View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8754_low_5 (Length: 247)

Name: NF8754_low_5
Description: NF8754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8754_low_5
NF8754_low_5
[»] chr4 (3 HSPs)
chr4 (70-150)||(31407017-31407099)
chr4 (148-228)||(31407140-31407220)
chr4 (1-39)||(31406981-31407019)
[»] chr1 (1 HSPs)
chr1 (179-224)||(47481273-47481318)


Alignment Details
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 31407017 - 31407099
Alignment:
Q  70 ttagtggtattttactatttgaaaattaaacgaccaaagtctagcgcaaatgattggtgtgcaatg--tgtgagtgttgtaaa 150  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||  |||||||||||||||    
T  31407017 ttagtggtatttaactatttgaaaattaaacgatcaaagtctagcgcaaatgattagtgcgcaatgtatgtgagtgttgtaaa 31407099  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 228
Target Start/End: Original strand, 31407140 - 31407220
Alignment:
Q  148 aaactatttgaatatgaaaa-ggtgaaattttttaccattcttggagcaccatcaatctcagcaacctccatgccagttact 228  Q
    |||||||||||| ||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31407140 aaactatttgaaaatgaaaaaggtgaaaaattt-accattcttggagcaccatcaatctcagcaacctccatgccagttact 31407220  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31406981 - 31407019
Alignment:
Q  1 catatcagtatgacactagccatataaaaatgtctctta 39  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  31406981 catatcagtatgacactagccatatcaaaatgtctctta 31407019  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 47481273 - 47481318
Alignment:
Q  179 ttaccattcttggagcaccatcaatctcagcaacctccatgccagt 224  Q
    ||||||||||||| ||||||||||| |||||||| ||||| |||||    
T  47481273 ttaccattcttggggcaccatcaatttcagcaacttccataccagt 47481318  T

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