View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8752_low_3 (Length: 742)

Name: NF8752_low_3
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8752_low_3
NF8752_low_3
[»] chr8 (3 HSPs)
chr8 (1-727)||(26274725-26275450)
chr8 (275-357)||(26250930-26251015)
chr8 (562-630)||(26250817-26250885)


Alignment Details
Target: chr8 (Bit Score: 679; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 1 - 727
Target Start/End: Original strand, 26274725 - 26275450
Alignment:
Q  1 attatttactctaaacagtaccatcaaactcgacatgcaccctataagtatccacgacagaacaaaataactactttattttatcaaatgatttcgtttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26274725 attatttactctaaacagtaccatcaaactcgacatgcaccctataagtatccacgacagaacaaaataactactttattttatcaaatgatttcgtttc 26274824  T
Q  101 atccatttgggattttaggattgttattatccgattgctattctccaaacgatcggtgccctgattgacaccatagacaagaaccacacctctgggtcga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26274825 atccatttgggattttaggattgttattatccgattgctattctccaaacgatcggtgccctgattgacaccatagacaagaaccacacctctgggtcga 26274924  T
Q  201 ctgcttggagtgctttgtggtcttctccacgtagctcttatttccaactacttctgtactggtacattatcagtaaaattacatatcataaattccacat 300  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26274925 ctgcttggagtgctttgttgtcttctccgcgtagctcttatttccaactacttctgtactggtacattatcagtaaaattacatatcataaattccacat 26275024  T
Q  301 taagcaataaggaacaattatttcttttgacatctcatctatttttagaatgagtttacttagttgttgtacaagtacctaaagaaataaagacatgcat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  26275025 taagcaataaggaacaattatttcttttgacatctcatctatttttagaatgagtttgcttagttgttgtacaagtacctaaagaaataaagacatacat 26275124  T
Q  401 atatataaatctagcatgacgcaacagctgtctgagtgagaagaaacaagtgggaaaataaatataaagaactcagccaagtggcagctgagtaataaac 500  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26275125 atatataaatctagcatgacacaacagctgtctgagagagaagaaacaagt-ggaaaataaatataaagaactcagccaagtggcagctgagtaataaac 26275223  T
Q  501 aaaaggttgtttaaggttacttgtgactgacaaattgtcgaggatgtgaatatgaagcccaaactgaagatgggaaaggtgagaacagtggcattgcagt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  26275224 aaaaggttgtttaaggttacttgtgactgacaaattgtcgaggatgtgaatatgaagatcaaactgaagatgggaaaggtgagaacagtggcattgcagt 26275323  T
Q  601 tggtaaaaactaactaacatgaaatcttacaccaggtagaaaatgtcgaccatattgcttgtatgtgaagtttcatttggcctgctattatgttgcgggt 700  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26275324 tggtaaaaactacctaacatgaaatattacaccaggtagaaaatgtcgaccatattgcttgtatgtgaagtttcatttggcctgctattatgttgcgggt 26275423  T
Q  701 ttatgacatgtattttggcactgatgt 727  Q
    |||||||||||||||||||||||||||    
T  26275424 ttatgacatgtattttggcactgatgt 26275450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 26251015 - 26250930
Alignment:
Q  275 aaaattaca-tatcataaattccacattaagcaataaggaac--aattatttcttttgacatctcatctatttttagaatgagttt 357  Q
    ||||||||| ||||||||||||||| ||||||  ||||||||  | ||||||||||||||||||||| ||||||||||||||||||    
T  26251015 aaaattacaatatcataaattccaccttaagctctaaggaactcagttatttcttttgacatctcatgtatttttagaatgagttt 26250930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 562 - 630
Target Start/End: Complemental strand, 26250885 - 26250817
Alignment:
Q  562 aactgaagatgggaaaggtgagaacagtggcattgcagttggtaaaaactaactaacatgaaatcttac 630  Q
    ||||||||||||||||||||||||   ||| ||||||| ||||| |||||| |||||||||||||||||    
T  26250885 aactgaagatgggaaaggtgagaaagttggtattgcaggtggtagaaactacctaacatgaaatcttac 26250817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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