View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8754_low_10 (Length: 229)

Name: NF8754_low_10
Description: NF8754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8754_low_10
NF8754_low_10
[»] chr7 (4 HSPs)
chr7 (45-117)||(49172351-49172423)
chr7 (139-208)||(49172282-49172351)
chr7 (1-40)||(48593579-48593618)
chr7 (138-206)||(40187634-40187703)
[»] chr5 (5 HSPs)
chr5 (136-201)||(32565516-32565582)
chr5 (137-207)||(6489000-6489071)
chr5 (137-205)||(20370130-20370198)
chr5 (145-208)||(11017177-11017241)
chr5 (137-192)||(27721687-27721743)
[»] chr1 (3 HSPs)
chr1 (136-201)||(48131231-48131297)
chr1 (137-207)||(42045369-42045440)
chr1 (138-190)||(44243867-44243920)
[»] chr2 (2 HSPs)
chr2 (140-207)||(34191305-34191373)
chr2 (137-190)||(346138-346192)
[»] chr8 (6 HSPs)
chr8 (145-191)||(41625195-41625242)
chr8 (138-206)||(11708980-11709049)
chr8 (137-201)||(27191751-27191816)
chr8 (137-201)||(39821877-39821942)
chr8 (135-182)||(33445561-33445609)
chr8 (135-190)||(33451363-33451419)
[»] scaffold0012 (1 HSPs)
scaffold0012 (136-201)||(118811-118877)
[»] chr6 (2 HSPs)
chr6 (136-174)||(11129641-11129679)
chr6 (145-192)||(30639438-30639486)
[»] chr4 (3 HSPs)
chr4 (138-207)||(13121538-13121608)
chr4 (137-206)||(22164267-22164337)
chr4 (145-192)||(50442759-50442807)
[»] chr3 (3 HSPs)
chr3 (138-192)||(20949933-20949986)
chr3 (139-208)||(37920994-37921064)
chr3 (138-206)||(48315022-48315091)
[»] scaffold0445 (1 HSPs)
scaffold0445 (145-208)||(4471-4535)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 49172423 - 49172351
Alignment:
Q  45 gaattctaattttatcttgacaatgcacgtgaatatacattctaagacgatgcacatgaaccacttcttatat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49172423 gaattctaattttatcttgacaatgcacgtgaatatacattctaagacgatgcacatgaaccacttcttatat 49172351  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 49172351 - 49172282
Alignment:
Q  139 tcctcatgagcttagctcagttggcaggaataatgctaatatatgtaaggtctgcagttcaaatcccgga 208  Q
    ||||| |||||||||||||||||  ||| | |||||||||||||||||||||||||||| ||||||||||    
T  49172351 tcctcgtgagcttagctcagttgatagggacaatgctaatatatgtaaggtctgcagtttaaatcccgga 49172282  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48593618 - 48593579
Alignment:
Q  1 atattccataaatctctgttctctttgtttctatgacttt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48593618 atattccataaatctctgttctctttgtttctatgacttt 48593579  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 40187703 - 40187634
Alignment:
Q  138 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccg 206  Q
    ||||||||||||||| ||||||||| ||| | ||||| ||||||||||||||||||| ||||||| ||||    
T  40187703 gtcctcatgagcttaactcagttggtagggacaatgcataatatatgtaaggtctgcggttcaaaccccg 40187634  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 32565516 - 32565582
Alignment:
Q  136 ttgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 201  Q
    |||||||| |||||||||||||| ||| ||| ||||||| |||||||||||||||| | ||||||||    
T  32565516 ttgtcctcgtgagcttagctcagctggtagggataatgcataatatatgtaaggtccgaagttcaaa 32565582  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 6489000 - 6489071
Alignment:
Q  137 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgg 207  Q
    ||||||| |||||||||||||||||| ||| | ||||| ||||||||| ||||||||  ||||||| |||||    
T  6489000 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccgg 6489071  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 20370198 - 20370130
Alignment:
Q  137 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatccc 205  Q
    ||||||| |||||||||||||||||| ||| ||||||| ||||||||  ||||| || ||||||||||||    
T  20370198 tgtcctcgtgagcttagctcagttggtagggataatgcataatatatacaaggtttg-agttcaaatccc 20370130  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 11017177 - 11017241
Alignment:
Q  145 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgga 208  Q
    |||| ||||||||||||| ||| ||||||| ||||||||| ||||||||  |||| |||||||||    
T  11017177 tgagtttagctcagttggtagggataatgcataatatatgcaaggtctgaggttcgaatcccgga 11017241  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 27721743 - 27721687
Alignment:
Q  137 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctg 192  Q
    ||||||| |||||||||||||||||| ||||| ||||| ||||||||| || |||||    
T  27721743 tgtcctcgtgagcttagctcagttggtaggaacaatgcataatatatgcaaagtctg 27721687  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 48131297 - 48131231
Alignment:
Q  136 ttgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 201  Q
    |||||||| |||| ||| ||||||||||||  ||||||| |||||||||||||||||| ||||||||    
T  48131297 ttgtcctcgtgagtttaactcagttggcagagataatgcataatatatgtaaggtctggagttcaaa 48131231  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 42045440 - 42045369
Alignment:
Q  137 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgg 207  Q
    ||||||| |||||||||||||||||| | | | ||||| ||||||||| |||||||| |||||||| |||||    
T  42045440 tgtcctcgtgagcttagctcagttggtatggacaatgcataatatatgcaaggtctggagttcaaaccccgg 42045369  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 44243867 - 44243920
Alignment:
Q  138 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtc 190  Q
    |||||| |||| ||||||||||||| ||||| ||||| ||||||||||||||||    
T  44243867 gtcctcgtgagtttagctcagttggtaggaacaatgcataatatatgtaaggtc 44243920  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 34191373 - 34191305
Alignment:
Q  140 cctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgg 207  Q
    ||||||||||||||||||||||| ||| | ||||| |||||||||||| ||||   |||||||||||||    
T  34191373 cctcatgagcttagctcagttggtagggacaatgcataatatatgtaaagtctaaggttcaaatcccgg 34191305  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 346192 - 346138
Alignment:
Q  137 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtc 190  Q
    ||||||| ||||||||||||||||||   ||||||||| ||||||||||||||||    
T  346192 tgtcctcgtgagcttagctcagttggtttgaataatgcataatatatgtaaggtc 346138  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 41625195 - 41625242
Alignment:
Q  145 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtct 191  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||    
T  41625195 tgagcttagctcagttggtatgaataatgcataatatatgtaaggtct 41625242  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 11708980 - 11709049
Alignment:
Q  138 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccg 206  Q
    |||||| |||||||||||||||||| ||| | ||||| ||||||||| |||||| | |||||||| ||||    
T  11708980 gtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtccgaagttcaaaccccg 11709049  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 27191751 - 27191816
Alignment:
Q  137 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 201  Q
    ||||||| |||||||||||||||||| | ||| ||| | ||||||||| |||||||| ||||||||    
T  27191751 tgtcctcgtgagcttagctcagttggtaagaacaattcataatatatgcaaggtctgaagttcaaa 27191816  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 39821877 - 39821942
Alignment:
Q  137 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 201  Q
    ||||||| |||||||||||||||||| ||| | ||||| ||||||||| ||||||||  |||||||    
T  39821877 tgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaa 39821942  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 182
Target Start/End: Original strand, 33445561 - 33445609
Alignment:
Q  135 gttgtcctcatgagcttagctcagttggcaggaataatgc-taatatat 182  Q
    ||||||||| |||||||||||||||||| ||||| ||||| ||||||||    
T  33445561 gttgtcctcgtgagcttagctcagttggtaggaacaatgcataatatat 33445609  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 33451419 - 33451363
Alignment:
Q  135 gttgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtc 190  Q
    ||||||||| |||||||||||||||||| | | ||||||| ||||||||| ||||||    
T  33451419 gttgtcctcgtgagcttagctcagttggtatggataatgcataatatatgcaaggtc 33451363  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 118811 - 118877
Alignment:
Q  136 ttgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaa 201  Q
    |||||||| ||||||||||||||||||   ||| ||||| ||| |||||||||||||| ||||||||    
T  118811 ttgtcctcgtgagcttagctcagttggtttgaacaatgcataaaatatgtaaggtctggagttcaaa 118877  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 11129679 - 11129641
Alignment:
Q  136 ttgtcctcatgagcttagctcagttggcaggaataatgc 174  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  11129679 ttgtcctcatgagcttagctcagttggtaggaacaatgc 11129641  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 30639486 - 30639438
Alignment:
Q  145 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctg 192  Q
    |||| ||||||||||||| ||||||||||| ||||||||| ||||||||    
T  30639486 tgagtttagctcagttggtaggaataatgcataatatatgcaaggtctg 30639438  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 13121538 - 13121608
Alignment:
Q  138 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgg 207  Q
    |||||| ||||||||||| |||||| ||| | ||||| ||||||||| |||||||| |||||||| |||||    
T  13121538 gtcctcgtgagcttagcttagttggtagggacaatgcataatatatgcaaggtctgaagttcaaaccccgg 13121608  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 22164337 - 22164267
Alignment:
Q  137 tgtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccg 206  Q
    ||||||| |||| |||||| |||||| ||||| ||||| ||||||||||||||||||  ||||||| ||||    
T  22164337 tgtcctcgtgagtttagcttagttggtaggaacaatgcataatatatgtaaggtctggggttcaaaccccg 22164267  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 50442807 - 50442759
Alignment:
Q  145 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctg 192  Q
    |||||||||||||||||| ||| ||||||| ||||||||| ||||||||    
T  50442807 tgagcttagctcagttggtagggataatgcataatatatgcaaggtctg 50442759  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 20949933 - 20949986
Alignment:
Q  138 gtcctcatgagcttagctcagttggcaggaataatgctaatatatgtaaggtctg 192  Q
    ||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||    
T  20949933 gtcctcatgagcttagctcagatggtatgaacaatgc-aatatatgtaaggtctg 20949986  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 37921064 - 37920994
Alignment:
Q  139 tcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgga 208  Q
    ||||| |||| ||||||||||||  ||| ||||||| ||||||||| || |||||| ||||||||||||||    
T  37921064 tcctcgtgagtttagctcagttgatagggataatgcataatatatgcaatgtctgcggttcaaatcccgga 37920994  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 48315091 - 48315022
Alignment:
Q  138 gtcctcatgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccg 206  Q
    |||||| |||||||||||||||||| | | ||||||| ||||||||| |||||| |  ||||||||||||    
T  48315091 gtcctcgtgagcttagctcagttggtaaggataatgcataatatatgcaaggtccggggttcaaatcccg 48315022  T

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Target: scaffold0445 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 4471 - 4535
Alignment:
Q  145 tgagcttagctcagttggcaggaataatgc-taatatatgtaaggtctgcagttcaaatcccgga 208  Q
    |||||||| || |||||  ||||||||||| |||||||||||||||||  ||||| |||||||||    
T  4471 tgagcttaactaagttgataggaataatgcataatatatgtaaggtctagagttcgaatcccgga 4535  T

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