View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8754_low_6 (Length: 241)
Name: NF8754_low_6
Description: NF8754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8754_low_6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 46936688 - 46936910
Alignment:
| Q |
19 |
caataccccgggaacaaagccagcaccaatcccttgaatcttgtgtggacctagacgtttatcatggcaatttgcacatcagcaacagcttcgaaagtaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46936688 |
caataccccgggaacaaagccagcaccaatcccttgaatcttgtgtggacctagacgtttatcatggcaatttgcacatcagcaacagcttcgaaagtaa |
46936787 |
T |
|
| Q |
119 |
gttcttatttcaactctaaggaacaaaacagtgttataactaaccaggctttcctccggacagtacaggactttcgactggctccaccccatacagctgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46936788 |
gttcttatttcaactctaaggaacaaaacagtgttataactaaccaggctttcctccggacagtacaggactttcgactggctccaccccatacagctgc |
46936887 |
T |
|
| Q |
219 |
ataatataaaaattgaaacaaaa |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46936888 |
ataatataaaaattgaaacaaaa |
46936910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 25125582 - 25125430
Alignment:
| Q |
19 |
caataccccgggaacaaagccagcaccaatcccttgaatcttgtgtggacctagacgtttatcatggcaatttgcacatcagcaacagcttcgaaagtaa |
118 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25125582 |
caataccccggtaacaaaaccagcaccaatcccttgaatcttgtgtggtcgtagacgtttgtcatggcaatttgcacatcagcaacagcttcaaaagtaa |
25125483 |
T |
|
| Q |
119 |
gttcttatttcaactctaaggaacaaaacagtgttataactaaccaggctttc |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25125482 |
gttcttatttcaactctaaggaacaaaacagtgttataactagccaggctttc |
25125430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 25125434 - 25125382
Alignment:
| Q |
189 |
ctttcgactggctccaccccatacagctgcataatataaaaattgaaacaaaa |
241 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
25125434 |
ctttcaactggctccacgccataaagctgcataatataaaaattgaaataaaa |
25125382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 863404 - 863366
Alignment:
| Q |
32 |
acaaagccagcaccaatcccttgaatcttgtgtggacct |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
863404 |
acaaagccagcaccaatcccttgaatcttgtgaggacct |
863366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University