View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8752_low_16 (Length: 269)
Name: NF8752_low_16
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 4897053 - 4896806
Alignment:
| Q |
1 |
aagtgagagataaacctcaaccaggcagtggaaggctactgcnnnnnnnnnn--gttctttttcttaatatatagccactctgattttggtaggatatgt |
98 |
Q |
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| T |
4897053 |
aagtgagaaataaacctcaaccaggcagtagaaggctactgcttttttttttttgttctttt-cttaatatatagccactctgattttggtaggatatga |
4896955 |
T |
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| Q |
99 |
gaagttttgttgagatggtgatgttagagagatgaaaagaaatggtgtgttagtggtttttagaactttgggtggatcaaagagcatatatatttttaaa |
198 |
Q |
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| T |
4896954 |
gaagttttgttcagatggtgatgttagagacgtgaaaagaaatggtatgttagtggtttttagaactttgggtggatcataaagcaaatatatttttaaa |
4896855 |
T |
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| Q |
199 |
actgatacaaaagatgaccnnnnnnncaacaaattattcactgtttgga |
247 |
Q |
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| T |
4896854 |
acaaatacaaaggatgaccaaaaaatcaacaaattattcactgtttgga |
4896806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 4902823 - 4902698
Alignment:
| Q |
54 |
ttctttttcttaatatatagccactctgattttggtaggatatgtgaag-ttttgttgagatggtgatgttagagagatgaaaagaaatggtgtgttagt |
152 |
Q |
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| T |
4902823 |
ttctttttcttagtatatagccattctgtttttggtagtaaatgagaaggttttcatgagatggtgatgttgaag-gtggaaaataa--ggtgtgttagt |
4902727 |
T |
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| Q |
153 |
ggtttttagaactttgggtggatcaaaga |
181 |
Q |
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| T |
4902726 |
gatttttagaactttgggaggatcaaaga |
4902698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 4929958 - 4929887
Alignment:
| Q |
129 |
gatgaaaagaaatggtgtgttagtggtttttagaactttgggtggatcaaagagcatatatatttttaaaac |
200 |
Q |
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| T |
4929958 |
gatgaaaataaaaggactgttagtgatttttagaatattgggtggatcaaagagcctatatatttttaaaac |
4929887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 4938292 - 4938201
Alignment:
| Q |
108 |
ttgagatggtgatgttagagagatgaaaagaaatggtgtgttagtggtttttagaactttgggtggatcaaagagcatatatatttttaaaact |
201 |
Q |
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| T |
4938292 |
ttgagatggtgatgttag-gag-tgaaaagaaaagggttgttggtgatttttagatagttgggtggatcaaagagccactatatttctaaaact |
4938201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 4949904 - 4949824
Alignment:
| Q |
129 |
gatgaaaagaaatggtgtgttagtggtttttagaactttgggtggatcaaagagcatatatatttttaaaactgatacaaa |
209 |
Q |
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|||||||||||| || || |||||| |||| |||| ||||||||||||| ||| ||||||||||||||| ||| |||| |
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| T |
4949904 |
gatgaaaagaaaaggagtattagtgattttcagaatattgggtggatcaaggaggcaatatatttttaaaaccgatccaaa |
4949824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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