View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8754_high_1 (Length: 433)
Name: NF8754_high_1
Description: NF8754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8754_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 447704 - 447438
Alignment:
| Q |
11 |
attatactcattagaatagccagaaattatatttgtataaaacactattgtgagaatacta--ggctaagaaaacagaaggaagaatcaaaatgattatc |
108 |
Q |
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| T |
447704 |
attatactcattagaatagccagaaactatatttgtataaaacactattgtgagaatactataggctaagaaaacagaaggaagaatcaaaatgattatc |
447605 |
T |
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| Q |
109 |
ctgtgatacaaagaatagccataaaaaatgagaatgaatgtgaactatattattagaatatgtaaataaaatagaatcatatcttttgccttggtgatgc |
208 |
Q |
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| T |
447604 |
ctgtgatacatagaatagccataaaaaatgagaatgaatgtgaattatattattagaatatgtaaataaaatagaatcatatcttttgccttggtgatgc |
447505 |
T |
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| Q |
209 |
tctagagcatttatagaatatcgatattgcagcttggaaatttcaaactcatttcaaagacatattt |
275 |
Q |
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| T |
447504 |
tctagagcatttatagaatatcgatattgcagctaggaaatttcaaactcatttcaaagacatattt |
447438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 447406 - 447262
Alignment:
| Q |
271 |
tatttacttgttcaaactcccacagttgcactaattgaacatttatttgtgttttggatttggttgactttcctgagatcaatcaccagtaaacaacaat |
370 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
447406 |
tattaacttgttcaaactcccacagttgcactaattgaacatttatttgtgttttgaatttggttgactttcctgagaccaatcacgagtaaacagcaat |
447307 |
T |
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| Q |
371 |
ataacatgatcc-ttttattctgttgagaataatgataaccaata |
414 |
Q |
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| T |
447306 |
ataacatgatcctttttattctgttgagaataatgataaccaata |
447262 |
T |
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