View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8752_low_20 (Length: 248)
Name: NF8752_low_20
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_low_20 |
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| [»] scaffold1439 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 40580083 - 40580313
Alignment:
| Q |
1 |
atttattcagggaaccagaatttgatggaatcatttacaaaaataaatttgaaacctatatgaactaatttaacaacaaatattcgtttctaagaactga |
100 |
Q |
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| T |
40580083 |
atttattcagggagccagaatt-gatgggatcattcacaaaaataaatttgaaacctatgtgaactaatttaacaacaaatattcgtttctaagaactga |
40580181 |
T |
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| Q |
101 |
tttgaaatataactgggtctatatggctggcttcacttacaatgtca-tagactattttaaggatgatgaatggaacaaaagtttttggggtttgattga |
199 |
Q |
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| T |
40580182 |
tttgaaatataactgggtctatatggctggcttcacttacaatgtcattagactattttaaggatgatgtatggaacaaaagtttttggggtgatattga |
40580281 |
T |
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| Q |
200 |
atatgctatgagtgatgataaaaatggtagta |
231 |
Q |
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| T |
40580282 |
atatgctatgagtgataataaaaatggtagta |
40580313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 40580336 - 40580373
Alignment:
| Q |
194 |
gattgaatatgctatgagtgatgataaaaatggtagta |
231 |
Q |
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| T |
40580336 |
gattgaatatgctatgagtgataataaaaatggtagta |
40580373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 2305627 - 2305566
Alignment:
| Q |
170 |
atggaacaaaagtttttggggtttgattgaatatgctatgagtgatgataaaaatggtagta |
231 |
Q |
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| T |
2305627 |
atggaacacaagtttttgggatgagattgaatatgctatgagtgatcataaaaatggtagta |
2305566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 34975698 - 34975767
Alignment:
| Q |
162 |
gatgatgaatggaacaaaagtttttggggtttgattgaatatgctatgagtgatgataaaaatggtagta |
231 |
Q |
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| T |
34975698 |
gatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagta |
34975767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 34980478 - 34980547
Alignment:
| Q |
162 |
gatgatgaatggaacaaaagtttttggggtttgattgaatatgctatgagtgatgataaaaatggtagta |
231 |
Q |
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| T |
34980478 |
gatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagta |
34980547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 34989533 - 34989602
Alignment:
| Q |
162 |
gatgatgaatggaacaaaagtttttggggtttgattgaatatgctatgagtgatgataaaaatggtagta |
231 |
Q |
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| T |
34989533 |
gatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagta |
34989602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 1787 - 1718
Alignment:
| Q |
162 |
gatgatgaatggaacaaaagtttttggggtttgattgaatatgctatgagtgatgataaaaatggtagta |
231 |
Q |
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| T |
1787 |
gatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagta |
1718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 22657216 - 22657147
Alignment:
| Q |
162 |
gatgatgaatggaacaaaagtttttggggtttgattgaatatgctatgagtgatgataaaaatggtagta |
231 |
Q |
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| T |
22657216 |
gatgatgtatggaacaaaagtttttgggatgagattgaatatgctgttggtgatcataaaaatgggagta |
22657147 |
T |
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