View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8755_high_24 (Length: 250)

Name: NF8755_high_24
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8755_high_24
NF8755_high_24
[»] chr6 (39 HSPs)
chr6 (61-165)||(26805215-26805322)
chr6 (60-165)||(27674915-27675023)
chr6 (127-237)||(26851152-26851262)
chr6 (1-165)||(26961825-26961992)
chr6 (188-240)||(28794889-28794941)
chr6 (189-238)||(28788867-28788916)
chr6 (189-237)||(25076334-25076382)
chr6 (189-237)||(27608749-27608797)
chr6 (189-236)||(26864092-26864139)
chr6 (130-233)||(26952264-26952367)
chr6 (188-239)||(27590611-27590662)
chr6 (189-238)||(26826305-26826354)
chr6 (189-238)||(26979892-26979941)
chr6 (189-238)||(27681466-27681515)
chr6 (189-238)||(31287058-31287107)
chr6 (50-165)||(25485704-25485822)
chr6 (43-95)||(28795196-28795248)
chr6 (197-236)||(29828489-29828528)
chr6 (188-238)||(26961593-26961643)
chr6 (127-165)||(27602134-27602172)
chr6 (127-165)||(27608531-27608569)
chr6 (188-238)||(27703845-27703895)
chr6 (127-165)||(27715911-27715949)
chr6 (189-238)||(27662845-27662894)
chr6 (188-233)||(27675205-27675250)
chr6 (189-238)||(27716129-27716178)
chr6 (188-240)||(27696219-27696271)
chr6 (189-236)||(26886593-26886640)
chr6 (57-112)||(27590464-27590519)
chr6 (127-165)||(26638116-26638154)
chr6 (108-165)||(26658696-26658756)
chr6 (127-165)||(26744082-26744120)
chr6 (108-165)||(26764667-26764727)
chr6 (127-165)||(27681671-27681709)
chr6 (189-238)||(25513357-25513406)
chr6 (188-241)||(26804995-26805048)
chr6 (50-94)||(25513663-25513707)
chr6 (50-94)||(26145785-26145829)
chr6 (43-95)||(28789172-28789224)
[»] scaffold0419 (2 HSPs)
scaffold0419 (189-236)||(10019-10066)
scaffold0419 (43-165)||(10249-10374)
[»] scaffold0277 (4 HSPs)
scaffold0277 (189-236)||(2320-2367)
scaffold0277 (189-238)||(11283-11332)
scaffold0277 (43-95)||(2012-2064)
scaffold0277 (43-95)||(10975-11027)
[»] chr4 (13 HSPs)
chr4 (197-236)||(18682392-18682431)
chr4 (197-236)||(18726668-18726707)
chr4 (197-236)||(18687288-18687327)
chr4 (197-236)||(18697076-18697115)
chr4 (197-236)||(18721747-18721786)
chr4 (198-236)||(18653152-18653190)
chr4 (197-236)||(18677233-18677272)
chr4 (122-165)||(18682168-18682211)
chr4 (122-165)||(18726444-18726487)
chr4 (122-161)||(18728947-18728986)
chr4 (127-165)||(18687065-18687103)
chr4 (198-236)||(18729170-18729208)
chr4 (122-163)||(18721525-18721566)
[»] chr1 (4 HSPs)
chr1 (189-236)||(28125322-28125369)
chr1 (197-236)||(265968-266007)
chr1 (189-236)||(28130353-28130400)
chr1 (188-233)||(26138421-26138466)
[»] scaffold0349 (2 HSPs)
scaffold0349 (127-165)||(15996-16034)
scaffold0349 (189-238)||(15767-15816)
[»] chr8 (3 HSPs)
chr8 (197-238)||(22023759-22023800)
chr8 (43-102)||(22024056-22024115)
chr8 (128-163)||(29271251-29271286)
[»] chr2 (1 HSPs)
chr2 (197-234)||(17990856-17990893)
[»] scaffold0012 (1 HSPs)
scaffold0012 (199-232)||(199500-199533)


Alignment Details
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 26805322 - 26805215
Alignment:
Q  61 agatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaatcaagatgcttaaga---tgacattcactaaagcactcaggaagaattt 157  Q
    ||||| ||||||| || |||||||||||| ||||||||||||| | ||||||||||||||||||||   |||||||||||||  ||||||||||||||||    
T  26805322 agattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattt 26805223  T
Q  158 tgaaattg 165  Q
    ||||||||    
T  26805222 tgaaattg 26805215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 27674915 - 27675023
Alignment:
Q  60 aagatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaatcaagatgcttaagatg---acattcactaaagcactcaggaagaatt 156  Q
    |||||||||||||| || |||||||||||| ||||| | ||||| |  |||| ||||||||||||||||   ||||||||||| ||||||||||||||||    
T  27674915 aagatttggtggaatccctctaatttcctcaagagaagagcagtaatgcaaaccaagatgcttaagatggtgacattcactaaggcactcaggaagaatt 27675014  T
Q  157 ttgaaattg 165  Q
    |||||||||    
T  27675015 ttgaaattg 27675023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 26851262 - 26851152
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattgacgcttgttattcttaacacaccaagttcattgagattttgaaatgaaaatggcaattctc 226  Q
    ||||||||||||| |||||| ||||||||||| ||||||||   || ||| |||||   || ||||||| ||||||||| ||||||| ||||||||||||    
T  26851262 tgacattcactaaggcactcgggaagaatttttaaattgacaaatgatatgcttaagtgacgaagttcactgagatttttaaatgaagatggcaattctc 26851163  T
Q  227 ttatggaagta 237  Q
     ||||||||||    
T  26851162 ctatggaagta 26851152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 26961992 - 26961825
Alignment:
Q  1 aatagccttcttctagtttccaaactcagtgattcaca-atcaattgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagagatgtg 99  Q
    ||||||||||||||| |||||||||||| |||||||||  |||| ||| ||||| | | ||||||||||||||| || |||||||||||| ||| |  ||    
T  26961992 aatagccttcttctactttccaaactcaatgattcacatctcaa-tgcagaaagccgtccaagatttggtggaatccctctaatttcctcaagaaacttg 26961894  T
Q  100 cagtcaaacaaatcaagatgcttaaga---tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||  |||  |||| | |  ||||   ||||||||||||| |||||| ||||||||||||||||||    
T  26961893 cagtcatccaacacaagctccccaagacggtgacattcactaaggcactcgggaagaattttgaaattg 26961825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 28794941 - 28794889
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtataa 240  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  28794941 caagttcattgagattttgaaatgaagatggcaattctcctatggaagtataa 28794889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 28788916 - 28788867
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  28788916 aagttcactgagattttgaaatgaagatggcaattctcttatggaagtat 28788867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 25076382 - 25076334
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagta 237  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  25076382 aagttcactgagattttgaaatgaaaatggcaattctcctatggaagta 25076334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 27608749 - 27608797
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagta 237  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  27608749 aagttcactgagattttgaaatgaaaatggcagttctcttatggaagta 27608797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 26864139 - 26864092
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  26864139 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagt 26864092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 26952367 - 26952264
Alignment:
Q  130 cattcactaaagcactcaggaagaattttgaaattgacgcttgttattcttaacacaccaagttcattgagattttgaaatgaaaatggcaattctctta 229  Q
    |||||||||| |||||| |||||||||||||||||| | ||   |||| ||||   || ||||||| ||||||||  |||||||||||||||||||| ||    
T  26952367 cattcactaaggcactcgggaagaattttgaaattgtcactaaatattattaagcgacgaagttcactgagatttccaaatgaaaatggcaattctccta 26952268  T
Q  230 tgga 233  Q
    ||||    
T  26952267 tgga 26952264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 27590611 - 27590662
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtata 239  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  27590611 caagttcactgagattttgaaatgaagatggcaattctcgtatggaagtata 27590662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 26826354 - 26826305
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||||||    
T  26826354 aagttcattgagatttcgaaatgaagatggcaattctcctatggaagtat 26826305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 26979941 - 26979892
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  26979941 aagttcactgagatattgaaatgaaaatggcaattctcctatggaagtat 26979892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 27681515 - 27681466
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| |||||||||||||||||||||||| ||||| |||||||||||    
T  27681515 aagttcactgagattttgaaatgaaaatggcagttctcctatggaagtat 27681466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 31287107 - 31287058
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  31287107 aagttcactgagattttgaaatgaagatggcaattctcctatggaagtat 31287058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 25485822 - 25485704
Alignment:
Q  50 aaagactttcaagatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaatcaagatgcttaaga---tgacattcactaaagcactc 146  Q
    |||| ||||||||||||||||||| || |||||||||||| ||||   |||| |    ||||| |||||||||||||   |||||||||| || ||||||    
T  25485822 aaagcctttcaagatttggtggaatccctctaatttcctcaagagccttgcacttcttcaaataaagatgcttaagacggtgacattcaccaaggcactc 25485723  T
Q  147 aggaagaattttgaaattg 165  Q
     ||||||||| ||||||||    
T  25485722 gggaagaattgtgaaattg 25485704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 28795248 - 28795196
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagaga 95  Q
    ||||| ||||| ||||||||||||||||||| || ||||||||||||||||||    
T  28795248 attgcagaaagcctttcaagatttggtggaatccctctaatttcctcgagaga 28795196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 29828528 - 29828489
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  29828528 tgagattttgaaatgaaaatggcaattcttttatggaagt 29828489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 26961643 - 26961593
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    |||||||| |||||| ||||||||||||||| ||||||| |||||||||||    
T  26961643 caagttcactgagatattgaaatgaaaatggaaattctcctatggaagtat 26961593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 27602134 - 27602172
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  27602134 tgacattcactaaggcactcaggaagaattttgaaattg 27602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 27608531 - 27608569
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  27608531 tgacattcactaaggcactcaggaagaattttgaaattg 27608569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 27703845 - 27703895
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    |||||||| |||||||||||||||||||||||| ||||| ||| |||||||    
T  27703845 caagttcactgagattttgaaatgaaaatggcagttctcctatagaagtat 27703895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 27715911 - 27715949
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  27715911 tgacattcactaaggcactcaggaagaattttgaaattg 27715949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 27662845 - 27662894
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||||||||||||| |||||||||||||| ||||  |||||||||||    
T  27662845 aagttcattgagatttttaaatgaaaatggcatttcttctatggaagtat 27662894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 27675205 - 27675250
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatgga 233  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||||    
T  27675205 caagttcactgagattttgaaatgaagatggcaattctcctatgga 27675250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 27716129 - 27716178
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| | |||||||||||||||||||||| ||||| |||||||||||    
T  27716129 aagttcactaagattttgaaatgaaaatggcagttctcctatggaagtat 27716178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 27696219 - 27696271
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtataa 240  Q
    |||||||| |||||||||||||||||||||||| || || ||||||| |||||    
T  27696219 caagttcactgagattttgaaatgaaaatggcagttttcctatggaaatataa 27696271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 26886640 - 26886593
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||| ||||||||| |||||||||||||||| ||| |||||||||    
T  26886640 aagttcactgagattttcaaatgaaaatggcaatcctcctatggaagt 26886593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 27590464 - 27590519
Alignment:
Q  57 ttcaagatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaat 112  Q
    ||||||||||||||||| || |||||||||||| |||||| |||| ||| ||||||    
T  27590464 ttcaagatttggtggaatccctctaatttcctcaagagatttgcaatcatacaaat 27590519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 26638154 - 26638116
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  26638154 tgacatacactaaggcactcaggaagaattttgaaattg 26638116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 26658756 - 26658696
Alignment:
Q  108 caaatcaagatgcttaaga---tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||| |||||||||||||   ||||||||||||| |||||| || |||||||||||||||    
T  26658756 caaataaagatgcttaagaaggtgacattcactaaggcactcgggtagaattttgaaattg 26658696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 26744120 - 26744082
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  26744120 tgacatacactaaggcactcaggaagaattttgaaattg 26744082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 26764727 - 26764667
Alignment:
Q  108 caaatcaagatgcttaaga---tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||| |||||||||||||   ||||||||||||| |||||| || |||||||||||||||    
T  26764727 caaataaagatgcttaagaaggtgacattcactaaggcactcgggtagaattttgaaattg 26764667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 27681709 - 27681671
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||||||||| || |||||||||||||||||||||||||    
T  27681709 tgacattcacgaaggcactcaggaagaattttgaaattg 27681671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 25513406 - 25513357
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| ||| ||||||||||||| |||||||||||  |||||||||||    
T  25513406 aagttcactgaaattttgaaatgaagatggcaattcttctatggaagtat 25513357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 26805048 - 26804995
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtataat 241  Q
    |||||||| | ||||||||||||||| || ||||||||| ||||| ||||||||    
T  26805048 caagttcactcagattttgaaatgaagatagcaattctcctatgggagtataat 26804995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 25513707 - 25513663
Alignment:
Q  50 aaagactttcaagatttggtggaaaccatctaatttcctcgagag 94  Q
    |||| ||||||||||||||||||| || |||||||||||| ||||    
T  25513707 aaagcctttcaagatttggtggaatccctctaatttcctcaagag 25513663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 26145829 - 26145785
Alignment:
Q  50 aaagactttcaagatttggtggaaaccatctaatttcctcgagag 94  Q
    |||| ||||||||||||||||||| || |||||||||||| ||||    
T  26145829 aaagcctttcaagatttggtggaatccctctaatttcctcaagag 26145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 28789224 - 28789172
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagaga 95  Q
    ||||| ||||| ||| ||||||||||||||| || |||||||||||| |||||    
T  28789224 attgcagaaagccttgcaagatttggtggaatccctctaatttcctccagaga 28789172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 10066 - 10019
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10066 aagttcattgagattttgaaatgaagatggcaattctcttatggaagt 10019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 10374 - 10249
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaatcaagatgcttaaga---tgacattcactaa 139  Q
    ||||| ||||| |||||||||||||||| || || |||||||||||| |||||  |||||| |  |||   ||| |  ||||||   |||||||||||||    
T  10374 attgcagaaagcctttcaagatttggtgcaatccctctaatttcctccagagacttgcagttatccaatataaggttattaagaaggtgacattcactaa 10275  T
Q  140 agcactcaggaagaattttgaaattg 165  Q
     ||||||||||| || ||||||||||    
T  10274 ggcactcaggaataagtttgaaattg 10249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 2320 - 2367
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2320 aagttcattgagattttgaaatgaagatggcaattctcttatggaagt 2367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 11283 - 11332
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  11283 aagttcactgagattttgaaatgaagatggcaattctcttatggaagtat 11332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 2012 - 2064
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagaga 95  Q
    ||||| |||||  |||||||||||||||||| || |||||||||||| |||||    
T  2012 attgcagaaagcatttcaagatttggtggaatccctctaatttcctccagaga 2064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 10975 - 11027
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagaga 95  Q
    ||||| ||||| ||| ||||||||||||||| || |||||||||||| |||||    
T  10975 attgcagaaagccttgcaagatttggtggaatccctctaatttcctccagaga 11027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18682392 - 18682431
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18682392 tgagattttgaaatgaaaatggcaattctcttatggaagt 18682431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18726668 - 18726707
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18726668 tgagattttgaaatgaaaatggcaattctcttatggaagt 18726707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18687288 - 18687327
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18687288 tgagattttgaaatgaaaatggcaattctcttgtggaagt 18687327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18697076 - 18697115
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18697076 tgagattttgaaatgaaaatggcaattctcttgtggaagt 18697115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18721747 - 18721786
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18721747 tgagattttgaaatgaaaatggcaattctcttgtggaagt 18721786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 18653152 - 18653190
Alignment:
Q  198 gagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  18653152 gagattttgaaatgaaaatggcaattctcttgtggaagt 18653190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18677233 - 18677272
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  18677233 tgagattttgaaatgaaaatggcaattctgttgtggaagt 18677272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 18682168 - 18682211
Alignment:
Q  122 taagatgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||    
T  18682168 taaggtgacattcactaaggcactcgggaagaattttgaaattg 18682211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 18726444 - 18726487
Alignment:
Q  122 taagatgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||    
T  18726444 taaggtgacattcactaaggcactcgggaagaattttgaaattg 18726487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 18728947 - 18728986
Alignment:
Q  122 taagatgacattcactaaagcactcaggaagaattttgaa 161  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  18728947 taaggtgacattcactaaggcactcaggaagaattttgaa 18728986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 18687065 - 18687103
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  18687065 tgacattcactaaggcactcgggaagaattttgaaattg 18687103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 18729170 - 18729208
Alignment:
Q  198 gagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  18729170 gagatattgaaatgaaaatggcaattctcttgtggaagt 18729208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 18721525 - 18721566
Alignment:
Q  122 taagatgacattcactaaagcactcaggaagaattttgaaat 163  Q
    |||| ||||||||| ||| |||||||||||||||||||||||    
T  18721525 taaggtgacattcattaaggcactcaggaagaattttgaaat 18721566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 28125322 - 28125369
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||    
T  28125322 aagttcactgagattttgaaatgaaaatggtaattctcttatggaagt 28125369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 265968 - 266007
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  265968 tgagattttgaaatgaagatggcaattctcttatggaagt 266007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 28130353 - 28130400
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||| | |||||||||||||||||||| |||||||||||||||||    
T  28130353 aagttcacttagattttgaaatgaaaatggtaattctcttatggaagt 28130400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 26138466 - 26138421
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatgga 233  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||    
T  26138466 caagttcactgaaattttgaaatgaaaatggcaattctcctatgga 26138421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 16034 - 15996
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  16034 tgacattcactaaggcactcaggaagaattttgaaattg 15996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 15816 - 15767
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| | |||||||||||||||||||||| ||||| |||||||||||    
T  15816 aagttcactaagattttgaaatgaaaatggcagttctcctatggaagtat 15767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 22023800 - 22023759
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  22023800 tgagattttgaaaagaagatggcaattctcttatggaagtat 22023759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 22024115 - 22024056
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagagatgtgcag 102  Q
    ||||| ||||| ||||||||||||||||||| || |||||||||||| | |||| |||||    
T  22024115 attgcagaaagcctttcaagatttggtggaatccctctaatttcctcaacagatttgcag 22024056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 29271251 - 29271286
Alignment:
Q  128 gacattcactaaagcactcaggaagaattttgaaat 163  Q
    |||||||||||| |||||||||||||||||||||||    
T  29271251 gacattcactaaggcactcaggaagaattttgaaat 29271286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 17990856 - 17990893
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaa 234  Q
    |||||||||||||||||||||||||||||| |||||||    
T  17990856 tgagattttgaaatgaaaatggcaattctcctatggaa 17990893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 199500 - 199533
Alignment:
Q  199 agattttgaaatgaaaatggcaattctcttatgg 232  Q
    ||||||||||||||||||||||||||| ||||||    
T  199500 agattttgaaatgaaaatggcaattcttttatgg 199533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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