View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8755_high_12 (Length: 397)
Name: NF8755_high_12
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 9192688 - 9192444
Alignment:
| Q |
19 |
atatagcatttaaaacactcgactaccaaggcataaagaagggacagagcattaaaatccatagtattagctccatgctgttttttaccttattttaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9192688 |
atatagcatttaaaacactcgactaccaaggcataaagaagggacagagcattaaaatccatagtattagctccatgctgttttttaccttattttaacc |
9192589 |
T |
|
| Q |
119 |
cataacgccatgccctttaggcattgagttttaatgttgcatctctttgagaaactgcatggtttctaggttgtttaaaagtcaaatttaaccctatagt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9192588 |
cataacgccatgccctttaggcattgagttttaatgttgcatctctttgagaaactgcatggtttctaggttgcttaaaagtcaaatttaaccctatagt |
9192489 |
T |
|
| Q |
219 |
atgggggtattagtgtgtgataattaagggcagttttggtttgat |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9192488 |
atgggggtattagtgtgtgataattaagggcagttttggtttgat |
9192444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 9192367 - 9192321
Alignment:
| Q |
340 |
cagagaaattagcagaaagagtggaaaatattaaatgagggaatctc |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9192367 |
cagagaaattagcagaaagagtggaaaatattaaatgagggaatctc |
9192321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University