View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_low_11 (Length: 463)
Name: NF8755_low_11
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 44946024 - 44946247
Alignment:
| Q |
2 |
gctgaggatgctgccatggggaagaagaacaggattactagagatagggatcgtgatataagtgagaaacttgatcttggttatgcttctactaagcatg |
101 |
Q |
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| T |
44946024 |
gctgaggatgctgccatggggaagaagagcaggattactagagatagggatcgtgatataagtgagaaacttgatcttggttatgcttctcctaagcatg |
44946123 |
T |
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| Q |
102 |
ggacagagttcctgtacgatgaaaggctattcaacgagaataaatccaccttgttcacgccgaagaaagatgtttacacattgatgaagaagctggccga |
201 |
Q |
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| T |
44946124 |
ggacagaggttctgtacgatgaaaggctattcaacgaggataaatccaccttgttcacgccgaagaaagatgtttacacattgatgaagaagctggccga |
44946223 |
T |
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| Q |
202 |
gtttgagcctgaaaaagctgatcc |
225 |
Q |
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| T |
44946224 |
gtttgagcctgaaaaagctgatcc |
44946247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 286 - 445
Target Start/End: Original strand, 44946308 - 44946467
Alignment:
| Q |
286 |
gataaactcttgattgcttgttaaaactgtgctggttagtgcaaaattaggcttatgatgttgtcttttattgaaattttgttattgtcatgctccaact |
385 |
Q |
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| T |
44946308 |
gataaactcttgactgcttgttaaaactgtgctggttagtgcacaattaggcttatgatgttgtcttttattgaaattttgttattgtcatgctccaact |
44946407 |
T |
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| Q |
386 |
ccaatgtgtatggcaaaagnnnnnnnttcttgatgtttaccgtgacctcattatcttgat |
445 |
Q |
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| T |
44946408 |
ccaatgtgtatggcaaaagaaaaaaattcttgatgtttaccgtgacctaattatcttgat |
44946467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 11454918 - 11454779
Alignment:
| Q |
6 |
aggatgctgccatggggaagaagaacaggattactagagatagggatcgtgatataagtgagaaacttgatcttggttatgcttctactaagcatgggac |
105 |
Q |
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|||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| || ||||| ||||| |
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| T |
11454918 |
aggatgctgccatgggaaagaagagcaagattactagagatagggatcgtgatataagtgagaaagttgctcttggtatggcttccaccaagcaagggac |
11454819 |
T |
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| Q |
106 |
agagttcctgtacgatgaaaggctattcaacgagaataaa |
145 |
Q |
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| T |
11454818 |
agaggtcatgtatgatgagaggctattcaaccaggataaa |
11454779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 395271 - 395347
Alignment:
| Q |
6 |
aggatgctgccatggggaagaagaacaggattactagagatagggatcgtgatataagtgagaaacttgatcttggt |
82 |
Q |
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| T |
395271 |
aggatgttggcatgggaaagaagtgcaagattactagagataaggatcgtgatataagtgagaaggttgctcttggt |
395347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 373
Target Start/End: Original strand, 51568223 - 51568309
Alignment:
| Q |
286 |
gataaactcttgattgcttgttaaaactgtgctggttagtgcaaaattaggcttatgatgttgtcttttattgaaattttgttattgt |
373 |
Q |
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| T |
51568223 |
gataaactcctggttgcttgttaaaactgtactggttag-acgcaattaggaatatgatgttgtcttttattgatcttttgctattgt |
51568309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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