View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8754_low_11 (Length: 213)

Name: NF8754_low_11
Description: NF8754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8754_low_11
NF8754_low_11
[»] chr8 (22 HSPs)
chr8 (3-213)||(20824194-20824404)
chr8 (3-213)||(37434030-37434240)
chr8 (7-213)||(17699384-17699590)
chr8 (1-213)||(2170236-2170450)
chr8 (1-213)||(43270346-43270558)
chr8 (1-213)||(13200019-13200231)
chr8 (4-208)||(32266463-32266667)
chr8 (153-211)||(41665403-41665461)
chr8 (1-83)||(42177727-42177809)
chr8 (130-211)||(13396413-13396494)
chr8 (1-82)||(13879650-13879731)
chr8 (28-176)||(2529809-2529957)
chr8 (151-209)||(172149-172207)
chr8 (130-208)||(7924411-7924489)
chr8 (130-208)||(8299828-8299906)
chr8 (130-208)||(9922626-9922704)
chr8 (4-70)||(5181569-5181635)
chr8 (116-202)||(25891077-25891163)
chr8 (127-212)||(25090409-25090494)
chr8 (164-213)||(42177621-42177670)
chr8 (27-71)||(13396310-13396354)
chr8 (27-71)||(41665543-41665587)
[»] chr6 (17 HSPs)
chr6 (3-213)||(17579113-17579323)
chr6 (3-213)||(17573687-17573897)
chr6 (3-213)||(10577281-10577491)
chr6 (6-213)||(17606366-17606573)
chr6 (3-213)||(21630139-21630351)
chr6 (1-213)||(20883065-20883277)
chr6 (7-213)||(11462314-11462515)
chr6 (130-213)||(18651266-18651349)
chr6 (130-213)||(24767456-24767539)
chr6 (130-212)||(2553662-2553744)
chr6 (130-212)||(12734150-12734232)
chr6 (130-213)||(15958845-15958928)
chr6 (151-212)||(21168245-21168306)
chr6 (155-210)||(14373026-14373081)
chr6 (127-213)||(13937722-13937808)
chr6 (27-71)||(2553559-2553603)
chr6 (4-68)||(21168124-21168188)
[»] chr5 (23 HSPs)
chr5 (3-213)||(8300214-8300424)
chr5 (3-213)||(25857456-25857666)
chr5 (3-213)||(33385406-33385616)
chr5 (3-213)||(27766940-27767150)
chr5 (3-211)||(10776662-10776870)
chr5 (1-213)||(18359124-18359335)
chr5 (27-212)||(23238306-23238491)
chr5 (130-209)||(28535711-28535790)
chr5 (130-212)||(8228051-8228133)
chr5 (127-213)||(26072914-26073000)
chr5 (130-212)||(30732347-30732429)
chr5 (151-212)||(27117194-27117255)
chr5 (1-80)||(27795379-27795458)
chr5 (130-212)||(12825224-12825306)
chr5 (130-208)||(42513745-42513823)
chr5 (13-86)||(19255282-19255355)
chr5 (154-213)||(19255154-19255213)
chr5 (130-209)||(31641537-31641615)
chr5 (130-209)||(35983827-35983906)
chr5 (154-213)||(42928180-42928239)
chr5 (128-213)||(18089793-18089878)
chr5 (3-71)||(18089935-18090003)
chr5 (127-213)||(33169680-33169766)
[»] chr1 (11 HSPs)
chr1 (3-213)||(16917841-16918051)
chr1 (3-213)||(43388265-43388475)
chr1 (1-213)||(37191242-37191454)
chr1 (130-212)||(51052505-51052587)
chr1 (130-212)||(11909138-11909220)
chr1 (133-212)||(35541077-35541156)
chr1 (130-208)||(6050628-6050706)
chr1 (130-211)||(47623111-47623192)
chr1 (1-82)||(51993891-51993972)
chr1 (151-203)||(22191823-22191875)
chr1 (169-197)||(40563605-40563633)
[»] chr3 (21 HSPs)
chr3 (3-207)||(7031055-7031259)
chr3 (3-213)||(11203717-11203927)
chr3 (3-213)||(29523777-29523987)
chr3 (3-213)||(12342258-12342467)
chr3 (3-211)||(33496445-33496653)
chr3 (3-213)||(36801107-36801317)
chr3 (1-213)||(35214403-35214615)
chr3 (127-213)||(19890700-19890786)
chr3 (130-211)||(19920263-19920344)
chr3 (130-212)||(2364302-2364384)
chr3 (130-212)||(7312801-7312883)
chr3 (130-212)||(34332848-34332930)
chr3 (130-210)||(10323606-10323686)
chr3 (130-209)||(40930564-40930643)
chr3 (130-213)||(26771021-26771104)
chr3 (127-213)||(963195-963281)
chr3 (127-213)||(2755864-2755950)
chr3 (130-208)||(7032343-7032421)
chr3 (127-213)||(48570071-48570157)
chr3 (25-82)||(48570202-48570259)
chr3 (27-71)||(34332989-34333033)
[»] chr4 (22 HSPs)
chr4 (3-213)||(12697711-12697921)
chr4 (3-213)||(8360998-8361208)
chr4 (3-122)||(4548342-4548461)
chr4 (1-213)||(20002614-20002833)
chr4 (130-213)||(45472741-45472824)
chr4 (130-213)||(55725718-55725801)
chr4 (127-213)||(2822069-2822155)
chr4 (130-211)||(19755292-19755373)
chr4 (130-211)||(19784433-19784514)
chr4 (1-82)||(54483322-54483403)
chr4 (130-213)||(7403938-7404021)
chr4 (10-212)||(1828573-1828775)
chr4 (130-212)||(15740246-15740328)
chr4 (4-208)||(13270928-13271132)
chr4 (130-210)||(47418829-47418909)
chr4 (130-208)||(23642628-23642706)
chr4 (130-208)||(47685932-47686010)
chr4 (1-82)||(48311991-48312072)
chr4 (154-199)||(136457-136502)
chr4 (4-59)||(7403812-7403867)
chr4 (4-59)||(11587384-11587439)
chr4 (4-68)||(15740120-15740184)
[»] chr2 (13 HSPs)
chr2 (1-210)||(14439649-14439857)
chr2 (1-213)||(10999983-11000194)
chr2 (1-213)||(12645432-12645644)
chr2 (4-213)||(15917553-15917762)
chr2 (4-213)||(41206915-41207124)
chr2 (130-210)||(28252745-28252825)
chr2 (130-212)||(4552194-4552276)
chr2 (127-213)||(40176690-40176776)
chr2 (1-82)||(33515947-33516028)
chr2 (1-82)||(40176565-40176646)
chr2 (130-213)||(17764994-17765077)
chr2 (130-213)||(38604406-38604489)
chr2 (25-57)||(28252640-28252672)
[»] chr7 (12 HSPs)
chr7 (45-213)||(18532568-18532736)
chr7 (2-213)||(25619356-25619567)
chr7 (1-213)||(37254654-37254866)
chr7 (130-212)||(11277285-11277367)
chr7 (130-213)||(235469-235552)
chr7 (130-208)||(17720660-17720738)
chr7 (4-210)||(29967874-29968080)
chr7 (151-213)||(47877029-47877091)
chr7 (130-208)||(4938165-4938243)
chr7 (151-211)||(37919590-37919650)
chr7 (1-49)||(18530406-18530454)
chr7 (27-68)||(37919466-37919507)
[»] scaffold0472 (2 HSPs)
scaffold0472 (130-212)||(3277-3359)
scaffold0472 (27-71)||(3174-3218)
[»] scaffold0369 (1 HSPs)
scaffold0369 (130-208)||(11242-11320)
[»] scaffold0034 (1 HSPs)
scaffold0034 (130-208)||(105880-105958)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 20824194 - 20824404
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20824194 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 20824293  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||  |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20824294 atccctcgtgccaccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaatta 20824393  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  20824394 actccatattt 20824404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 37434030 - 37434240
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  37434030 aggccacaatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagatata 37434129  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| || |||||||||| || ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| || |||||||||||||    
T  37434130 atcccacgttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaagaatagagacttttaaaggaacatgtttatgccaaatta 37434229  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  37434230 actccatattt 37434240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 17699384 - 17699590
Alignment:
Q  7 cacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataatcc 106  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||| ||||||||    
T  17699384 cacaatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcctacatcccgatacacaaaatcgattttccacagatataatcc 17699483  T
Q  107 caagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactc 206  Q
    || ||||||||||||| ||  |||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  17699484 catgtgccaccaaatttgatatagtaggtaaacgatccctcagcagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaattaactc 17699583  T
Q  207 catattt 213  Q
    |||||||    
T  17699584 catattt 17699590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 2170236 - 2170450
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaac--cggttttccacagc 98  Q
    ||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  || ||||||||||     
T  2170236 ataggccacaatgcaccaaaaattggacaagacaaaaacaaatgattcacatcttcaacctgcccacaccccgttacacaaaacaccgattttccacaga 2170335  T
Q  99 tataatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaa 198  Q
    || ||||||| || | |||||||| || ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||     
T  2170336 tagaatcccacgttctaccaaatttgatttagtaggtaaacgatccctcaacggtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccag 2170435  T
Q  199 attaactccatattt 213  Q
    |||||||||||||||    
T  2170436 attaactccatattt 2170450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 43270346 - 43270558
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    |||| |||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||   |||||||| ||    
T  43270346 atagaccacaatgcaccaaaaattggacaagacaaaaacaaatgattcacatcttcaacctgcccacaacccgttacacaaaaccgagcttccacagata 43270445  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
     |||| || || | |||||||| |  |||||||| || |||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||    
T  43270446 gaatctcacgttctaccaaatttgttttagtaggcaaacgatccttcaacagtcgccaagtaaggatagaaacttttaaaggaacctgtttatgccagat 43270545  T
Q  201 taactccatattt 213  Q
     ||||||||||||    
T  43270546 gaactccatattt 43270558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 13200019 - 13200231
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    ||||||||||| || |||||| | || ||||||||||| | |||| ||||||||||||| |||||||| || || |||||||||||    |||| || ||    
T  13200019 ataggccacaatgcgccaaaaattgggcaagacaaaaacatatgagtcacatcttcaacatgcccacacccagtaacacaaaaccgagcctccataggta 13200118  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
     ||| |   |  |  |||||||  | || |||||||| |||||||| || ||  ||||||||||||| |||||||||| ||||||||| ||||||||||     
T  13200119 gaattctgcgctctgccaaattgtattttgtaggtaaacgatccctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaac 13200218  T
Q  201 taactccatattt 213  Q
    |||||||||||||    
T  13200219 taactccatattt 13200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 32266463 - 32266667
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataa 103  Q
    |||||||| |||| ||||||   |||||||||||| |||||||| ||||||||||| | ||||||||| |  ||||| |||||    |||| || || ||    
T  32266463 ggccacaatgcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaa 32266562  T
Q  104 tcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaa 203  Q
    | ||| |     ||||||||   || |||||||| ||||| || || |||| ||||||||||||||| ||||| | ||||||||| ||||||||||||||    
T  32266563 tgccacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaa 32266662  T
Q  204 ctcca 208  Q
    |||||    
T  32266663 ctcca 32266667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 41665461 - 41665403
Alignment:
Q  153 tcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatat 211  Q
    |||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||    
T  41665461 tcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatat 41665403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 42177809 - 42177727
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaa 83  Q
    ||||||||||| | ||| ||| | |||||||| ||||| | |||||||||||||||||| |||||||||||||| ||||||||    
T  42177809 ataggccacaatgtaccgaaaattggacaagagaaaaacatatgattcacatcttcaacatgcccacatcccgtgacacaaaa 42177727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 13396413 - 13396494
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatat 211  Q
    |||||||| ||||| || |  |||||||||||||||||||| ||||| | |||||| || ||||||||||||||||||||||    
T  13396413 gtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacttgtttatgccaaattaactccatat 13396494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13879731 - 13879650
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaa 82  Q
    ||||||||||||||||||||    |||||||||||||| | ||||  |||||||||||| |||||||||||||| |||||||    
T  13879731 ataggccacaaagcaccaaagaaaggacaagacaaaaacagatgagacacatcttcaacatgcccacatcccgtgacacaaa 13879650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 2529809 - 2529957
Alignment:
Q  28 caagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataatcccaagtgccaccaaattagact 127  Q
    ||||||||||| |||||| ||||||||||||| |||||||| || || |||||||||||    |||| |  || ||| ||| |  | ||||||||  | |    
T  2529809 caagacaaaaacaaatgagtcacatcttcaacatgcccacaccctgtaacacaaaaccgagcctccaaaagtagaattccacgatctaccaaattgtatt 2529908  T
Q  128 tagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttt 176  Q
    | ||||||||||||||||| || || |||||||||||||| ||||||||    
T  2529909 ttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttt 2529957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 172149 - 172207
Alignment:
Q  151 agtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccat 209  Q
    |||||||||||||||||||| ||||| | ||||||||| |||||||||||||| |||||    
T  172149 agtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccat 172207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 7924411 - 7924489
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||    
T  7924411 gtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 7924489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 8299828 - 8299906
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||    
T  8299828 gtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtcca 8299906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 9922626 - 9922704
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  ||||| || ||||||||||||||||| | |||||||||  ||||||||||||||||||    
T  9922626 gtaggtaaccgatccctcagaagtcgtcatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaactcca 9922704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 5181569 - 5181635
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatc 70  Q
    |||||||| ||||||||||| || ||||||||||| | ||||||| |||||||||| ||||| ||||    
T  5181569 ggccacaaggcaccaaaagttgggcaagacaaaaacatatgattctcatcttcaacttgcccgcatc 5181635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 25891077 - 25891163
Alignment:
Q  116 ccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||||||| |||||||||| |||||| |  | ||||||||| |||| ||| || || |||| ||||||||| |||||||||||||    
T  25891077 ccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacacctttagaggaacctgattatgccaaatta 25891163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 25090409 - 25090494
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    ||||||||||  |||||||| ||||  |||||||||||||| |||||||||| ||| ||||| || ||| | | ||||||||||||    
T  25090409 ttagtaggtagtcgatccctcaacaaccgccaagcaaggattgaaacttttagaggtacctgtttgtgctagactaactccatatt 25090494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 42177670 - 42177621
Alignment:
Q  164 ggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||||||||||||||||| | |||||| |||||||||| ||||    
T  42177670 ggatagaaacttttaaaggaacctgttaatgccatattaactccaaattt 42177621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 13396310 - 13396354
Alignment:
Q  27 acaagacaaaaataaatgattcacatcttcaacctgcccacatcc 71  Q
    |||||||||||| |||||||| ||||||||||| | |||||||||    
T  13396310 acaagacaaaaacaaatgattaacatcttcaacgttcccacatcc 13396354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 41665587 - 41665543
Alignment:
Q  27 acaagacaaaaataaatgattcacatcttcaacctgcccacatcc 71  Q
    |||||||||||| |||||||| ||||||||||| | |||||||||    
T  41665587 acaagacaaaaacaaatgattaacatcttcaacgttcccacatcc 41665543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 17579323 - 17579113
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17579323 aggccacaaggcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 17579224  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||  |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17579223 atccctcgtgccaccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaatta 17579124  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  17579123 actccatattt 17579113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 17573897 - 17573687
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17573897 aggccacaaggcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 17573798  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||  |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  17573797 atccctcgtgccaccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaatcttttaaaggaacctgtttatgccaaatta 17573698  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  17573697 actccatattt 17573687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 10577491 - 10577281
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  10577491 aggccacaatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagttata 10577392  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| || |||||||||| || ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  10577391 atcccacgttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaatta 10577292  T
Q  203 actccatattt 213  Q
    |||| ||||||    
T  10577291 actctatattt 10577281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 17606573 - 17606366
Alignment:
Q  6 ccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataatc 105  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| || |||||||||||||||||     
T  17606573 ccacaatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgtatcccgttacacaaaatcgattttccacagctataatt 17606474  T
Q  106 ccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaact 205  Q
    ||| || |||||||||| || |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17606473 ccacgttccaccaaatttgatttagtaggtaaatgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaact 17606374  T
Q  206 ccatattt 213  Q
    ||||||||    
T  17606373 ccatattt 17606366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 21630351 - 21630139
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  21630351 aggccacaaagcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagatata 21630252  T
Q  103 atcccaagtgccaccaaa--ttagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
    |||||| || ||||||||  || || || |||||||| |||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  21630251 atcccacgttccaccaaatttttgattttgtaggtaaacgatccctcaatagtcgccaaacaaggatagaaacttttaaaggaacctggttatgccaaat 21630152  T
Q  201 taactccatattt 213  Q
    |||||||||||||    
T  21630151 taactccatattt 21630139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 20883277 - 20883065
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    ||||||||||| ||||| ||| | |||||||||||||| | |||||||| ||||||||| |||||||||||||| |||||||||||    ||||||| ||    
T  20883277 ataggccacaatgcaccgaaaattggacaagacaaaaacatatgattcatatcttcaacatgcccacatcccgtgacacaaaaccgagcctccacagata 20883178  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
    |||| ||| |  | ||||| || || ||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||  |||||||| ||    
T  20883177 taatgccacgatctaccaagttcgatttagtaggtaaacaatccctcaacagccgccaagcaaggatagaaacttttaaaggaacctatttatgccagat 20883078  T
Q  201 taactccatattt 213  Q
    |||||||||||||    
T  20883077 taactccatattt 20883065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 213
Target Start/End: Original strand, 11462314 - 11462515
Alignment:
Q  7 cacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataatcc 106  Q
    ||||| ||||| ||| | |||||||||||||| | |||||||||||||||||| |||||||||||||| ||| |||||||  | ||| ||  |||||| |    
T  11462314 cacaatgcaccgaaaattggacaagacaaaaacatatgattcacatcttcaacatgcccacatcccgtgacaaaaaaccgagtctccgcatatataatgc 11462413  T
Q  107 caagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactc 206  Q
    || |  |  |||| || || |||||||||||  ||||||| |||||  ||||||||||||| |||||||||     |||||| |||| ||| ||||||||    
T  11462414 cacgatctgccaagttggatttagtaggtaaaagatccctcaacagctgccaagcaaggattgaaactttt-----aacctgtttataccagattaactc 11462508  T
Q  207 catattt 213  Q
    |||||||    
T  11462509 catattt 11462515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 18651349 - 18651266
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||||    
T  18651349 gtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatattt 18651266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 24767539 - 24767456
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||| ||||||||||  ||||| |||||||||||||| ||||| | ||||||||| |||||| |||||||||||||||||    
T  24767539 gtaggtaaccgatccctaagaagtcgtcaagcaaggatagagactttgataggaacctgtttatgcaaaattaactccatattt 24767456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 2553662 - 2553744
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| |||||  | || |||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  2553662 gtaggtaaccgatctttcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatt 2553744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 12734150 - 12734232
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||||||||| |||||||||||||| ||||||||    
T  12734150 gtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaaatccatatt 12734232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 15958928 - 15958845
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||  ||||||| || || ||||||||||| ||||| ||||| | ||||||||| |||||||| ||||||| |||||||    
T  15958928 gtaggtaaatgatccctcaaaagccgccaagcaagaatagagactttaagaggaacctgtttatgccatattaacttcatattt 15958845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 21168245 - 21168306
Alignment:
Q  151 agtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||| |||||| |||||||| ||||| | ||||||||  |||||||||||||||||||||||    
T  21168245 agtctccaagctaggatagatactttgagaggaacctatttatgccaaattaactccatatt 21168306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 210
Target Start/End: Complemental strand, 14373081 - 14373026
Alignment:
Q  155 gccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccata 210  Q
    |||||||||| ||||| ||||||| ||| ||||| |||||||||||||| ||||||    
T  14373081 gccaagcaagaatagatacttttagaggtacctgtttatgccaaattaaatccata 14373026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 13937722 - 13937808
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||| || ||||| | ||  ||||||||||  ||||| ||||| ||||| ||||| || |||||||| ||||||||||||    
T  13937722 ttagtaggtaaccggtccctcagcaaacgccaagcaaaaatagacactttcaaaggcacctgtttgtgccaaatcaactccatattt 13937808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 2553559 - 2553603
Alignment:
Q  27 acaagacaaaaataaatgattcacatcttcaacctgcccacatcc 71  Q
    |||||||||||| |||||||| ||||||||||| | |||||||||    
T  2553559 acaagacaaaaacaaatgattaacatcttcaacgttcccacatcc 2553603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 21168124 - 21168188
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccaca 68  Q
    ||||| ||||||||||||||   |||||||||||| | |||||| ||||||||||| | ||||||    
T  21168124 ggccataaagcaccaaaagttacacaagacaaaaacatatgattaacatcttcaacattcccaca 21168188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 8300424 - 8300214
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8300424 aggccacaaggcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 8300325  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||  |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  8300324 atccctcgtgccaccaaattagatttagtaggtaagcgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaatta 8300225  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  8300224 actccatattt 8300214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 25857666 - 25857456
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25857666 aggccacaaggcaccaaaagtcaaacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaatcggttttccacagctata 25857567  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||  |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25857566 atccctcgtgccaccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaatta 25857467  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  25857466 actccatattt 25857456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 33385616 - 33385406
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  33385616 aggccacaatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgatacacaaaaccgattttccacagatata 33385517  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    || ||| ||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  33385516 attccacgtgccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaatta 33385417  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  33385416 actccatattt 33385406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 27766940 - 27767150
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||    
T  27766940 aggccacaaagcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacatatata 27767039  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| || |||||||||| || || |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  27767040 atcccacgttccaccaaatttgattttgtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaatta 27767139  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  27767140 actccatattt 27767150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 10776662 - 10776870
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||    
T  10776662 aggccacaatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacttgcccacatcccgatacacaaaaccgattttccacagatata 10776761  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| ||||||||||||| || ||||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  10776762 atcccacgtgccaccaaatttgatttagtaggtaaacgatccctcagcagtcgccaagcaaggatagaaacttttaagggaacctgtttatgccaaatta 10776861  T
Q  203 actccatat 211  Q
    |||||||||    
T  10776862 actccatat 10776870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 18359335 - 18359124
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    ||||||||||| ||||| ||| |||||||||||||||| | |||||||||||||||||| |||||| ||||||| ||||||||||| |  ||||||  ||    
T  18359335 ataggccacaatgcaccgaaaatcggacaagacaaaaacatatgattcacatcttcaacatgcccagatcccgtgacacaaaaccgatcctccacatata 18359236  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
    |||| | | |  |  |||| || || ||||||||||| |||||||| ||||  |||||||||||||| |||||||||||||||||||| |||||| | ||    
T  18359235 taatgc-acgatctgccaagttggatttagtaggtaaacgatccctcaacaaccgccaagcaaggattgaaacttttaaaggaacctgtttatgctagat 18359137  T
Q  201 taactccatattt 213  Q
    |||||||||||||    
T  18359136 taactccatattt 18359124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 27 - 212
Target Start/End: Original strand, 23238306 - 23238491
Alignment:
Q  27 acaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataatcccaagtgccaccaaattagac 126  Q
    |||||||||||| |||||||| ||||||||||| | ||||||||| |  ||||| |||||    |||| ||||| ||| ||| |     ||||||||       
T  23238306 acaagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaagctaaaatgccacggtttgccaaattactt 23238405  T
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    || |||||||| ||||| || || |||| ||||||||||||||||||||| | ||||||||  |||||||||||||||||||||||    
T  23238406 ttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagaaactttgagaggaacctatttatgccaaattaactccatatt 23238491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 28535790 - 28535711
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccat 209  Q
    |||||||| |||||||| |  |||||||||||||||||||||||||| | |||||||||  |||||||||||||||||||    
T  28535790 gtaggtaaccgatccctcagaagtcgccaagcaaggatagaaactttgagaggaacctgtgtatgccaaattaactccat 28535711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 8228051 - 8228133
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| ||||| || || |||| ||||||||||||||| ||||| | ||||||||| ||||| |||||||||||||||||    
T  8228051 gtaggtaaccgatctctcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaactccatatt 8228133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 26072914 - 26073000
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||| |||||||| |||||||||||| ||| |||||  ||||| |||||||| |  ||||||||||||||||||| ||||    
T  26072914 ttagtaggtaatcgatccctcaacagtcgccaaacaaagatagggactttcaaaggaacatatttatgccaaattaactccaaattt 26073000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 30732429 - 30732347
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| |||||||| |  ||||||||||||| |||||| ||||| | ||||||||| |||||||||||||| ||||||||    
T  30732429 gtaggtaaccgatccctcagaagtcgccaagcaaagatagatactttgagaggaacctgtttatgccaaattaagtccatatt 30732347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 27117255 - 27117194
Alignment:
Q  151 agtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||||||||||||||| ||||| | ||||||||| |||||||||||||| ||||||||    
T  27117255 agtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccatatt 27117194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 27795379 - 27795458
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacaca 80  Q
    ||||||||||||||||||||    |||||||||||||| ||||||  |||||||||||| |||||||| ||||| |||||    
T  27795379 ataggccacaaagcaccaaagaaaggacaagacaaaaacaaatgagacacatcttcaacatgcccacagcccgtgacaca 27795458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 12825224 - 12825306
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| |||||||| |  |||||||||||||||||| | ||||| | |||||| || |||||||||||||| ||||||||    
T  12825224 gtaggtaaccgatccctcagaagtcgccaagcaaggatacatactttgagaggaacttgtttatgccaaattaagtccatatt 12825306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 42513745 - 42513823
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||    
T  42513745 gtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 42513823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 19255355 - 19255282
Alignment:
Q  13 gcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccg 86  Q
    ||||||||||| ||||||||||| || |||||||| ||||||||||| ||||| ||||| || ||||| |||||    
T  19255355 gcaccaaaagttggacaagacaagaacaaatgattgacatcttcaacgtgcccgcatccagtgacacacaaccg 19255282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 19255213 - 19255154
Alignment:
Q  154 cgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||||||||| ||||| | || || ||| ||||||||||||||||||||||||    
T  19255213 cgccaagcaaggatagatactttgagagaaatctgtttatgccaaattaactccatattt 19255154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 31641537 - 31641615
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccat 209  Q
    |||||||| |||||||| |  |||| ||| |||||||||||||| |||| |||||||||  |||||||||||||||||||    
T  31641537 gtaggtaaccgatccctcagtagtctccatgcaaggatagaaac-tttagaggaacctgtgtatgccaaattaactccat 31641615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 35983906 - 35983827
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccat 209  Q
    |||||||| |||| ||| |  |||||||||||||||||||| ||||| | |||||||||  || ||||||||||||||||    
T  35983906 gtaggtaaccgattcctcagaagtcgccaagcaaggatagatactttgagaggaacctgtgtaagccaaattaactccat 35983827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 42928180 - 42928239
Alignment:
Q  154 cgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||| |||||||||| ||||| | ||||||||| |||| |||||||||||||||||||    
T  42928180 cgccaaacaaggatagagactttgagaggaacctgtttataccaaattaactccatattt 42928239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 18089878 - 18089793
Alignment:
Q  128 tagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||||| ||||| || || ||||| ||||||| |||||| ||||| || || ||||| || |||||||||||||||| ||||    
T  18089878 tagtaggtaaacgatctctcaatagtcgtcaagcaaagatagagactttcaacggtacctgtttgtgccaaattaactccaaattt 18089793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 18090003 - 18089935
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcc 71  Q
    ||||||||| || ||||||  ||| ||||||||||| | ||||||||| || |||||||||||||||||    
T  18090003 aggccacaacgctccaaaaaccgggcaagacaaaaacagatgattcacgtcctcaacctgcccacatcc 18089935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 33169680 - 33169766
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||| || ||||| | ||  ||||||||||  ||||| ||||| ||||| ||||| || |||||||| ||||||||||||    
T  33169680 ttagtaggtaaccggtccctcagcaaacgccaagcaaaaatagacactttcaaaggcacctgtttgtgccaaatcaactccatattt 33169766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 16918051 - 16917841
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  16918051 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccattacacaaaaccggttttccgcagctata 16917952  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||  |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16917951 atccctcgtgccaccaaattagatttagtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaatta 16917852  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  16917851 actccatattt 16917841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 43388265 - 43388475
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  43388265 aggccacaatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcctgcatcccgttacacaaaaccgattttccacagctata 43388364  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| || ||||||| || || ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43388365 atcccacgttccaccaattttgatttagtaggtaaacgatccctcaacaatcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaatta 43388464  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  43388465 actccatattt 43388475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 37191454 - 37191242
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    |||||||| || ||||| ||| | |||||||||||||| | |||||||||||||||||| |||||||||||||| |||||||| || |  ||||||| |     
T  37191454 ataggccataatgcaccgaaaattggacaagacaaaaacatatgattcacatcttcaacatgcccacatcccgtgacacaaaatcgatcctccacagatg 37191355  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
    |||| ||| |  |  |||| || || ||||||||||| ||||| || ||||| ||||||||||||||| ||||||||||| ||||| | |||||||| ||    
T  37191354 taatgccacgatctgccaagttggatttagtaggtaatcgatctctcaacagccgccaagcaaggatataaacttttaaatgaaccagtttatgccagat 37191255  T
Q  201 taactccatattt 213  Q
    |||||||||||||    
T  37191254 taactccatattt 37191242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 51052505 - 51052587
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||||||||| |||||||||||||| ||||||||    
T  51052505 gtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccatatt 51052587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 11909220 - 11909138
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| |||||||| |  ||||||||||||| |||||| ||||| | ||||||||| |||||||||||||| ||||||||    
T  11909220 gtaggtaaccgatccctcagaagtcgccaagcaatgatagatactttgagaggaacctgtttatgccaaattaagtccatatt 11909138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 35541077 - 35541156
Alignment:
Q  133 ggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    ||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||||||    
T  35541077 ggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccatatt 35541156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 6050628 - 6050706
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||    
T  6050628 gtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 6050706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 47623192 - 47623111
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatat 211  Q
    ||||||||||| ||||| || || ||||||||||| ||||| ||||| | ||| ||||| |||||||||||||| |||||||    
T  47623192 gtaggtaagcggtccctcaaaagccgccaagcaagaatagatactttgagaggtacctgtttatgccaaattaattccatat 47623111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 51993972 - 51993891
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaa 82  Q
    ||||||||||||||||| ||    |||||||||||||  ||||||  |||||||||||| |||||||||||||| |||||||    
T  51993972 ataggccacaaagcaccgaagaatggacaagacaaaatcaaatgagacacatcttcaacatgcccacatcccgtgacacaaa 51993891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 22191875 - 22191823
Alignment:
Q  151 agtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaa 203  Q
    |||| ||||||||| |||||||| || ||||||||||| ||||||||||||||    
T  22191875 agtctccaagcaagaatagaaaccttcaaaggaacctgtttatgccaaattaa 22191823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 40563633 - 40563605
Alignment:
Q  169 gaaacttttaaaggaacctgcttatgcca 197  Q
    |||||||||||||||||||||||||||||    
T  40563633 gaaacttttaaaggaacctgcttatgcca 40563605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 3 - 207
Target Start/End: Complemental strand, 7031259 - 7031055
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7031259 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctaaa 7031160  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||  |||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  7031159 atccctcgtgccaccaaattagatttagtaggtaagcgatccctcaacagacgccaagcaaggatagaaagttttaaaggaacctgtttatgccaaatta 7031060  T
Q  203 actcc 207  Q
    |||||    
T  7031059 actcc 7031055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 11203717 - 11203927
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  11203717 aggccacaatgaaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagctata 11203816  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| || |||||||||| || ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  11203817 atcccacgttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaagtatagaaacttttaaaggaacctgtttatgccaaatta 11203916  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  11203917 actccatattt 11203927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 29523987 - 29523777
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | ||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||| |||||||||||||||    
T  29523987 aggccacaatgcaccaaaaattggacaagacaagaataaatgattcacatctttaacctgcctgcatcccgttacacaaaaccgattttccacagctata 29523888  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| ||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29523887 atcccacgtgccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaatta 29523788  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  29523787 actccatattt 29523777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 12342467 - 12342258
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  12342467 aggccacaatgcaccaaaaattggacaagagaagaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagctata 12342368  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| || |||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  12342367 atcccacgttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaa-gaacctgtttatgccaaatta 12342269  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  12342268 actccatattt 12342258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 33496445 - 33496653
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||||||| ||||    
T  33496445 aggccacaatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgtccgcatcccattacacaaaaccgattttccacagatata 33496544  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| || |||||||||| || ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  33496545 atcccacgttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaatgatagaaacttttaaaggaacctgtttatgccaaatta 33496644  T
Q  203 actccatat 211  Q
    |||||||||    
T  33496645 actccatat 33496653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 36801317 - 36801107
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  36801317 aggccacaatgcaccaaaaattggacaagacaaaaataaatgatttacatcttcaacctgcccacatcccgatacacaaaaccgattttccacagatata 36801218  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    ||| ||  |||||||||||| || ||||||||||| |||||||| | |||| |||||||||||||| |||||||||| |||||||  |||||| ||||||    
T  36801217 atctcacatgccaccaaatttgatttagtaggtaaacgatccctcagcagttgccaagcaaggatataaacttttaagggaacctatttatgctaaatta 36801118  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  36801117 actccatattt 36801107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 35214615 - 35214403
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    ||||||||||| ||||||||| | ||||||||||| || |||||||||||||||||||| |||| ||||||||||||||||||| |   |||||||  ||    
T  35214615 ataggccacaatgcaccaaaaattggacaagacaagaacaaatgattcacatcttcaacatgccaacatcccgttacacaaaactgagcttccacatata 35214516  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
     ||||||| || |   |||||| || |||||||| || |||||||| ||||  |||||| |||||||||||||||||||||||||||| |||||||| ||    
T  35214515 gaatcccacgttctggcaaatttgatttagtaggcaaacgatccctcaacatccgccaaacaaggatagaaacttttaaaggaacctgtttatgccagat 35214416  T
Q  201 taactccatattt 213  Q
    |||||||||||||    
T  35214415 taactccatattt 35214403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 19890700 - 19890786
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||| |||||||| ||||  ||| | |||||||| |||||||||||||||||||| |||||||| |||||||||||||||    
T  19890700 ttagtaggtaatcgatccctcaacaaccgcaatgcaaggatggaaacttttaaaggaacctgtttatgccagattaactccatattt 19890786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 19920344 - 19920263
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatat 211  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||||||||| |||||||||||||| |||||||    
T  19920344 gtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtccatat 19920263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 2364302 - 2364384
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||||||    
T  2364302 gtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccatatt 2364384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 7312801 - 7312883
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||||||    
T  7312801 gtaggtaaccgatccctcattagtcgccaagcaaggatagatactttgagaggtacctgtttatgccaaattaagtccatatt 7312883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 34332930 - 34332848
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| ||||| || |  ||| |||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  34332930 gtaggtaatcgatctctcagaagttgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatt 34332848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 10323686 - 10323606
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccata 210  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||||    
T  10323686 gtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccata 10323606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 40930643 - 40930564
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccat 209  Q
    |||||||| | |||||| || |||||||||||||||||||| ||||| | ||||||||| ||||| |||| |||||||||    
T  40930643 gtaggtaaccaatccctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaactaactccat 40930564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 26771104 - 26771021
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||| |||||||| || || ||||||| ||| ||||| ||||| | |||| |||| |||||||| |||||||||||||||    
T  26771104 gtaggtaaacgatccctcaaaagccgccaagtaagaatagagactttaagaggagcctgtttatgccacattaactccatattt 26771021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 963281 - 963195
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||| || ||||| | ||  ||||||||||  ||||| ||||| ||||| ||||| || |||||||| ||||||||||||    
T  963281 ttagtaggtaaccggtccctcagcaaacgccaagcaaaaatagacactttcaaaggcacctgtttgtgccaaatcaactccatattt 963195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 2755864 - 2755950
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||| || ||||| | ||  ||||||||||  ||||| ||||| ||||| ||||| || |||||||| ||||||||||||    
T  2755864 ttagtaggtaaccggtccctcagcaaacgccaagcaaatatagacactttcaaaggtacctgtttgtgccaaatcaactccatattt 2755950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 7032343 - 7032421
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||| ||||||||||||| ||| | ||||||||| || |||||||  |||||||    
T  7032343 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaattttgagaggaacctgtttgtgccaaaccaactcca 7032421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 48570157 - 48570071
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||| |||||||| ||||  ||| |||||||||  |||||||||| ||| | ||| || ||| | |||||||||||||||    
T  48570157 ttagtaggtaaacgatccctcaacaaccgctaagcaaggactgaaacttttagaggtatctgtttgtgctagattaactccatattt 48570071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 48570259 - 48570202
Alignment:
Q  25 ggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaa 82  Q
    ||||||| |||||| | ||||  |||||||||||| |||||||||||||| |||||||    
T  48570259 ggacaagtcaaaaacatatgagacacatcttcaacatgcccacatcccgtgacacaaa 48570202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 34333033 - 34332989
Alignment:
Q  27 acaagacaaaaataaatgattcacatcttcaacctgcccacatcc 71  Q
    |||||||||||| |||||||| ||||||||||| | |||||||||    
T  34333033 acaagacaaaaacaaatgattaacatcttcaacgttcccacatcc 34332989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 12697711 - 12697921
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    |||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  12697711 aggccataatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagctata 12697810  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    |||||| || |||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12697811 atcccacgttccaccaaatttgatttagtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaatta 12697910  T
Q  203 actccatattt 213  Q
    | | |||||||    
T  12697911 atttcatattt 12697921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 8360998 - 8361208
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| ||||    
T  8360998 aggccacaatgcaccaaaaattggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgatacacaaaaccgattttcaacagatata 8361097  T
Q  103 atcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatta 202  Q
    || ||| ||||||||||||| || ||| ||||||| |||| ||| | |||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  8361098 attccacgtgccaccaaatttgatttactaggtaaacgattcctcagcagtcgccaaacaaggatagaaacttttaagggaacctgtttatgccaaatta 8361197  T
Q  203 actccatattt 213  Q
    |||||||||||    
T  8361198 actccatattt 8361208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 4548461 - 4548342
Alignment:
Q  3 aggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctata 102  Q
    ||||||||| ||||||||| | || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  4548461 aggccacaatgcaccaaaaattgggcaagacaaaaataaatgattcacatcttcaacctgcccgcatcccgttacacaaaaccgattttccacagctata 4548362  T
Q  103 atcccaagtgccaccaaatt 122  Q
    |||||| || ||||||||||    
T  4548361 atcccacgttccaccaaatt 4548342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 20002614 - 20002833
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccg-gttt------tcc 93  Q
    ||||||||||| ||||| |||   |||||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||| |  |      |||    
T  20002614 ataggccacaatgcaccgaaaaatggacaagacaaaaacatatgattcacatcttcaacatgcccacatcccgtgacacaaaaccgagcctccacagtcc 20002713  T
Q  94 acagctataatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttat 193  Q
    |||| | |||| ||| |  |  |||| || || ||||||||||| |||||||| ||||| |||||||||| |||||||||||||||| ||||||| ||||    
T  20002714 acagatgtaatgccacggtctgccaagttggatttagtaggtaaacgatccctcaacagccgccaagcaatgatagaaacttttaaaagaacctgtttat 20002813  T
Q  194 gccaaattaactccatattt 213  Q
    ||||||||||||||||||||    
T  20002814 gccaaattaactccatattt 20002833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 45472824 - 45472741
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45472824 gtaggtaaacgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattt 45472741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 55725801 - 55725718
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||||||||| || || |||||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||    
T  55725801 gtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagaggaacttgtttatgccaaattaactccatattt 55725718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 2822155 - 2822069
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||||||||||||||| |||| |||||||||| |||  |||||||||| ||| ||||| || ||||| |||||||||||||||    
T  2822155 ttagtaggtaagcgatccctcaacaatcgccaagcatggactgaaacttttagaggtacctgtttgtgccagattaactccatattt 2822069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 19755292 - 19755373
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatat 211  Q
    |||||||| ||||| || |  |||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||    
T  19755292 gtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatat 19755373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 19784514 - 19784433
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatat 211  Q
    |||||||| ||||| || |  |||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||    
T  19784514 gtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatat 19784433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 54483403 - 54483322
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaa 82  Q
    ||||||||||||||||||||    |||||||||||||| ||||||  |||||||||||| |||||||||||||| |||||||    
T  54483403 ataggccacaaagcaccaaagaatggacaagacaaaaacaaatgagacacatcttcaacatgcccacatcccgtgacacaaa 54483322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 7403938 - 7404021
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| ||| |||| || |||||||||||||||| |||||||    
T  7403938 gtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgaaatgaacttgtttatgccaaattaacttcatattt 7404021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 1828775 - 1828573
Alignment:
Q  10 aaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataatcccaa 109  Q
    |||||||||||||| | |||||||||||| |||||||  ||||||||||| | |||||| || |  ||||| |||||    |||| || || ||| |||     
T  1828775 aaagcaccaaaagttgcacaagacaaaaacaaatgatcaacatcttcaacattcccacacccagaaacacacaaccgcgcctccaaaggtaaaatgccac 1828676  T
Q  110 gtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccat 209  Q
    |     |||||||||  || |||||||| | ||| |  || |||| ||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||    
T  1828675 ggtttgccaaattagtttttgtaggtaacctatctcgcaatagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccat 1828576  T
Q  210 att 212  Q
    |||    
T  1828575 att 1828573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 15740246 - 15740328
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| ||||| |  || |||| ||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  15740246 gtaggtaaccgatctcgcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatt 15740328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 13271132 - 13270928
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataa 103  Q
    ||||| || ||||||||||| | ||||||||||||||||| | | |||||||| ||   ||||||||| || || || ||||| |  ||||||| || ||    
T  13271132 ggccataatgcaccaaaagttgcacaagacaaaaataaattagtaacatcttcgacaatcccacatccagtaactcataaccgctcctccacagatagaa 13271033  T
Q  104 tcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaa 203  Q
    | ||| |     ||||||||   || |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| ||||||||||||||    
T  13271032 tgccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaa 13270933  T
Q  204 ctcca 208  Q
     ||||    
T  13270932 gtcca 13270928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 47418829 - 47418909
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccata 210  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||||    
T  47418829 gtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagtccata 47418909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 23642706 - 23642628
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||    
T  23642706 gtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 23642628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 47686010 - 47685932
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| ||||| || || |||||||||||||||||||| ||||| | ||||||||| ||||| |||||||| ||||    
T  47686010 gtaggtaaccgatctctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaagtcca 47685932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 48311991 - 48312072
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaa 82  Q
    ||||||||||||||||| ||    |||||||| ||||| ||||||  |||||||||||| |||||||||||||| |||||||    
T  48311991 ataggccacaaagcaccgaagaatggacaagataaaaacaaatgagacacatcttcaacatgcccacatcccgtgacacaaa 48312072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 136457 - 136502
Alignment:
Q  154 cgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaa 199  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||    
T  136457 cgccaagcaaagatagaaactttagaaggaacctgcttatgccaaa 136502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 7403812 - 7403867
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaac 59  Q
    ||||| || |||| |||||| |||||||||||||| |||||||| |||||||||||    
T  7403812 ggccataaggcactaaaagttggacaagacaaaaacaaatgattgacatcttcaac 7403867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 11587439 - 11587384
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaac 59  Q
    |||||||||||||||||| | || ||||||||||| || |||||||||| ||||||    
T  11587439 ggccacaaagcaccaaaatttgggcaagacaaaaacaagtgattcacattttcaac 11587384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 15740120 - 15740184
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccaca 68  Q
    ||||| || |||||||||||  ||||||||||||| |||||||| ||||||| ||| | ||||||    
T  15740120 ggccataaggcaccaaaagttagacaagacaaaaacaaatgattaacatctttaacattcccaca 15740184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 14439649 - 14439857
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    ||||||||||| ||| ||||| | |||||||||||||  |||||||||||||||||||||| |||||||||||||||| |||||||   |||||||| ||    
T  14439649 ataggccacaatgcatcaaaaattggacaagacaaaac-aaatgattcacatcttcaacctacccacatcccgttacataaaaccgagcttccacagata 14439747  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
     ||||||| || | |||||||| || ||||||||||| |||||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||| ||    
T  14439748 gaatcccacgttctaccaaatttgatttagtaggtaaacgatccctcaacagtcgtcaagccaagatagaaacttttaaaggaacctgtttatgccagat 14439847  T
Q  201 taactccata 210  Q
    ||||||||||    
T  14439848 taactccata 14439857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 11000194 - 10999983
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    ||||||||||| ||||||||| | |||||||| || || |||||||||||||||||||| ||||||||| ||||||||||||||||   |||||||| ||    
T  11000194 ataggccacaatgcaccaaaaattggacaagataagaacaaatgattcacatcttcaacatgcccacattccgttacacaaaaccgagcttccacagata 11000095  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
     ||||||| || |  ||||||| || |||||||| || |||||||| ||||| | |||||||||||||||||||||||||| |||||| ||||| || ||    
T  11000094 gaatcccacgttctgccaaatttgatttagtaggcaaacgatccct-aacagccaccaagcaaggatagaaacttttaaagaaacctgtttatggcagat 10999996  T
Q  201 taactccatattt 213  Q
    |||||||||||||    
T  10999995 taactccatattt 10999983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 12645432 - 12645644
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    ||||||||||| || |||||| | || ||||||||||| |||||| ||||||||||||| |||||||| || || |||||||||||    |||| || ||    
T  12645432 ataggccacaatgcgccaaaaattgggcaagacaaaaacaaatgagtcacatcttcaacatgcccacaccctgtaacacaaaaccgagcctccaaaggta 12645531  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
     ||| |   |  |   ||||||  | || ||||||||||||||||| || || |||||||||||||| |||||||||| || |||||| |||||||||||    
T  12645532 gaattctgcgatctgtcaaattgtattttgtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagagaaacctgtttatgccaaat 12645631  T
Q  201 taactccatattt 213  Q
    |||||||||||||    
T  12645632 taactccatattt 12645644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 15917553 - 15917762
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataa 103  Q
    |||||||| || |||||||| |||||||||||||| | |||||||||||||||||| |||||||| || || ||||| |||||   ||||| ||  ||||    
T  15917553 ggccacaacgcgccaaaagttggacaagacaaaaacatatgattcacatcttcaacatgcccacaaccagtgacacacaaccgcacttccaaaggaataa 15917652  T
Q  104 tcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaa 203  Q
    | ||| |     ||||||||   || |||||||| |||||||| | ||||| ||||||||||||| | ||||| | ||||||||  |||||| |||||||    
T  15917653 taccacgatttgccaaattaacttttgtaggtaaacgatccctcagcagtccccaagcaaggatacagactttcagaggaacctatttatgcgaaattaa 15917752  T
Q  204 ctccatattt 213  Q
    ||| ||||||    
T  15917753 ctcaatattt 15917762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 41206915 - 41207124
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataa 103  Q
    ||||| || ||||||||||| ||||||||||| || |||||||| ||||||||||| ||||| ||||| || ||||| |||||    ||||  |  ||||    
T  41206915 ggccataaggcaccaaaagttggacaagacaagaacaaatgattgacatcttcaacgtgcccgcatccagtgacacacaaccgcgcctccaagggaataa 41207014  T
Q  104 tcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaa 203  Q
    | ||| |     ||||||||   || |||||||| |||||||| |  || ||||||||||||||||| ||||| | ||||||||| ||||||||||||||    
T  41207015 tgccacgatttgccaaattattttttgtaggtaaccgatccctcagaagccgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaa 41207114  T
Q  204 ctccatattt 213  Q
    ||||||||||    
T  41207115 ctccatattt 41207124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 28252745 - 28252825
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccata 210  Q
    ||||||||||||||||| || || ||||||||||| ||||| ||||||| ||| ||||| |||||||||||||| ||||||    
T  28252745 gtaggtaagcgatccctcaaaagccgccaagcaagaatagatacttttagaggtacctgtttatgccaaattaattccata 28252825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 4552194 - 4552276
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||||||||  |||||||||||||| ||||||||    
T  4552194 gtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttaagaggaacctatttatgccaaattaagtccatatt 4552276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 40176690 - 40176776
Alignment:
Q  127 ttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||||| |||||||| ||||  |||||||||||||  |||||||||| ||| ||||| || ||||| | |||||||||||||    
T  40176690 ttagtaggtaaacgatccctcaacaaccgccaagcaaggactgaaacttttagaggtacctgtttgtgccagactaactccatattt 40176776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 33516028 - 33515947
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaa 82  Q
    ||||||||||||||||||||    |||||||||||||| | ||||  |||||||||||| |||||||||| ||| |||||||    
T  33516028 ataggccacaaagcaccaaagaaaggacaagacaaaaacatatgagacacatcttcaacatgcccacatctcgtgacacaaa 33515947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 40176565 - 40176646
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaa 82  Q
    ||||||||||||||||| ||    |||||| ||||||| ||||||  |||||||||||| |||||||||||||| |||||||    
T  40176565 ataggccacaaagcaccgaagaatggacaaaacaaaaacaaatgagacacatcttcaacatgcccacatcccgtgacacaaa 40176646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 17765077 - 17764994
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    ||||||||  ||||||| || || ||||||||||| ||||| ||||| | |||| |||| |||||||| |||||||||||||||    
T  17765077 gtaggtaaatgatccctcaatagccgccaagcaagaatagagactttaagaggagcctgtttatgccatattaactccatattt 17764994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 38604489 - 38604406
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||| ||||| || |||||  |||| |||||||| |||||||||| ||| || || |||||||| |||||||||||||||    
T  38604489 gtaggtaaacgatctcttaacagcagccatgcaaggattgaaacttttagaggtacttgtttatgccagattaactccatattt 38604406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 28252640 - 28252672
Alignment:
Q  25 ggacaagacaaaaataaatgattcacatcttca 57  Q
    |||||||||||||| ||||||||||||||||||    
T  28252640 ggacaagacaaaaacaaatgattcacatcttca 28252672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 45 - 213
Target Start/End: Original strand, 18532568 - 18532736
Alignment:
Q  45 attcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataatcccaagtgccaccaaattagacttagtaggtaagcgatcc 144  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| ||| || | |||||| | || ||||||||||| ||||||    
T  18532568 attcacatcttcaacctgcccacatcccgttacacaaaaccgattttccacagatagaattccacgttctaccaaaattgatttagtaggtaaacgatcc 18532667  T
Q  145 ctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    || ||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||    
T  18532668 ctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgcgagattaactccatattt 18532736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 25619356 - 25619567
Alignment:
Q  2 taggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctat 101  Q
    |||||||||| ||||| ||| | |||||||||||||| | |||||||||||||||||| ||||||||||| || |||||||| ||||  ||||||| |      
T  25619356 taggccacaatgcaccgaaaattggacaagacaaaaacatatgattcacatcttcaacatgcccacatcctgtgacacaaaatcggtcctccacagatgc 25619455  T
Q  102 aatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaatt 201  Q
    ||| ||| |  |  |||| || || ||||||||||| || ||||| ||||  ||||||||||||||||||||||||||||||||||| |||||||| |||    
T  25619456 aatgccacgatctgccaagttggatttagtaggtaatcgttccctcaacaaccgccaagcaaggatagaaacttttaaaggaacctgtttatgccatatt 25619555  T
Q  202 aactccatattt 213  Q
    ||||||||||||    
T  25619556 aactccatattt 25619567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 37254654 - 37254866
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagcta 100  Q
    ||||||||||| ||||| ||| | |||||||||||||| | |||||||||||||||||  || |||||| |||| |||||||||||  | ||||||| ||    
T  37254654 ataggccacaatgcaccgaaaattggacaagacaaaaacatatgattcacatcttcaaaatgtccacattccgtgacacaaaaccgagtctccacagata 37254753  T
Q  101 taatcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaat 200  Q
    |||| |||    |  |||| || || ||||||||||| |||||||| ||||  |||||||||||||| ||||||||||||| |||||| |||||||| ||    
T  37254754 taatgccacaatctgccaagttggatttagtaggtaaacgatccctcaacaaccgccaagcaaggattgaaacttttaaagtaacctgtttatgccagat 37254853  T
Q  201 taactccatattt 213  Q
    |||||||||||||    
T  37254854 taactccatattt 37254866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 11277367 - 11277285
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| ||||| || || |||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  11277367 gtaggtaaccgatctctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatt 11277285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 235552 - 235469
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | | ||||||| ||||||||||||||||||||||||    
T  235552 gtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgagatgaacctgtttatgccaaattaactccatattt 235469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 17720660 - 17720738
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||| ||||||||||||||||| | |||||||||  ||||||||||||||||||    
T  17720660 gtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaactcca 17720738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 29967874 - 29968080
Alignment:
Q  4 ggccacaaagcaccaaaagtcggacaagacaaaaataaatgattcacatcttcaacctgcccacatcccgttacacaaaaccggttttccacagctataa 103  Q
    ||||| ||||||| ||||||   |||||||||||| |||||||| ||||||||||| | ||||||||| |  ||||| |||||    |||| || || ||    
T  29967874 ggccataaagcactaaaagttacacaagacaaaaacaaatgattaacatcttcaacgttcccacatccagaaacacacaaccgcgcctccaaaggtaaaa 29967973  T
Q  104 tcccaagtgccaccaaattagacttagtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaa 203  Q
    | ||| |     ||||||||   || |||||||| ||||| || || ||||  |||||||||||||| ||||| | ||||||||| ||||||||||||||    
T  29967974 tgccatggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtcctcaagcaaggatagatactttgagaggaacctgtttatgccaaattaa 29968073  T
Q  204 ctccata 210  Q
    |||||||    
T  29968074 ctccata 29968080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 47877029 - 47877091
Alignment:
Q  151 agtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatattt 213  Q
    |||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||| |||||    
T  47877029 agtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccctattt 47877091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 4938243 - 4938165
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||    
T  4938243 gtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 4938165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 37919590 - 37919650
Alignment:
Q  151 agtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatat 211  Q
    |||||||||||||||||||| ||||| | ||||||||| |||| ||||||||||| |||||    
T  37919590 agtcgccaagcaaggatagatactttgagaggaacctgtttataccaaattaacttcatat 37919650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 18530406 - 18530454
Alignment:
Q  1 ataggccacaaagcaccaaaagtcggacaagacaaaaataaatgattca 49  Q
    ||||||||||| ||||||||| | |||||||||||||| ||||||||||    
T  18530406 ataggccacaatgcaccaaaaattggacaagacaaaaacaaatgattca 18530454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 37919466 - 37919507
Alignment:
Q  27 acaagacaaaaataaatgattcacatcttcaacctgcccaca 68  Q
    ||||||||||||||||||||| ||||||||||| | ||||||    
T  37919466 acaagacaaaaataaatgattaacatcttcaacgttcccaca 37919507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 3277 - 3359
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactccatatt 212  Q
    |||||||| ||||| || || |||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  3277 gtaggtaaccgatctctcaaaagtctccaagcaaggatagaaactttaagaggaacctgtttatgccaaattaactccatatt 3359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 3174 - 3218
Alignment:
Q  27 acaagacaaaaataaatgattcacatcttcaacctgcccacatcc 71  Q
    |||||||||||| |||||||| ||||||||||| | |||||||||    
T  3174 acaagacaaaaacaaatgattaacatcttcaacgttcccacatcc 3218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 11320 - 11242
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||||||||| |||||||||||||| ||||    
T  11320 gtaggtaaccgatccctgagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagtcca 11242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 105958 - 105880
Alignment:
Q  130 gtaggtaagcgatccctaaacagtcgccaagcaaggatagaaacttttaaaggaacctgcttatgccaaattaactcca 208  Q
    |||||||| |||||||| |  |||||||||||||||||||| ||||| | ||| ||||| |||||||||||||| ||||    
T  105958 gtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagtcca 105880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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