcctccttcaaattggccagttgccggcaaagta |
647 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |||| ||||| | |||| |||| | |||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
5789 |
agtagagagattaaatcaatatatgcatatacaaagcgaggccaaggaaactgtagaaggtaatcgtcctcctctgaattggccagttgcaggcaaagta |
5690 |
T |
|
| Q |
648 |
gaaatcaataacttgaaggtaattg |
672 |
Q |
| |
|
|||| || |||| |||||||||| |
|
|
| T |
5689 |
aaaataaacgacttaaaggtaattg |
5665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 743 - 794
Target Start/End: Complemental strand, 5596 - 5545
Alignment:
| Q |
743 |
tttgtttttaccatgtcagatacgatacaggtctaatggaccacttgtactt |
794 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| || | ||||||||||||||| |
|
|
| T |
5596 |
tttgtttataccatgccagatacgatacaggcctgacggaccacttgtactt |
5545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 3e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 16391224 - 16390910
Alignment:
| Q |
12 |
aagcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggag |
111 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||||||| | ||||||||||||||| | |||| ||||||||||||||||||||| | |||| |
|
|
| T |
16391224 |
aagcagagatactactttgcctcagcaaaagaagtgatgcggataactggcacaacaaaatcctatgtagcaaatcatgtagctgaaactgtttctggag |
16391125 |
T |
|
| Q |
112 |
ctgcaacgattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctc |
211 |
Q |
| |
|
| | || || || ||||||||||||||||||||| ||| ||||||| |||||||||||||| | |||||| ||| | ||||| |||| ||||||||| |
|
|
| T |
16391124 |
cagtgacaataagaacttttgaggaggaagatcgtttctttcagaagaatcttgatctaattgacattaatgctagttcattttttcataattttgcctc |
16391025 |
T |
|
| Q |
212 |
gaatgagtggttgatccaacggttagaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttccccctggaacattcacctca |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||| |||||| || |||||||||||||||||||||| ||||| || || || |||||||| |
|
|
| T |
16391024 |
aaacgagtggttgatccaacggttagaaacaataagtgcaggtgttcttgcctctgcagcactttgcatggttatacttccaccagggactttcacctct |
16390925 |
T |
|
| Q |
312 |
ggtgagaatttggtt |
326 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16390924 |
ggtgagaatttggtt |
16390910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 443 - 676
Target Start/End: Complemental strand, 16390839 - 16390606
Alignment:
| Q |
443 |
cattccaggaattatcggcatggctctatcttatggcctttcattaaacaattccttagtattttcaattcaaaatcaatgcactgttgcaaatcacata |
542 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||| ||| || |||| || |||||| ||||||||||| ||| |||||| |||||||||| ||| |
|
|
| T |
16390839 |
cattccaggttttattggcatggctctatcttatggtcttgcactaaattctttcttagtgaattcaattcaaagtcagtgcactcttgcaaatcaaata |
16390740 |
T |
|
| Q |
543 |
atatcagtagagaggctaaaacaatatatgcatatagaaagtgaggcggaagaaatagtagccgaaaatcgtcctccttcaaattggccagttgccggca |
642 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||| |||| | |||||| ||||||| ||||||||| |||| |||| |
|
|
| T |
16390739 |
atatcagtcgagaggctaaatcaatatatgcatatacaaagtgaggccaaagaaatcgtagaaggaaatcgccctcctttgaattggccaattgcaggca |
16390640 |
T |
|
| Q |
643 |
aagtagaaatcaataacttgaaggtaattgttac |
676 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |
|
|
| T |
16390639 |
aagtagaaataaatgacttgaaggtaattgttac |
16390606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 747 - 798
Target Start/End: Complemental strand, 16390537 - 16390486
Alignment:
| Q |
747 |
tttttaccatgtcagatacgatacaggtctaatggaccacttgtacttcatg |
798 |
Q |
| |
|
||||||| |||| |||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
16390537 |
tttttactatgttagatacgatacaggcctgacggaccacttgtacttcatg |
16390486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 44813941 - 44814244
Alignment:
| Q |
14 |
gcagagatactactttgccttggcaaaagaactaatgcggatgaatggcacaacaaaatcatcattagctaatcatgtagctgaaactgttgccggagct |
113 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||| ||| | |||||| ||||||| || || |
|
|
| T |
44813941 |
gcagggatactactttgctactgcaaaagaactgatgcggatgaatggcacaacaaaatcctttgtagctaaccatcttgctgaatctgttgctggtgcc |
44814040 |
T |
|
| Q |
114 |
gcaacgattagggcttttgaggaggaagatcgttcttttgagaagaaccttgatctaattgataataatgcaagtgcttttttccatagttttgcctcga |
213 |
Q |
| |
|
| || || ||||||||||| |||||| ||||| ||||| ||||| |||| | ||||||||| ||||| | | |||| || |||||||||||| | | |
|
|
| T |
44814041 |
gtgacaataagggcttttgaacaggaaggtcgtttttttgtaaagaatcttggtttaattgatatcaatgctactcctttctttcatagttttgccgcta |
44814140 |
T |
|
| Q |
214 |
atgagtggttgatccaacggttagaaacaatcagtgcagttgttctcaccgctgcagcactttgcatggttatgcttccccctggaacattcacctcagg |
313 |
Q |
| |
|
||||||||||||| ||||||||||||||| | |||||||||||||| | | || ||||||||||||||||| ||||| |||||||||||| |||| || |
|
|
| T |
44814141 |
atgagtggttgattcaacggttagaaacagttagtgcagttgttcttgcatcagctgcactttgcatggttatacttccacctggaacattctcctctgg |
44814240 |
T |
|
| Q |
314 |
tgag |
317 |
Q |
| |
|
|||| |
|
|
| T |
44814241 |
tgag |
44814244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 448 - 589
Target Start/End: Original strand, 44814340 - 44814481
Alignment:
| Q |
448 |
caggaattatcggcatggctctatcttatggcctttcattaaacaattccttagtattttcaattcaaaatcaatgcactgttgcaaatcacataatatc |
547 |
Q |
| |
|
||||| |||| || |||||||| || ||||| |||||| | ||| |||||| ||||||||||||||||||||||||| | | |||||| | |||||||| |
|
|
| T |
44814340 |
caggatttattggaatggctctctcatatggtctttcacttaacgcttccttggtattttcaattcaaaatcaatgcaatatagcaaattatataatatc |
44814439 |
T |
|
| Q |
548 |
agtagagaggctaaaacaatatatgcatatagaaagtgaggc |
589 |
Q |
| |
|
||| ||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
44814440 |
agtggagaggctaaatcaatatatgcatgtaccaagtgaggc |
44814481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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