View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8753_high_1 (Length: 439)
Name: NF8753_high_1
Description: NF8753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8753_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 3730009 - 3729617
Alignment:
| Q |
19 |
gcacaacatatagaacagtaaaaaagtgaaattgactactgttaacaaaattgcaattagcaattagtaattgttttttcacttgcacccttttattcat |
118 |
Q |
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| T |
3730009 |
gcacaacatatagaacagtaaaaaagtgaaattgactactgttaacaaaattgcaattagcaattagtaattgttttttcacttgcacccttttattcat |
3729910 |
T |
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| Q |
119 |
atttatactctttcacatgagtcgccataaatgaattaagttaattgaattcatacatgtatgatatctttttctttttatagtttgtataaataatata |
218 |
Q |
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| T |
3729909 |
atttatactctttcacatgagtcgccataaatgaattaagttaattgaattcatacatgtatgatatcgttttctttttatagtttgtataaataatata |
3729810 |
T |
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| Q |
219 |
ac--ctcttattttggtaaatgaataatgatgaagcttcatcgttcatgttttttccggtttagacgatgtaagtctgcaataggctactaaaaagtatt |
316 |
Q |
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| T |
3729809 |
acctctcttattttggcaaatgaataataatgaagcttcatcgttcatgttttttccggtttagacgatgtaagtctgcaataggctactaaaaagtatt |
3729710 |
T |
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| Q |
317 |
tagcataaacaagaaaaatgtatttgttctaccaaattaaaccctcgaaaacatgtaccagggaagacacatggtgtactacatggaggataa |
409 |
Q |
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| T |
3729709 |
tagcataaacaagaaaaatgtatttgttctaccaaattaaaccctcgaaaacatgtgccagggaagacacatggtgtactacatggaggataa |
3729617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 34821568 - 34821494
Alignment:
| Q |
225 |
tattttggtaaatgaataatgatgaagcttcatcgttcatgttttttccggtttagacgatgtaagtctgcaata |
299 |
Q |
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| T |
34821568 |
tattttggtaaaggaacaacgaagaagtttcatcgttgatgttgtttccagtgtagacaatataagtctgcaata |
34821494 |
T |
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