View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8754_high_6 (Length: 240)
Name: NF8754_high_6
Description: NF8754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8754_high_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 44631051 - 44631273
Alignment:
| Q |
18 |
tctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtgttcgatatacttttagtgtttattttacaactagagt |
117 |
Q |
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| T |
44631051 |
tctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtgttcgatatacttttagtgtttattttacaactagagt |
44631150 |
T |
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| Q |
118 |
gtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctgtatgtggcttgtatataaatgtttggtcgaaatcgtttgaatttcttgcatg |
217 |
Q |
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| T |
44631151 |
gtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctatatgtggcttgtatataaatgtttggtcgaaatcgtttgaatttcttgcatg |
44631250 |
T |
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| Q |
218 |
atataattctcatactcaaactt |
240 |
Q |
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| T |
44631251 |
atataattctcatactcaaactt |
44631273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 44637731 - 44637595
Alignment:
| Q |
80 |
gttcgatatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctgtatgtggcttgtat |
179 |
Q |
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| T |
44637731 |
gttcgatatgtttttattgtttattataccattggaatgtgtccaagaattggaggttacaaggattccatgaagacttctgtctatacgtagctcgtat |
44637632 |
T |
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| Q |
180 |
ataaatgtttggtcgaaatcgtttgaatttcttgcat |
216 |
Q |
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| T |
44637631 |
accagtgtttggtcgaaatcatttgaatttcttgcat |
44637595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 44691419 - 44691453
Alignment:
| Q |
169 |
gtggcttgtatataaatgtttggtcgaaatcgttt |
203 |
Q |
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| T |
44691419 |
gtggcttgtatataaatgtttggtagaaatcgttt |
44691453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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