View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8755_low_10 (Length: 474)
Name: NF8755_low_10
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 14178450 - 14178006
Alignment:
| Q |
17 |
aaggaaaaactaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacataccccacgtggtgggaccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178450 |
aaggaaaaactaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacataccccacgtggtgggaccaa |
14178351 |
T |
|
| Q |
117 |
caattctccccctccagccaaagggagatatcctcgcaattcattcaccggcgatccatgccgatcaactcggcacaaagttgaagcttttcacgtgcta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178350 |
caattctccccctccagccaaagggagatatcctcgcaattcattcaccggcgatccatgccgatcaactcggcacaaagttgaagcttttcacgtgcta |
14178251 |
T |
|
| Q |
217 |
caactttcgtcaacatatccgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgcaaccaatgatatctgac |
316 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178250 |
caactttcgtcaacatatctgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgcaaccaatgatatctgac |
14178151 |
T |
|
| Q |
317 |
atcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcattccc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178150 |
atcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcattccc |
14178051 |
T |
|
| Q |
417 |
aattgatcaagaaatctttttagccaaagcatttccttctctgct |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14178050 |
aattgatcaagaaatctttttagccaaagcatttccttccctgct |
14178006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 101 - 461
Target Start/End: Original strand, 28607507 - 28607867
Alignment:
| Q |
101 |
cacgtggtgggaccaacaattctccccctccagccaaagggagatatcctcgcaattcattcaccggcgatccatgccgatcaactcggcacaaagttga |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
28607507 |
cacgtggtggggccaacaattctccccctccagccaaagggagatatcatcgcaattcattcacctgcgatccatgccgaacaactcggcacaaagttga |
28607606 |
T |
|
| Q |
201 |
agcttttcacgtgctacaactttcgtcaacatatccgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607607 |
agcttttcacgtgctacaactttcgtcaacatattcgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgca |
28607706 |
T |
|
| Q |
301 |
accaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607707 |
gccaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataacgtacct |
28607806 |
T |
|
| Q |
401 |
ttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttctctgct |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28607807 |
ttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttccctgct |
28607867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 14173696 - 14173595
Alignment:
| Q |
17 |
aaggaaaaactaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacataccccacgtggtgggaccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14173696 |
aaggaaaaactaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacataccccacgtggtgggaccaa |
14173597 |
T |
|
| Q |
117 |
ca |
118 |
Q |
| |
|
|| |
|
|
| T |
14173596 |
ca |
14173595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 44161346 - 44161245
Alignment:
| Q |
17 |
aaggaaaaactaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacataccccacgtggtgggaccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44161346 |
aaggaaaaactaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacataccccacgtggtgggaccaa |
44161247 |
T |
|
| Q |
117 |
ca |
118 |
Q |
| |
|
|| |
|
|
| T |
44161246 |
ca |
44161245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 55 - 461
Target Start/End: Complemental strand, 12935141 - 12934736
Alignment:
| Q |
55 |
tttgacaattgcttgttgcaattttccttttggctggaacataccccac--gtggtgggaccaacaattctccccctccagccaaagggagatatcctcg |
152 |
Q |
| |
|
|||| ||||||||||| |||||| || |||||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12935141 |
tttggcaattgcttgtagcaattgtc--tttggctgga-cataacccacacgtggtggggccaacaattctccccctccagccaaagggagatattctcg |
12935045 |
T |
|
| Q |
153 |
caattcattcaccggcgatccatgccgatcaactcggcacaaagttgaagcttttcacgtgctacaactttcgtcaacatatccgcgggatttttatcgg |
252 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935044 |
caattcattcacttgcgatccatgccgatcaactcggcacaaagttgaagcttttcacgtgctacaactttcgtcaacatatccgcgggatttttatcgg |
12934945 |
T |
|
| Q |
253 |
tgtgaatcttttccaacataaattgttgttcttccgctgcttgacgcaaccaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcatt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934944 |
tgtgaatcttttccaacataaattgttgttctcccgctgcttgacgcaaccaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcatt |
12934845 |
T |
|
| Q |
353 |
cttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttcc |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934844 |
cttactcaaatccaaagcgctttgactatcgcaatggataacgtacctttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttcc |
12934745 |
T |
|
| Q |
453 |
ttctctgct |
461 |
Q |
| |
|
||| ||||| |
|
|
| T |
12934744 |
ttccctgct |
12934736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 120 - 419
Target Start/End: Complemental strand, 17123843 - 17123537
Alignment:
| Q |
120 |
ttctccccctccagccaaagggagatatcctcgcaattcattcaccggcgatccatgccgatcaactcggcacaaagttgaagcttttcacgtgctacaa |
219 |
Q |
| |
|
||||| ||||| |||||| ||||||||||||| | ||||||||| |||||||||||||||| ||||| | ||| |||||| ||||||| | |||| |
|
|
| T |
17123843 |
ttctctccctcttgccaaaaggagatatcctcgga--tcattcaccttcgatccatgccgatcatctcggaataaatttgaagtttttcacaaacgacaa |
17123746 |
T |
|
| Q |
220 |
c-tttcgtcaacatatccgcgggatttttatcggtgtgaatcttttccaacataaattgttgttcttccgctgcttgacgcaaccaatgatatctgacat |
318 |
Q |
| |
|
||| | |||||||| | | ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17123745 |
aattttgccaacatattcacaggatttttatcagtgtgaatctttttcaacataaattgttgttcttccactgcttgacgcaaccaatgatatctgacat |
17123646 |
T |
|
| Q |
319 |
caatatgctttgtacgagagtggtacatcgcattcttactcaaatccaaagcgctttgactatcgcaatggataac--------gtacctttcctgcttc |
410 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
17123645 |
caatatactttgtacaagagtggtacatcgcattcttactcgaatccaaaacgctttgattatcgcaatggataacgacatgaagtacctttcctgcttc |
17123546 |
T |
|
| Q |
411 |
attcccaat |
419 |
Q |
| |
|
||||||||| |
|
|
| T |
17123545 |
attcccaat |
17123537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 267 - 461
Target Start/End: Complemental strand, 15300716 - 15300522
Alignment:
| Q |
267 |
aacataaattgttgttcttccgctgcttgacgcaaccaatgatatctgacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatcca |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300716 |
aacataaattgttgttcttccgctgcttgaagcaaccaatgatatatgacatcaatatgctttgtacgagagtggtacatcgcattcttactcaaatcca |
15300617 |
T |
|
| Q |
367 |
aagcgctttgactatcgcaatggataacgtacctttcctgcttcattcccaattgatcaagaaatctttttagccaaagcatttccttctctgct |
461 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
15300616 |
aagcgctttgactatcacaatggataacgtacctttcctgcttcattcccaattgatcatgaattctttttagccaaagcatttccttccctgct |
15300522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 15289996 - 15289895
Alignment:
| Q |
17 |
aaggaaaaactaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacataccccacgtggtgggaccaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
15289996 |
aaggaaaaactaagccatgcatttaatgtgtagaagactttgacaattgcttgttgcaattttccttttggctggaacatgtcccacatggtgggaccaa |
15289897 |
T |
|
| Q |
117 |
ca |
118 |
Q |
| |
|
|| |
|
|
| T |
15289896 |
ca |
15289895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 15302703 - 15302602
Alignment:
| Q |
17 |
aaggaaaaactaagccatgcatttaatgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacataccccacgtggtgggaccaa |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
15302703 |
aaggaaaatctaagccatgcatttaatgtgtagaagactttgacaattgcttgttgcgattttccttttggctggaacatgccccacatggtgggaccaa |
15302604 |
T |
|
| Q |
117 |
ca |
118 |
Q |
| |
|
|| |
|
|
| T |
15302603 |
ca |
15302602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 37041079 - 37041128
Alignment:
| Q |
61 |
aattgcttgttgcaattttccttttggctggaacataccccacgtggtggg |
111 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37041079 |
aattgcttcatgcatttttccttt-ggctggaacataccccacgtggtggg |
37041128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 42911874 - 42911978
Alignment:
| Q |
20 |
gaaaaactaagccatgcattta------atgtgtagaagaatttgacaattgcttgttgcaattttccttttggctggaacataccccacgtggtgggac |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42911874 |
gaaaaactaagccatgcatttacggttaatgtgtagaagactttgacaattgtttgttgcaattttccttttagctggaacataccccacgtggtgggac |
42911973 |
T |
|
| Q |
114 |
caaca |
118 |
Q |
| |
|
||||| |
|
|
| T |
42911974 |
caaca |
42911978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 142
Target Start/End: Complemental strand, 33811298 - 33811268
Alignment:
| Q |
112 |
accaacaattctccccctccagccaaaggga |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33811298 |
accaacaattctccccctccagccaaaggga |
33811268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 142
Target Start/End: Complemental strand, 33816216 - 33816186
Alignment:
| Q |
112 |
accaacaattctccccctccagccaaaggga |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33816216 |
accaacaattctccccctccagccaaaggga |
33816186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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