View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_low_17 (Length: 372)
Name: NF8755_low_17
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 80 - 356
Target Start/End: Complemental strand, 7275291 - 7275015
Alignment:
| Q |
80 |
gttatctaaatcttgttcgttctcattccttatcctctttctctcttaacgttacaccgcacaacactgaacaacttcaactctcttcttctttctccaa |
179 |
Q |
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| T |
7275291 |
gttatctaaatcttgttcgttctcattccttatcctctttctctcttaacgttacaccgcacaacactgaacaacttcaactctcttcttctttctccaa |
7275192 |
T |
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| Q |
180 |
cgacgcggttttacttccaattcaagaacaagaacaacaacaatcatctcctccaactccagatgaagataaatccactaccaagcttaaaaagaagaag |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7275191 |
cgacgcggttttacttccaattcaagaacaagaacaacaacaatcatctcctccaactccagatgaagataaatccactaccaagcttaaaaagaagaag |
7275092 |
T |
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| Q |
280 |
aaagataaaaacgacgatgataacagtagcaacatcgataaccgcttcaagctccgtaacggaagagaggttcgttc |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7275091 |
aaagataaaaacgacgatgataacagtagcaacatcgataaccgcttcaagctccgtaacggaagagaggttcgttc |
7275015 |
T |
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