View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8754_low_2 (Length: 339)
Name: NF8754_low_2
Description: NF8754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8754_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 447681 - 447828
Alignment:
| Q |
1 |
tctggctattctaatgagtataattttgattcttccctatgattacctaatattgaacgataaagtggttaataaaatagactgaaatctgatactaatt |
100 |
Q |
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| T |
447681 |
tctggctattctaatgagtataattttgattcttccctatgattacctaatatagaacgataaagtggttaataaaagagactgaaatctgatactaatt |
447780 |
T |
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| Q |
101 |
gaagatagtaaaaacacaaaaaaggaagagtttgaattgtgttgacaa |
148 |
Q |
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| T |
447781 |
gaagatagtaaaaacacaaaaaaggaagagtttgaattgtgttgacaa |
447828 |
T |
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Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 239 - 330
Target Start/End: Original strand, 447876 - 447967
Alignment:
| Q |
239 |
ttttataattgttgctacatctaatcctccctttacagagagatttcctcattttcgtcaaggaattaatccattcaaatattaagtattat |
330 |
Q |
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| T |
447876 |
ttttataattgttgctacatctaatcctccctttacagagagatttcctcattttcgtcaaggaattaatccattcaaatattaagtattat |
447967 |
T |
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