View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8752_low_9 (Length: 371)
Name: NF8752_low_9
Description: NF8752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8752_low_9 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 77636 - 77281
Alignment:
| Q |
12 |
ataatactacaagtgtgaaaatttaannnnnnnatttggtatacttcaaaactaatccataggtttatttaattgaaaatttgcatcttaataaattggg |
111 |
Q |
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| T |
77636 |
ataatactacaagtgtgaaaatttaatttttttatttggtatacttcaaaactaatccataggtttatttaattgaaaatttgcatcttaataaattggc |
77537 |
T |
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| Q |
112 |
ttttcaggctgcagctagatatgtacacagtactttaagaaactcaagtacaacaatctcaaacatcattgggccagtggagcaaatggctttggctaat |
211 |
Q |
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| T |
77536 |
ttttcaggctgcagctagatatgtacacagtactttaagaaactcaagtacaacaatctcaaacatcattgggccagtggagcaaatggctttggctaat |
77437 |
T |
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| Q |
212 |
catccagttaaaggtctatacttcatggttgttggtccaccagaggtatgggaattcttgcacttaaatgtggttttacacttatgaaatgttaaaatca |
311 |
Q |
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| T |
77436 |
catccagttaaaggtctatacttcatggttgttggtccaccagaggcatgtgaattcttgcacttaaatgtggttttacacttttgaaatgttaaaatca |
77337 |
T |
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| Q |
312 |
atttttatctttagagtttagttatttagacatacgaaaaacgatatcatatctca |
367 |
Q |
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| T |
77336 |
atttttatctttagagtttagttatttagacacacgaaaaacgacatcatatctca |
77281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 69988 - 69872
Alignment:
| Q |
143 |
actttaagaaactcaagtacaacaatctcaaacatcattgggccagtggagcaaatggctttggctaatcatccagttaaaggtctatacttcatggttg |
242 |
Q |
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| T |
69988 |
actttgagaaattcaagcacaacaatttccaacataattggaccaatggagcaaatggctttggctaatcatccaattaaaggactatattttatggttg |
69889 |
T |
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| Q |
243 |
ttggtccaccagaggta |
259 |
Q |
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| T |
69888 |
ttggtccaccagaggta |
69872 |
T |
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