View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8753_high_3 (Length: 296)
Name: NF8753_high_3
Description: NF8753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8753_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 8287728 - 8288013
Alignment:
| Q |
1 |
ttatacatttcccatgtgaacacaagactgcataactctgattcaagacatttaaggacttttgtttatttggctctcat--gcgtgtaatgacagtcga |
98 |
Q |
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| T |
8287728 |
ttatacatttcccatgtgaacacaagattgcataactctgattcaagacatttagggacttttgtttatttggctctcatatgcgtgcaatgacagtcga |
8287827 |
T |
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| Q |
99 |
agatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaatcatcgagaaggtacgcttttctggagtctccgaaaaccatcttt |
198 |
Q |
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| T |
8287828 |
agatcagtcacaactatgtggatcgacatccttaggcatgggtggattcggtaaaacatcgaggaggtacgcttttctggagtttccggaaaccatcttt |
8287927 |
T |
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| Q |
199 |
aatttgtctgtaaatttcttttagtttatgttgttatctttgtttctaggaacacacaaagcaccatttctacatgttgttttttc |
284 |
Q |
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| T |
8287928 |
aatttgtctgtaattttcttttagtttatgttgttatctttgtttctaggaacacacaaagcaccatttctacatgttgttttttc |
8288013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 8269518 - 8269584
Alignment:
| Q |
87 |
aatgacagtcgaagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
153 |
Q |
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| T |
8269518 |
aatgacggttgaagatcggccacaactatgtggaacaacatccttggggatgggcggattcggtaaa |
8269584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 37646590 - 37646665
Alignment:
| Q |
180 |
gtctccgaaaaccatctttaatttgtctgtaaatttcttttagtttatgttgttatctttgtttctaggaacacac |
255 |
Q |
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| T |
37646590 |
gtctccggaaaccatctttaatttgtctataattttcttttagtttatgttgttatctttgtttgcaggaacacac |
37646665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 1250767 - 1250825
Alignment:
| Q |
95 |
tcgaagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
153 |
Q |
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| T |
1250767 |
tcgaagatcggccacaactatgtggagcaacatccttggggatgggtggattcggtaaa |
1250825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 26585307 - 26585362
Alignment:
| Q |
98 |
aagatcagccacaactatgtggatcaacatccttaggcatgggtggattcggtaaa |
153 |
Q |
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| T |
26585307 |
aagatcggccacaactatgtggagcaacaaccttgggaatgggtggattcggtaaa |
26585362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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