View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8752_low_11 (Length: 356)

Name: NF8752_low_11
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8752_low_11
NF8752_low_11
[»] chr5 (1 HSPs)
chr5 (1-346)||(39184810-39185157)
[»] chr1 (3 HSPs)
chr1 (9-80)||(42373538-42373609)
chr1 (20-84)||(19597952-19598016)
chr1 (14-82)||(41919898-41919966)
[»] chr2 (1 HSPs)
chr2 (14-89)||(31902961-31903036)
[»] chr8 (4 HSPs)
chr8 (20-82)||(34866640-34866702)
chr8 (14-87)||(9519052-9519125)
chr8 (14-74)||(10551752-10551812)
chr8 (14-82)||(34389590-34389658)
[»] chr7 (3 HSPs)
chr7 (20-82)||(38484991-38485053)
chr7 (20-89)||(3420242-3420311)
chr7 (14-82)||(38305676-38305744)
[»] chr4 (2 HSPs)
chr4 (20-88)||(16501182-16501250)
chr4 (14-82)||(30963879-30963947)
[»] chr6 (1 HSPs)
chr6 (40-82)||(12793553-12793595)
[»] chr3 (1 HSPs)
chr3 (14-84)||(17501810-17501880)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 39184810 - 39185157
Alignment:
Q  1 caacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcag 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39184810 caacacaaaacatatatataggaagacgaaacacaactacaaaacataggcaacgacgccagtttgaagcagaatcacaacctaaatcagagaaatgcag 39184909  T
Q  101 ctgccggtgacatggagaaaacgtatgtcgccggagtaaacaaccaaccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  39184910 ctgccggtgacatggagaaaacatatgtcgccggagtaaacaaccaaccccatgaacctgcggaactgaccgaatggaagctgatctcagcaacaaaatc 39185009  T
Q  201 accaaaaccagtaccaaacctgaaagcatgtgagacacccagagnnnnnnngtcgatatatacccaaaaccgc---caaaaaaccaagcaaccagcacca 297  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||       ||||||||||||| |||||| |    |||||||||||||||||||||||    
T  39185010 accaaaaccagtaccgaacgtgaaagcacgtgagacacccagag-aaaaaagtcgatatatacctaaaaccacaaaaaaaaaaccaagcaaccagcacca 39185108  T
Q  298 ctacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaac 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39185109 ctacccaccgtgtatggccgtcggaaagctggtgacaacaccaccaaac 39185157  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 42373609 - 42373538
Alignment:
Q  9 aacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaa 80  Q
    |||| ||| ||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||    
T  42373609 aacagatcgataggaagacgaaacacaacttcaaaacacgggcaacgacaccggtttgaagcggaatcacaa 42373538  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 19598016 - 19597952
Alignment:
Q  20 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaaccta 84  Q
    ||||||| ||||| |||| ||| |||| ||||||||||||| || ||||| |||| |||||||||    
T  19598016 aggaagatgaaacccaacaacagaacacgggcaacgacgccggtctgaagtggaaacacaaccta 19597952  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  14 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 82  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 31902961 - 31903036
Alignment:
Q  14 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 89  Q
    ||||| ||||||||||||| |||| |||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||    
T  31902961 atctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccggtttgaagcggaaacacaacctagatca 31903036  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  20 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 82  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 9519125 - 9519052
Alignment:
Q  14 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 87  Q
    ||||| || |||||||||| |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519125 atctagagaaagacgaaacccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 10551812 - 10551752
Alignment:
Q  14 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 74  Q
    ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551812 atctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  14 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 82  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  20 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 82  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  20 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 89  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  14 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 82  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 16501250 - 16501182
Alignment:
Q  20 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatc 88  Q
    |||||||| |||  |||| ||| |||||||||| ||||||| |||||||| |||||||||||| |||||    
T  16501250 aggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaagtggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  14 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 82  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 12793595 - 12793553
Alignment:
Q  40 caaaacatgggcaacgacgccagtttgaagcggaatcacaacc 82  Q
    ||||||| |||||||||||||||||||||||| || |||||||    
T  12793595 caaaacacgggcaacgacgccagtttgaagcgaaaacacaacc 12793553  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 17501810 - 17501880
Alignment:
Q  14 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaaccta 84  Q
    ||||| ||||||||||||   ||| |||||||| || ||| |||| ||||||||||||||| |||||||||    
T  17501810 atctagaggaagacgaaatctaacaacaaaacacggacaatgacgtcagtttgaagcggaaacacaaccta 17501880  T

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