View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8754_low_3 (Length: 300)
Name: NF8754_low_3
Description: NF8754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8754_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 36859927 - 36860187
Alignment:
| Q |
17 |
attattctaattagaacatcatctttcatccataattcacgttgtccacatcatattaataataatgtctgtcctaggtgctcttttctttccctacctt |
116 |
Q |
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| T |
36859927 |
attattctaattagaacatcatctttcatccataattcactttgtccacatcatattaataataatttctgtcctaggtgctcttttctttccctacctt |
36860026 |
T |
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| Q |
117 |
cccaaatcacaggcttaacttgcacacatgttcataacatggttgttttgcgcatgttgtgttagaatcttattggggtaatgtaacaattaacaaacga |
216 |
Q |
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| T |
36860027 |
cccaaatcacaggcttaacttgcacacatgctcacaacatggttgttttgctcatgttgtgttagaatcttatcggtgtaat-------ataacaaacaa |
36860119 |
T |
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| Q |
217 |
cattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagcaattaatgttgttta |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36860120 |
cattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagcaattaatgttgttta |
36860187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 73 - 283
Target Start/End: Complemental strand, 35029842 - 35029642
Alignment:
| Q |
73 |
taataataatgtctgtcctaggtgctcttttctttccctaccttcccaaatcacaggcttaacttgcacacatgttcataacatggttgttttgcgcatg |
172 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||| |||| |
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| T |
35029842 |
taataataatgtctgtcataggt--tcttttctttccctaccttcccaaatcaccggcttaact-gcacacatgttcacaacatggctgttttgatcatg |
35029746 |
T |
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| Q |
173 |
ttgtgttagaatcttattggggtaatgtaacaattaacaaacgacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagcaat |
272 |
Q |
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| T |
35029745 |
ttgtgttagaatcttattggtgtaat-------ataacaaacaacattatttgggtcagtgtccactctttttcttccaccttaatttgtttagagctat |
35029653 |
T |
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| Q |
273 |
taatgttgttt |
283 |
Q |
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||||||||||| |
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| T |
35029652 |
taatgttgttt |
35029642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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