View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8752_low_6 (Length: 527)
Name: NF8752_low_6
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 97 - 513
Target Start/End: Complemental strand, 32557798 - 32557382
Alignment:
| Q |
97 |
ccataagaaatgtgtactgaaggataggtaaaaaaggggacaaggatgtgggttgtctggaaattgggtccaaaccaagattaagggtgtatgagaggag |
196 |
Q |
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| T |
32557798 |
ccataagaaatgtgtactgaaggataggtaaaaaaggggacaaggatgtgggttgtctgggaattgggtccaaaccaagattaagggtgtatgagaggag |
32557699 |
T |
|
| Q |
197 |
aagggaataggtggcaagcaaggagtgagagagtaggaaagagatgtgggaatcctgaatgcagtggggggagaatgagtatttattcgggtatagtatt |
296 |
Q |
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| T |
32557698 |
aagggaataggtggcaagcaaggagtgagagagtaggaaagagatgtgggaatcctgaatgcagtggggggagaatgagtatttattcgggtatagtatt |
32557599 |
T |
|
| Q |
297 |
agttctctttcaagattgggtttatccttttctgttttgttattgatcatcttgccaagggtattgcgttaccattttaattatttctggcttgcagtat |
396 |
Q |
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| T |
32557598 |
agttctctttcaagattgggtttatccttttctgttttgttattgatcatcttgccaggggtattgcgttaccattttaattatttctggcttgcagtat |
32557499 |
T |
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| Q |
397 |
tatcttgtaaagaggaaccagcctctgttaagagagttgtcaatacannnnnnnnnnnnnnnnatcatgtttgtagcatgcttacaacccagatgaggag |
496 |
Q |
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| T |
32557498 |
tatcttgtaaaaaggaaccagcctctgttaagagagttgtcaatacatttttctttgttttttatcatgtttgtagcatgcttacaacccagatgaggag |
32557399 |
T |
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| Q |
497 |
tatgctgaggtggaatc |
513 |
Q |
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| T |
32557398 |
tatgctgaggtggaatc |
32557382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 32557838 - 32557796
Alignment:
| Q |
18 |
aaaagaaccttcaagtatgtattgaatcccatcttcccatcca |
60 |
Q |
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| T |
32557838 |
aaaagaaccttcaagtatgtattgaatcccatcttcccatcca |
32557796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 17845025 - 17845073
Alignment:
| Q |
466 |
tttgtagcatgcttacaacccagatgaggagtatgctgaggtggaatct |
514 |
Q |
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| T |
17845025 |
tttgtagcatgcttataatccagatgaggagtacactgaggtggaatct |
17845073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 20412284 - 20412332
Alignment:
| Q |
466 |
tttgtagcatgcttacaacccagatgaggagtatgctgaggtggaatct |
514 |
Q |
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| T |
20412284 |
tttgtagcatgcttataatccagatgaggagtacacagaggtggaatct |
20412332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 5309396 - 5309444
Alignment:
| Q |
466 |
tttgtagcatgcttacaacccagatgaggagtatgctgaggtggaatct |
514 |
Q |
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||||||||||||||| || |||||||||||||| | |||||||||||| |
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| T |
5309396 |
tttgtagcatgcttataatccagatgaggagtacacagaggtggaatct |
5309444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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