View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8752_low_8 (Length: 433)
Name: NF8752_low_8
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_low_8 |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 19975369 - 19975097
Alignment:
| Q |
1 |
gaaaagtctcagactatgtttcatatgacttgacataacatctctgatgagctagttagacaacaatcaccattacatggcatgaccttagtgcatactg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
19975369 |
gaaaagtctcagactacgtttcatatgacttgacataacgtctctgatgagctagttaggcaacaatcaccattacatggcatgaccttagtgcatacta |
19975270 |
T |
|
| Q |
101 |
cccatggtgttcagtcggttctcactttggctacaaactttgtgctagatattcagaatactactactggtcctgatgacccgatggatacagttctaca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19975269 |
cccatggtgttcagccggttctcacttttgctagaaactttgtgctagatattcagaatactactactggtcctgatgacccgatggatacagttctaca |
19975170 |
T |
|
| Q |
201 |
gaaggaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactccctattga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19975169 |
gaaggaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactccctattga |
19975097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 21017464 - 21017736
Alignment:
| Q |
1 |
gaaaagtctcagactatgtttcatatgacttgacataacatctctgatgagctagttagacaacaatcaccattacatggcatgaccttagtgcatactg |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21017464 |
gaaaagtctcagactacgtttcatatgacttgacataacgtctctgatgagctagttaggcaacaatcaccattacatggcatgaccttagtgcatacta |
21017563 |
T |
|
| Q |
101 |
cccatggtgttcagtcggttctcactttggctacaaactttgtgctagatattcagaatactactactggtcctgatgacccgatggatacagttctaca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21017564 |
cccatggtgttcagccggttctcacttttgctagaaactttgtgctagatattcagaatactactactggtcctgatgacccgatggatacagttctaca |
21017663 |
T |
|
| Q |
201 |
gaaggaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactccctattga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21017664 |
gaaggaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactccctattga |
21017736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 19974857 - 19974589
Alignment:
| Q |
7 |
tctcagactatgtttcatatgacttgacataacatctctgatgagctagttagacaacaatcaccattacatggcatgac--cttagtgcatactgccca |
104 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||| ||||||||| ||||||||| ||||||||| || | |||||||||||||||||| |
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|
| T |
19974857 |
tctcagactacatttcatatgtttttacataacatctctgatgtgctagttaggcaacaatcatcattacatgacacaaaaacttagtgcatactgccca |
19974758 |
T |
|
| Q |
105 |
tggtgttcagtcggttctcactttggctacaaactttgtgctagatattcagaatactactactggtcctgatgacccgatggatacagttctacagaag |
204 |
Q |
| |
|
|||||| || ||||||||| ||||||||| ||||||||| |||||||||||||| |||| |||| || |||||| | ||||| |||||||||||||| |
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|
| T |
19974757 |
tggtgtccaactggttctcacgttggctacatactttgtgccagatattcagaatattactgttggttctaatgacctggtggatccagttctacagaag |
19974658 |
T |
|
| Q |
205 |
gaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactccctattga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19974657 |
gaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactccctattga |
19974589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 21017976 - 21018244
Alignment:
| Q |
7 |
tctcagactatgtttcatatgacttgacataacatctctgatgagctagttagacaacaatcaccattacatggcatgac--cttagtgcatactgccca |
104 |
Q |
| |
|
|||||||||| ||||||||| || ||||||||||||||||| ||||||||| ||||||||| ||||||||| || | |||||||||||||||||| |
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|
| T |
21017976 |
tctcagactacatttcatatgtttttacataacatctctgatgtgctagttaggcaacaatcatcattacatgacacaaaaacttagtgcatactgccca |
21018075 |
T |
|
| Q |
105 |
tggtgttcagtcggttctcactttggctacaaactttgtgctagatattcagaatactactactggtcctgatgacccgatggatacagttctacagaag |
204 |
Q |
| |
|
|||||| || ||||||||| ||||||||| ||||||||| |||||||||||||| |||| |||| || |||||| | ||||| |||||||||||||| |
|
|
| T |
21018076 |
tggtgtccaactggttctcacgttggctacatactttgtgccagatattcagaatattactgttggttctaatgacctggtggatccagttctacagaag |
21018175 |
T |
|
| Q |
205 |
gaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactccctattga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21018176 |
gaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactccctattga |
21018244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 27860132 - 27859862
Alignment:
| Q |
1 |
gaaaagtctcagactatgtttcatatgacttgacataacatctctgatgagctagttagacaacaatcaccattacatggcatgaccttagtgcatactg |
100 |
Q |
| |
|
||||||| ||||||| || |||||||| | | ||||||| ||||| |||||||||||| |||||||||| |||||||| ||||||||||||||| ||| |
|
|
| T |
27860132 |
gaaaagtttcagactttgcttcatatgtcgtcacataacgtctctaatgagctagttatgcaacaatcactattacatgacatgaccttagtgcaggctg |
27860033 |
T |
|
| Q |
101 |
cccatggtgttcagtcggttctcactttggctacaaactttgtgctagatattcagaatactactactggtcctgatgacccgatggatacagttctaca |
200 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||| |||||| ||||| || ||||||| |
|
|
| T |
27860032 |
cccatggtgtccattcggttctcactttggctacaaactttgtgccaagtattcagaatattactactggtcatgaagacccggtggatccaattctaca |
27859933 |
T |
|
| Q |
201 |
gaaggaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactccctatt |
271 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||| ||||| |
|
|
| T |
27859932 |
taaggaaatgaatttagtgcaagatttattagctcaaaatgcctcagctgaagtttctttcactctctatt |
27859862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Complemental strand, 19974473 - 19974438
Alignment:
| Q |
361 |
atgagagtttcaattaggttgatacctagttgggat |
396 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19974473 |
atgagagtttcaattaggttgataccaagttgggat |
19974438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 396
Target Start/End: Original strand, 21018360 - 21018395
Alignment:
| Q |
361 |
atgagagtttcaattaggttgatacctagttgggat |
396 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21018360 |
atgagagtttcaattaggttgataccaagttgggat |
21018395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 33 - 268
Target Start/End: Original strand, 5113 - 5342
Alignment:
| Q |
33 |
acataacatctctgatgagctagttagacaacaatcaccattacatggcatgaccttagtgcatactgcccatggtgttcagtcggttctcactttggct |
132 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||| || || |||| ||||||||| |
|
|
| T |
5113 |
acataacgtctttgatgagctagttaagcaacaatcaccattacatgacatgaccttagtgcagactgtccact------agccgattcttactttggct |
5206 |
T |
|
| Q |
133 |
acaaactttgtgctagatattcagaatactactactggtcctgatgacccgatggatacagttctacagaaggaaatgaatttagtgcaaaatttattag |
232 |
Q |
| |
|
||| ||||||||| |||||| || ||| || | |||||| |||||||||| ||||| ||||| |||| ||| ||||||||||||||||| || |||||| |
|
|
| T |
5207 |
acagactttgtgccggatatttagtatattattgctggtcttgatgacccgttggatccagttatacaaaagtaaatgaatttagtgcaagatgtattag |
5306 |
T |
|
| Q |
233 |
ctcaaagtgtctcagctgaagttcctttcactccct |
268 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5307 |
ctcaaagtgcctcagttgaagttcctttcactccct |
5342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 8229774 - 8229890
Alignment:
| Q |
155 |
agaatactactactggtcctgatgacccgatggatacagttctacagaaggaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagt |
254 |
Q |
| |
|
|||||| |||| |||||||||||||||| | ||| ||||||||||| ||||||||||||||| |||| ||||||||| |||||||| |||||||||| | |
|
|
| T |
8229774 |
agaatattactgttggtcctgatgacccggttgatccagttctacagcaggaaatgaatttagcgcaagatttattagttcaaagtgcctcagctgaaat |
8229873 |
T |
|
| Q |
255 |
tcctttcactccctatt |
271 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
8229874 |
tcctttcactgcctatt |
8229890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 45830880 - 45830947
Alignment:
| Q |
206 |
aaatgaatttagtgcaaaatttattagctcaaagtg--tctcagctgaagttcctttcactccctatt |
271 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| ||||| ||||||||| |||| ||||||||| |
|
|
| T |
45830880 |
aaatgaatttagtgcaagacttattagctcaaagtgtctctcaactgaagttcttttcgctccctatt |
45830947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 271
Target Start/End: Original strand, 10177786 - 10177890
Alignment:
| Q |
167 |
ctggtcctgatgacccgatggatacagttctacagaaggaaatgaatttagtgcaaaatttattagctcaaagtgtctcagctgaagttcctttcactcc |
266 |
Q |
| |
|
|||||| ||| |||||||||||| || | |||||| |||||||||||| ||| || ||||||||||| | |||| ||||| || ||||| ||||||| |
|
|
| T |
10177786 |
ctggtcttgacgacccgatggatccaatattacagagggaaatgaatttggtgaaagatttattagctaacagtgcctcagtagatgttccactcactcc |
10177885 |
T |
|
| Q |
267 |
ctatt |
271 |
Q |
| |
|
||||| |
|
|
| T |
10177886 |
ctatt |
10177890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 8612686 - 8612654
Alignment:
| Q |
384 |
acctagttgggatgtttctggcgatccttgatg |
416 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
8612686 |
acctagttgggatgtttctggcgctccttgatg |
8612654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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