View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8753_low_1 (Length: 558)
Name: NF8753_low_1
Description: NF8753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8753_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 408 - 540
Target Start/End: Original strand, 30797325 - 30797456
Alignment:
| Q |
408 |
aaatatatgcttcttatagcgaaacatttcctcccgaatacattacagactgacttgtattatgtaactgcatctttagtggagcctcttattttttatc |
507 |
Q |
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| T |
30797325 |
aaatatatgtttcttatagcgaaacatttcctcccgaatgcatcac-gactgacttgtattatgtaactgcatctttagtggactctcttattttttatc |
30797423 |
T |
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| Q |
508 |
caatagcccatgttgtctgccaaaggaaatcta |
540 |
Q |
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| T |
30797424 |
caatagcctatgttgtctgccaaaggaaatcta |
30797456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 30797218 - 30797319
Alignment:
| Q |
100 |
atgaaaccgtaatgtaataaaacagagatctaaaggctattagtttcccacgttttctggaaattctcgtgatgcaattattcgctataacaagcatttc |
199 |
Q |
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| T |
30797218 |
atgaaatcgtaatctaataaaacagagatctaaaggctattagtttcccacgttttctggaaattcttgtgatgcaattattcgctttaacaagcatttc |
30797317 |
T |
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| Q |
200 |
cg |
201 |
Q |
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|| |
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| T |
30797318 |
cg |
30797319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 414 - 540
Target Start/End: Original strand, 49904516 - 49904642
Alignment:
| Q |
414 |
atgcttcttatagcgaaacatttcctcccgaatacattacagactgacttgtattatgtaactgcatctttagtggagcctctta-ttttttatccaata |
512 |
Q |
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| T |
49904516 |
atgcttcttacaacgaaacacttcctcccgaatgcatccc-gatggagttgtattaggtaactgcatctttagtggaccctcttatttttttatacaaca |
49904614 |
T |
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| Q |
513 |
gcccatgttgtctgccaaaggaaatcta |
540 |
Q |
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| T |
49904615 |
tcccatgttgtctgccataggagatcta |
49904642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 446
Target Start/End: Original strand, 5945405 - 5945437
Alignment:
| Q |
414 |
atgcttcttatagcgaaacatttcctcccgaat |
446 |
Q |
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| T |
5945405 |
atgcttcctatagcgaaacatttcctcccgaat |
5945437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 470 - 540
Target Start/End: Complemental strand, 1207331 - 1207261
Alignment:
| Q |
470 |
tgtaactgcatctttagtggagcctcttattttttatccaatagcccatgttgtctgccaaaggaaatcta |
540 |
Q |
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| T |
1207331 |
tgtaattgcatctttagtggaccctccttatttttatccaacagtccatgttgtctgccaaaggaaatcta |
1207261 |
T |
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