View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8752_low_15 (Length: 317)

Name: NF8752_low_15
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8752_low_15
NF8752_low_15
[»] chr3 (1 HSPs)
chr3 (12-317)||(34685343-34685658)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 317
Target Start/End: Original strand, 34685343 - 34685658
Alignment:
Q  12 ataatactcctctttaattatactcatatttttctctt--aggnnnnnnnntactcatgttttttattcatttatttcagtccactattccccaatggag 109  Q
    |||| ||||||||||||||||||||||||||||||||   ||         |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34685343 ataacactcctctttaattatactcatatttttctctctcagaaaaaaaaatactcatgttttttattcatttatttcagtccactattccccaatggag 34685442  T
Q  110 ttgccatagttcaactaaacttattcaacttatgatggttccggtcatatttaaattgggacactctcaatcaattcaaatttaactaaaattcagcaat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34685443 ttgccatagttcaactaaacttattcaacttatgatggttccggtcatatttaaattgggacactctcaatcaattcaactttaactaaaattcagcaat 34685542  T
Q  210 aatttgaattctaaaatgtgattccatacatcttatacatct--------atgaccaaaattgtgttgcagccgttcacttctcaacacacacacaacta 301  Q
    || ||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34685543 aacttgaattctaacatgtgattccatacatcttatacatctacacatgaatgaccaaaattgtgttgcaaccgttcacttctcaacacacacacaacta 34685642  T
Q  302 tattattaccagcagc 317  Q
    ||||||||||||||||    
T  34685643 tattattaccagcagc 34685658  T

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