View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8753_low_3 (Length: 408)
Name: NF8753_low_3
Description: NF8753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8753_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 115 - 392
Target Start/End: Original strand, 610448 - 610724
Alignment:
| Q |
115 |
gaaaagatagtgagagtgggagagaaaggaattggagaagaggcaatggaaatacatgtagtagaattgaggggatgggactatatttgtaatagccaaa |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
610448 |
gaaaggatagtgagagtgggagagaaaggaattggagaagaggcaatggaaatacatgtggtagaattgaggggatgggactatatttgtagtagccaaa |
610547 |
T |
|
| Q |
215 |
aagtgaagannnnnnnaatgtcatgtcatgtagggagattatgaatggtgcctttttacaccactagaattatacaattcctaatccaccacatgataca |
314 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
610548 |
aagtgaagagggggg-aatgtcatgtcatgtagggagattatgaatggtgcctttttacaccactagaattatacaattcctaatccaccacatgataca |
610646 |
T |
|
| Q |
315 |
aaagtcattaaaaagacattttcaaaagaatgagaaaatgggtaagtaaacgaatatccactctactacacacattct |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
610647 |
aaagtcattaaaaagacattttcaaaagaatgagaaaatgggtaagtaaacgaatatccactctactacacacattct |
610724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 610326 - 610425
Alignment:
| Q |
16 |
atgaaggtaaaccgtggcaaacaattgcagccatttgatattgaaatctaaaaggataaaacagagtgttctgttttgtgttttgagatttatggttaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
610326 |
atgaaggtaaaccgtggcaaacaattgcagccatttggtattgaaatctaaaaggataaaacagagtgttctgttttgtgttttgagatttatggttaag |
610425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University