View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8752_low_23 (Length: 240)
Name: NF8752_low_23
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 2369638 - 2369848
Alignment:
| Q |
20 |
taaattttgcaaaa--aagatttatataatatattatacacgactataaattattcgagtaggtcattcgattagtataattgtcaattgaatttccgga |
117 |
Q |
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| T |
2369638 |
taaattttgcaaaaaaaagatttatataatatattatacacgactataaattattcgagtaggtcattcgattagtataattgtcaattgaatttccgga |
2369737 |
T |
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| Q |
118 |
ccaaaattgataaacttcacacaccattgaccctcgactttggtgattttgttttatggtacttagttatagaagatgaatgattaag-----ggattgg |
212 |
Q |
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| T |
2369738 |
ccaaaattgataaactttacacaccattgaccctccactttggtgattttgttttatggtacttagttatagaagatgaatgattaaggttatggattgg |
2369837 |
T |
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| Q |
213 |
atgctaaagat |
223 |
Q |
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||||||||||| |
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| T |
2369838 |
atgctaaagat |
2369848 |
T |
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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 49804692 - 49804624
Alignment:
| Q |
81 |
tcattcgattagtataattgtcaattgaatttccggaccaaaattgataaacttcacacaccattgacc |
149 |
Q |
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| T |
49804692 |
tcattcaattaatataattgtcaattgaattttccgaccaaaattgataaacttcacacaccattgacc |
49804624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 49804582 - 49804511
Alignment:
| Q |
157 |
ttggtgattttgttttatggtacttagttatagaagatgaatgattaag-----ggattggatgctaaagat |
223 |
Q |
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| T |
49804582 |
ttggtgattttgttttatggtacttagttatagaagatgagtgattaaggtgatggattggatgctaaagat |
49804511 |
T |
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