View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_high_27 (Length: 241)
Name: NF8755_high_27
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4658345 - 4658486
Alignment:
| Q |
1 |
ggtttccttgttaatcaatgtattttactgactaaaactctcgtgtttatcggtttcgaaggattcattgggttttgttgaattactactctttctcatc |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4658345 |
ggtttccatgttaatcaatgtattttactgactaaaactctcgtgtttatcggtttcgaaggattcattgggttttgtggaattactactctttctcatc |
4658444 |
T |
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| Q |
101 |
attacattggtcagtttttcggccgtcttaccgctaatgccg |
142 |
Q |
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| T |
4658445 |
attacattggtcagtttttcggccgtcttaccgctaatgccg |
4658486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 1037342 - 1037203
Alignment:
| Q |
1 |
ggtttccttgttaatcaatgtattttactgactaaaa-ctctcgtgtttatcggtttcgaaggattcattgggttttgttgaattactactctttctcat |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| |||||| |
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| T |
1037342 |
ggtttccttgttaatcaatgtattttgctgactaaaaactctcgtgtttatcggtttcgaaggattcattgagttttgtggaattaccactc--tctcat |
1037245 |
T |
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| Q |
100 |
cattacattggtcagtttttcggccgtcttaccgctaatgcc |
141 |
Q |
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| T |
1037244 |
cattacattggtcagtttttcggccgtctttccgctaatgcc |
1037203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 1044248 - 1044109
Alignment:
| Q |
1 |
ggtttccttgttaatcaatgtattttactgactaaaa-ctctcgtgtttatcggtttcgaaggattcattgggttttgttgaattactactctttctcat |
99 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| |||| |||||| |
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| T |
1044248 |
ggtttccttgttaatcaatgtattttgctgactaaaaactctcgtgtttatcggtttcgaaggattcattgagttttgtggaattaccactc--tctcat |
1044151 |
T |
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| Q |
100 |
cattacattggtcagtttttcggccgtcttaccgctaatgcc |
141 |
Q |
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| T |
1044150 |
cattacattggtcagtttttcggccgtctttccgctaatgcc |
1044109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 1037171 - 1037125
Alignment:
| Q |
176 |
gcatcctttcttaaaaaacacattggatgccgttccaatccaacccc |
222 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1037171 |
gcatcctttcttaaaaaacacattggatgccgctccaatccaacccc |
1037125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 1044077 - 1044031
Alignment:
| Q |
176 |
gcatcctttcttaaaaaacacattggatgccgttccaatccaacccc |
222 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1044077 |
gcatcctttcttaaaaaacacattggatgccgctccaatccaacccc |
1044031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 4658520 - 4658566
Alignment:
| Q |
176 |
gcatcctttcttaaaaaacacattggatgccgttccaatccaacccc |
222 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4658520 |
gcattctttcttaaaaaacacattggatgccgttccaatccaacccc |
4658566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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