View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_low_12 (Length: 421)
Name: NF8755_low_12
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 38057010 - 38056794
Alignment:
| Q |
19 |
ttcgtcttcttcacgttccaaatcaaatgctgctaattctgaaatgaccaaagctaataacaacatttccctcatcccaatccaccactcctacaacact |
118 |
Q |
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| T |
38057010 |
ttcgtcttcttcacgttccaaatcaaatgctgctaattctgaaatgaccaaagctaataacaacatttccctcatcccaatccaccactcctacaacact |
38056911 |
T |
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| Q |
119 |
acaaacacctcgcctgacaatagtgtcaagaatgagaaaaagaaaaaggttcttttgctatatacactttctttctttctttgtaattttcctcatgcat |
218 |
Q |
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| T |
38056910 |
acaaacacctcgcctgacaatagtgtcaagaatgagaaaaagaaaaaggttcttttgctatatacactttctttctttctttgtaattttcctcatgcat |
38056811 |
T |
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| Q |
219 |
tgcattgttattgagcc |
235 |
Q |
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| T |
38056810 |
tgcattgttattgagcc |
38056794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 246 - 406
Target Start/End: Complemental strand, 38056764 - 38056604
Alignment:
| Q |
246 |
gtgttaagtctatcttgccgaagatttttggatcaaagcgaaatgggagaggctcagacgaagatgcactcaaatcaaatacagaaggagattcaatttc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38056764 |
gtgttaagtctatcttgccgaagatttttggatcaaagcgaaatgggagaggctcagacgaagatgcactcaaatcaaatacagaaggagattcaatttc |
38056665 |
T |
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| Q |
346 |
aattagttttggtatttattacactagttacttcttaattcccatataataatctattcat |
406 |
Q |
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| T |
38056664 |
aattagttttggtatttattacactagttacttcttaattcccatataataatctattcat |
38056604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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