View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8753_high_2 (Length: 408)
Name: NF8753_high_2
Description: NF8753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8753_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 115 - 392
Target Start/End: Original strand, 610448 - 610724
Alignment:
| Q |
115 |
gaaaagatagtgagagtgggagagaaaggaattggagaagaggcaatggaaatacatgtagtagaattgaggggatgggactatatttgtaatagccaaa |
214 |
Q |
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| T |
610448 |
gaaaggatagtgagagtgggagagaaaggaattggagaagaggcaatggaaatacatgtggtagaattgaggggatgggactatatttgtagtagccaaa |
610547 |
T |
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| Q |
215 |
aagtgaagannnnnnnaatgtcatgtcatgtagggagattatgaatggtgcctttttacaccactagaattatacaattcctaatccaccacatgataca |
314 |
Q |
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| T |
610548 |
aagtgaagagggggg-aatgtcatgtcatgtagggagattatgaatggtgcctttttacaccactagaattatacaattcctaatccaccacatgataca |
610646 |
T |
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| Q |
315 |
aaagtcattaaaaagacattttcaaaagaatgagaaaatgggtaagtaaacgaatatccactctactacacacattct |
392 |
Q |
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| T |
610647 |
aaagtcattaaaaagacattttcaaaagaatgagaaaatgggtaagtaaacgaatatccactctactacacacattct |
610724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 610326 - 610425
Alignment:
| Q |
16 |
atgaaggtaaaccgtggcaaacaattgcagccatttgatattgaaatctaaaaggataaaacagagtgttctgttttgtgttttgagatttatggttaag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
610326 |
atgaaggtaaaccgtggcaaacaattgcagccatttggtattgaaatctaaaaggataaaacagagtgttctgttttgtgttttgagatttatggttaag |
610425 |
T |
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