View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8755_low_1 (Length: 637)
Name: NF8755_low_1
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 11 - 621
Target Start/End: Original strand, 38237097 - 38237706
Alignment:
| Q |
11 |
gattattctcattaattgatagaaaagggtttttattttaaaaaagatattcccaatttttaaaaattgattcgatattgttagggctctataatctata |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38237097 |
gattattctcattaattgatagaaaagggttttgattttaaaaaagatatttccaatttttaaaaattgattcgatattgttagggctctataatctata |
38237196 |
T |
|
| Q |
111 |
tatacatgcatctcaaaacaacctaaagcaactcagaaaaaacactttgtttcacagttccatcacctcttccaattgttannnnnnnnnnnnnnnnnnc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38237197 |
tatacatgcatctcaaaacaacctaaagcaactcagaaaaaacactttgtttcacagttccatcacctcttccaattgttattttgctttttgttttttc |
38237296 |
T |
|
| Q |
211 |
tattcctcctttttacaatccctccaccatcttccactagatttctttgtttttcatcattctcaatttagaagtttctcaagacaatattgcttttgag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
38237297 |
tattcctcctttttacaatccctccaccatcttccactagatttctttgtttttcatcattctcaacatggaagtttctcaagacaatattgcttttgag |
38237396 |
T |
|
| Q |
311 |
atattttcttggctaccagcaaaaagcatttgcaagctcaaattaacttgcaactcatcctcccagtttttggaagaaacacttttcaaaacaaagcagg |
410 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
38237397 |
atattttcttggctaccgacaaaaagcatttgcaagctcaaatcaacttgcaactcatcctcccagttttcggaagaaatacttttcaaaacaaagcagg |
38237496 |
T |
|
| Q |
411 |
cacaaaatatgtttgggagggatgacacatgcttcttcattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagttacactctttacc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38237497 |
cacaaaatatgtttgggagggatgacacatgcttcttcattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagttacactctttacc |
38237596 |
T |
|
| Q |
511 |
tcaaaaccgacaatcttctgatgcccctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtca |
610 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38237597 |
tcaaaaccgacaatcttctggtgcccctaacgaagctttgagtttcctatcaaattcagtttgtgtctc-agcttctagtaatggtctagttgttggtca |
38237695 |
T |
|
| Q |
611 |
caccattaatg |
621 |
Q |
| |
|
||||||||||| |
|
|
| T |
38237696 |
caccattaatg |
38237706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 107 - 621
Target Start/End: Original strand, 38253662 - 38254160
Alignment:
| Q |
107 |
tatatatacatgcatctcaaaacaacctaaagcaactcagaaaaaacactttgtttcacagttccatcacctcttccaattgttannnnnnnnnnnnnnn |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38253662 |
tatatatacatgcatctcaaaacaacctaaagcaactcagaaaaaacactttgtttcacagttccatcacctcttccaattgttattttgctttttgttt |
38253761 |
T |
|
| Q |
207 |
nnnctattcctcctttttacaatccctccaccatcttccactagatttctttgtttttcatcattctcaatttagaagtttctcaagacaatattgcttt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
38253762 |
tttctattcctcctttttacaatccctccaccatcttccactagatttctttgtttttcatcattctcaacatggaagtttctcaagaaaatattgcttt |
38253861 |
T |
|
| Q |
307 |
tgagatattttcttggctaccagcaaaaagcatttgcaagctcaaattaacttgcaactcatcctcccagtttttggaagaaacacttttcaaaacaaag |
406 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38253862 |
tgagatattttcttggctaccggcaaaaggcatttgcaagctcaaatcaacttgcaattcatcctcccagttttcggaagaaacacttttcaaaacaaag |
38253961 |
T |
|
| Q |
407 |
caggcacaaaatatgtttgggagggatgacacatgcttcttcattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagttacactctt |
506 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
38253962 |
caggcacataatatgtttgggaggggtgacacatgcttcttcattcttcaacccgatcaaataggtcgaagttatactgaaatagtagagttacattctt |
38254061 |
T |
|
| Q |
507 |
tacctcaaaaccgacaatcttctgatgcccctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttg |
606 |
Q |
| |
|
||| |||||| |||||||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
38254062 |
tac---------------cttctggtgcccctaacaaagctttgagtttcctatcaaattcagtttctgtct-tagcttctagtaatggtctagttgttg |
38254145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 299 - 621
Target Start/End: Original strand, 38248725 - 38249043
Alignment:
| Q |
299 |
attgcttttgagatattttcttggctaccagcaaaaagcatttgcaagctcaaattaacttgcaactcatcctcccagtttttggaagaaacacttttca |
398 |
Q |
| |
|
|||||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| || | |||| ||||||| | |||| | |
|
|
| T |
38248725 |
attgctgttgagatattttcttggctacccggaaaaagcatttgcaagctcaaatcaacttgcaactcatgctttgaattttcggaagaagctgttttta |
38248824 |
T |
|
| Q |
399 |
aaacaaagcaggcacaaaatatgtttgggagggatgacacatgcttcttcattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagtt |
498 |
Q |
| |
|
||||||||||||| | ||| |||| |||| |||||| ||||| |||||||||| |||||||||||||||| ||||| ||||| ||| |||| |||| |
|
|
| T |
38248825 |
aaacaaagcaggctcgtaatctgttcgggaaggatgatacatgtttcttcattc---aacccgatcaaataagccaaaggtacacaaaaagagtacagtt |
38248921 |
T |
|
| Q |
499 |
acactctttacctcaaaaccgacaatcttctgatgcccctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtct |
598 |
Q |
| |
|
|| ||||||||| |||||||||||||||| | |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38248922 |
gcattctttacctgaaaaccgacaatcttcgggtgcccctaacaaagctttgagttttctatcaaattcaatttgtgtct-tagcttctagtaatggtct |
38249020 |
T |
|
| Q |
599 |
agttgttggtcacaccattaatg |
621 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38249021 |
agttgttggtcacaccattaatg |
38249043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 38253518 - 38253659
Alignment:
| Q |
13 |
ttattctcattaattgatagaaaagggtttttattttaaaaaagatattcccaatttttaaaaattgattcgatattgttagggctc----tataa---- |
104 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| || ||||| | | | |
|
|
| T |
38253518 |
ttattctcattaattgatagacaagggttttgattttaaaaaagatattcccaattttaaaaaatttattcgatattgctatggctcggtgtttgaaacc |
38253617 |
T |
|
| Q |
105 |
--tctatatatacatgcatctcaaaacaacctaaagcaactc |
144 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38253618 |
tctatatatatacatgcatctcaaaacaacctaaagcaactc |
38253659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 55 - 607
Target Start/End: Original strand, 22176539 - 22177094
Alignment:
| Q |
55 |
agatattcccaatttttaaaaattgattcgatattgttagggctctataatctatatatacatgcatctcaaaacaacctaaagcaactcagaaaaaaca |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
22176539 |
agatattcccaatttttaaaaattgattcgatattgttagggctctataatttctatatacatgcgtctcaaaacaacttaaagcaactcagaaaaaaca |
22176638 |
T |
|
| Q |
155 |
ctttgtttcacagttc-------catcacctcttccaattgttannnnnnnnnnnnnnnnnnctattcctcctttttacaatccctccaccatcttccac |
247 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22176639 |
ctttgtttcacagttcacagttccatcacatcttccaattgttattttgctttttgttttttctattcctcctttttacaatccctccaccatcttccac |
22176738 |
T |
|
| Q |
248 |
tagatttctttgtttttcatcattctcaatttagaagtttctcaagacaatattgcttttgagatattttcttggctaccagcaaaaagcatttgcaagc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22176739 |
tagatttctttgtttttcatcattctcaacatggaagtttctcaagacatta---cttttgagatattttcttggctaccggcaaaaagcatttgcaagt |
22176835 |
T |
|
| Q |
348 |
tcaaattaacttgcaactcatcctcccagtttttggaagaaacacttttcaaaacaaagcaggcacaaaatatgtttgggagggatgacacatgcttctt |
447 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22176836 |
tcaaatcaacttgcaactcatcctccgagttttcggaagaaacactttccaaaacaaagcaggcacataatatgtttgggagggatgacacatgcttctt |
22176935 |
T |
|
| Q |
448 |
cattcttcaacccgatcaaataagtcaaagttacactgaaatagtagagttacactctttacctcaaaaccgacaatcttctgatgcccctaacgaagct |
547 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| | ||||||||||||| ||||||||| ||||| |
|
|
| T |
22176936 |
cattcttcgacccgatcaaataagtcaaagttacactgaaatagtagagtcacattctttgcctcaagatcgacaatcttctggtgcccctaaacaagct |
22177035 |
T |
|
| Q |
548 |
ttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttgg |
607 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
22177036 |
ttgagattcctatcaaattcagtttgtgtct-taggttctagtaatggtctagttgttgg |
22177094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 621
Target Start/End: Original strand, 20656606 - 20656686
Alignment:
| Q |
540 |
acgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatg |
621 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20656606 |
acgatgctttgagtttcctatcaaattcagtttgtgtctta-gcttctagtaatggtctagttgttggtcacaccattaatg |
20656686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 302678 - 302590
Alignment:
| Q |
261 |
ttttcatcattctcaatttagaagtttctcaagacaatattgcttttgagatattttcttggctaccagcaaaaagcatttgcaagctcaaa |
352 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
302678 |
ttttcatgattctcaacatggaagtttctcaagaca---ttgcttttgagatattttcttggctaccggcaagaagcatttgcaagttcaaa |
302590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 34233323 - 34233260
Alignment:
| Q |
297 |
atattgcttttgagatattttcttggctaccagcaaaaagcatttgcaagctcaaattaacttg |
360 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| | ||||||||| |||||| |||||| |
|
|
| T |
34233323 |
atattgctttcgagatattttcatggctaccagcaaagattatttgcaagttcaaatcaacttg |
34233260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 581 - 621
Target Start/End: Complemental strand, 20656460 - 20656420
Alignment:
| Q |
581 |
agcttctagtaatggtctagttgttggtcacaccattaatg |
621 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
20656460 |
agcttatagtaatgatctagttgttggtcacaccattaatg |
20656420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 581 - 619
Target Start/End: Original strand, 12036383 - 12036421
Alignment:
| Q |
581 |
agcttctagtaatggtctagttgttggtcacaccattaa |
619 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
12036383 |
agcttgtagtaatgatctagttgttggtcacaccattaa |
12036421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 4355136 - 4355206
Alignment:
| Q |
297 |
atattgcttttgagatattttcttggctaccagcaaaaagcatttgcaagctcaaattaacttgcaactca |
367 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||| ||| |||||||||| || | ||||||||||||| |
|
|
| T |
4355136 |
atattgcttttgagatattttcatggttaccggcaaagagcgtttgcaagcttaactcaacttgcaactca |
4355206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 4675776 - 4675706
Alignment:
| Q |
297 |
atattgcttttgagatattttcttggctaccagcaaaaagcatttgcaagctcaaattaacttgcaactca |
367 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||| ||| |||||||||| || | ||||||||||||| |
|
|
| T |
4675776 |
atattgcttttgagatattttcatggttaccggcaaagagcgtttgcaagcttaactcaacttgcaactca |
4675706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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