View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8752_low_2 (Length: 781)
Name: NF8752_low_2
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 325 - 765
Target Start/End: Complemental strand, 15760584 - 15760144
Alignment:
| Q |
325 |
tagcgttctatctgaatagttacatgactaatgttatgaaccctcctgatgtagtctacgaccttgtcaagcatcacatcagcgtctgcttcaggaatga |
424 |
Q |
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| T |
15760584 |
tagcgttctatctgaatagttacatgactaatgttatgaaccctcctgatgtagtctacgaccttgtcaagcatcacatcagcgtctgcttcaggaatga |
15760485 |
T |
|
| Q |
425 |
ctttaacatgacaagctagtaataccttccctactgtaatggcccatatgtgcagctcatgaacagccactacttcttccatctccaatagccccttttg |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15760484 |
ctttaacatgacaagctagtaataccttccctactgtaatggcccatatgtgcagctcatgaacagccactacttcttccatctccaatagccccttttg |
15760385 |
T |
|
| Q |
525 |
aagctgagtagcatctatctcgcgtggtgtgctttccatcaagacttccagaatgtttctcagcatgttgatagttgtggccaagacaattacagaaaag |
624 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15760384 |
aagctgagtagcatctatctcgcgtggtgtgctttccatcaagacttccaggatgtttctcagcatgttgatagttgtggccaagacaattacagaaaag |
15760285 |
T |
|
| Q |
625 |
attagagtgcaaatcaaatcgactattttccattcaggtttataccatatgattgctcccccaatcattacaccaatactctggatagagtctccaagta |
724 |
Q |
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| T |
15760284 |
attagagtgcaaatcaaatcgactattttccattcaggtttataccatatgattgctcccccaatcattacaccaatactctggatagagtctccaagta |
15760185 |
T |
|
| Q |
725 |
catggagatatgccccatgtacatttatgttccgtttcttc |
765 |
Q |
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| T |
15760184 |
catggagatatgccccatgtacatttatgttccgtttcttc |
15760144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 15760885 - 15760643
Alignment:
| Q |
19 |
gctttgccgtgtcctcttgtctcagacgcaagaacaaaaaggatcgcgaacttcaactcccaaaattggacttgttggttacatattagatttccttgag |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15760885 |
gctttgctgtgtcctcttgtctcagacgcaagaacaaaaaggatcgcgaacttcaactcccaaaattggacttgttggttacatatt-----tccttgag |
15760791 |
T |
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| Q |
119 |
ttcaaacttccccatgttcgcaataatatcccagacataaaaatttggcatgaatatagacaatgctcatatcaacactcttaaacttctagaaacaagt |
218 |
Q |
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| T |
15760790 |
ttcaaacttccccatgttcgcaataatatcccagacataaaaatttggcatgaatataaacaatgctcatatcaacactcttaaacttctagaaacaagt |
15760691 |
T |
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| Q |
219 |
agtgtacagaatatttattgtcatagagaaagttgaaatccatagtct |
266 |
Q |
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| T |
15760690 |
agtgtacagaatatttattgtcatagagaaagttgaaatccatagtct |
15760643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 450 - 757
Target Start/End: Original strand, 8886175 - 8886482
Alignment:
| Q |
450 |
cttccctactgtaatggcccatatgtgcagctcatgaacagccactacttcttccatctccaatagccccttttgaagctgagtagcatctatctcgcgt |
549 |
Q |
| |
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|||||| ||||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||| ||| ||||| ||||||||| |||||||| |
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| T |
8886175 |
cttcccaactgtgatagcccaaatgtggagctcatgaacagccactacttcctccatctccaatatccccctttcaagcttagtagcatcaatctcgcga |
8886274 |
T |
|
| Q |
550 |
ggtgtgctttccatcaagacttccagaatgtttctcagcatgttgatagttgtggccaagacaattacagaaaagattagagtgcaaatcaaatcgacta |
649 |
Q |
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|| || || ||||||| ||||||| |||||||| |||||| ||||||||||| |||| |||||| | ||||||| |||||||||||| ||||| |||| |
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| T |
8886275 |
ggcgtactctccatcagaacttccaaaatgtttcgcagcatattgatagttgttcccaaaacaattgccgaaaagaatagagtgcaaattaaatcaacta |
8886374 |
T |
|
| Q |
650 |
ttttccattcaggtttataccatatgattgctcccccaatcattacaccaatactctggatagagtctccaagtacatggagatatgccccatgtacatt |
749 |
Q |
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|||||||||| |||||||||||||| | |||||| || |||||||| |||||||| ||||||||||| || |||||||||||||| ||||| || ||||| |
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| T |
8886375 |
ttttccattctggtttataccatataactgctcctccgatcattactccaatactttggatagagtcgccgagtacatggagataagccccttgcacatt |
8886474 |
T |
|
| Q |
750 |
tatgttcc |
757 |
Q |
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|||||||| |
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| T |
8886475 |
tatgttcc |
8886482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 8886050 - 8886105
Alignment:
| Q |
325 |
tagcgttctatctgaatagttacatgactaatgttatgaaccctcctgatgtagtc |
380 |
Q |
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||||| |||||||||||||||||||| |||||||||| ||| || |||||||||| |
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| T |
8886050 |
tagcgctctatctgaatagttacatggctaatgttataaactcttttgatgtagtc |
8886105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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