View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8752_low_14 (Length: 330)
Name: NF8752_low_14
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2369317 - 2369549
Alignment:
| Q |
1 |
tttgtctattttcaaactatgtaataatcctttcagatccatgttgtgttagttgtggaataatttgtgatattttggtgtacttcatttggttcaattt |
100 |
Q |
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| T |
2369317 |
tttgtctattttcaaactatgtaat---cctttcagatccatgttgtgttagttgtggaataatttgtgatattttggtgtacttcatttggttcaattt |
2369413 |
T |
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| Q |
101 |
catgaaggttgaaaagattatggcgattaatttattcaaaaaattatttctgcattgtcatttattgatatgtaatatactttggattaatgtgaaagtt |
200 |
Q |
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| T |
2369414 |
catgaaggttgaaaagattatggcgattaatttattcaaaaaattatttctgcattgtcatttatcaatatgtaatatactttggattaatgtgaaagtt |
2369513 |
T |
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| Q |
201 |
gttcatccatattcatttacacatttgttttcgtta |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2369514 |
gttcatccatattcatttacacatttgttttcgtta |
2369549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 2363646 - 2363684
Alignment:
| Q |
165 |
ttgatatgtaatatactttggattaatgtgaaagttgtt |
203 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
2363646 |
ttgatatgtaatataatttggattaatgtgaaagttgtt |
2363684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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