View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_high_14 (Length: 376)
Name: NF8755_high_14
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 65 - 356
Target Start/End: Complemental strand, 488545 - 488254
Alignment:
| Q |
65 |
tttatgtgacataccaacacgaccaagggatatggcttcagttccaagcaacatgaaatcattgcaatgttccatgctagcaatgacaccattaccattg |
164 |
Q |
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| T |
488545 |
tttatgtgacataccaacacgaccaagggatatggcttcagttccaagcaacatgaaatcattgcaatgttccatgctagcaatgacaccattaccattg |
488446 |
T |
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| Q |
165 |
aaatgtcttttcactgaagttgagagagctttgtaatatgctttggccaaatcaactcttccaccatacttctcacccaccatctctagcaactgattac |
264 |
Q |
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| T |
488445 |
aaatgttttttcactgaagttgagagagctttgtaatatgctttggccaaatcaactcttccaccatacttctcacccaccatctctagcaactgattac |
488346 |
T |
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| Q |
265 |
aaattaaacatcaatatatgtcaaaactaaatatatatgtagaaactaagaaaaatgttgaaacttattgaattgaatatatctcatgaata |
356 |
Q |
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| T |
488345 |
aaattaaacatcaatatatgtcaaaactaaatatatatgtagaaactaagaaaaatgttgaaacttattgaattgaatatatctcatgaata |
488254 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 43638210 - 43638307
Alignment:
| Q |
73 |
acataccaacacgaccaagggatatggcttcagttccaagcaacatgaaatcattgcaatgttccatgctagcaatgacaccattaccattgaaatgt |
170 |
Q |
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| T |
43638210 |
acataccaactcgtccaagtgaaatggtttctgtaccaaggaacatgaaatcgttgcattgttgcatactggaaatgacaccattgcctttgaaatgt |
43638307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 34697240 - 34697393
Alignment:
| Q |
81 |
acacgaccaagggatatggcttcagttccaagcaacatgaaatcattgcaatgttccatgctagcaatgacaccattaccattgaaatgtcttttcactg |
180 |
Q |
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||||| |||||||| |||||||| || ||||| | | ||| || |||||||| |||||||| ||||| || ||||| |||||||||||| | ||||||| |
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| T |
34697240 |
acacgtccaagggaaatggcttctgtgccaaggagaaagaagtcgttgcaatgctccatgctggcaataactccattgccattgaaatgtttcttcactg |
34697339 |
T |
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| Q |
181 |
aagttgagagagctttgtaatatgctttggccaaatcaactcttccaccatact |
234 |
Q |
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| T |
34697340 |
atgaggtcagtgctttgtaataggctttagcaagctcaacacgtccaccatact |
34697393 |
T |
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