View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8753_low_6 (Length: 264)
Name: NF8753_low_6
Description: NF8753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8753_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 13034806 - 13035053
Alignment:
| Q |
1 |
aataaacaccatgcattaataaactatcaaattctagcatcaggattcgaatcccaaaccagcgcccccatgtggctgaaattgccaaaacaaccaacca |
100 |
Q |
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| T |
13034806 |
aataaacaccatgcattaataaactatcaaattctagcatcaggattcgaatcccaaactagcgcccccatgtcgctgaaattgccaaaacaaccaacca |
13034905 |
T |
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| Q |
101 |
tgggacctacttttagagggtatattaattgtcattggtgttttgagaaatttttaagtattagcctatcgtgtaccgtaaaacttgcctaagattgagt |
200 |
Q |
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| T |
13034906 |
tgggacctacttttagagggtatattaattgtcattggtgttttgagaaatttttaagtattagcctatcgtgtaccgtaaaacttgcctaagattgagt |
13035005 |
T |
|
| Q |
201 |
tgtatctcctttaatataagaaaagaacatgctgtggaaaacctctta |
248 |
Q |
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| T |
13035006 |
tgtatctcctttaatataagaaaaaaacatgctgtggaaaacctctta |
13035053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 6471743 - 6471871
Alignment:
| Q |
79 |
aaattgccaaaacaaccaaccatgggacctacttttagagggtatattaattgtcattggtgttttgagaaatttttaagtattagcctatcgtgtaccg |
178 |
Q |
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| T |
6471743 |
aaattgccaaaacaacaaactgtgagacctacttttaaagggtaggttaattgtcattgatgttttgagaaattttcaagtattagcctatcgtgtaccc |
6471842 |
T |
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| Q |
179 |
taaaacttgcctaagattgagttgtatct |
207 |
Q |
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| T |
6471843 |
taaaacttgcctaagattgagtagtatct |
6471871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 26405476 - 26405518
Alignment:
| Q |
203 |
tatctcctttaatataagaaaagaacatgctgtggaaaacctc |
245 |
Q |
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| T |
26405476 |
tatctcctttaatataagaaaagaacatgttgtggaaaacctc |
26405518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 27135256 - 27135215
Alignment:
| Q |
204 |
atctcctttaatataagaaaagaacatgctgtggaaaacctc |
245 |
Q |
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| T |
27135256 |
atctcctttaatataagaaaagaacatgttgtggaaaacctc |
27135215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 49819395 - 49819435
Alignment:
| Q |
204 |
atctcctttaatataagaaaagaacatgctgtggaaaacct |
244 |
Q |
| |
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| T |
49819395 |
atctcctttaatataagaaaagaacatattgtggaaaacct |
49819435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 18345723 - 18345685
Alignment:
| Q |
203 |
tatctcctttaatataagaaaagaacatgctgtggaaaa |
241 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||| |
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| T |
18345723 |
tatctcctttaatataagaaaaaaacatgttgtggaaaa |
18345685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 30212180 - 30212217
Alignment:
| Q |
204 |
atctcctttaatataagaaaagaacatgctgtggaaaa |
241 |
Q |
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| T |
30212180 |
atctcctttaatataagaaaaaaacatgttgtggaaaa |
30212217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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