View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_low_18 (Length: 360)
Name: NF8755_low_18
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 15 - 360
Target Start/End: Original strand, 9192000 - 9192344
Alignment:
| Q |
15 |
agagatgaattgttaactaattatttgatctgcttaaagaaatatattaaccgtctataaatcttaactcaaccgataaaaatatcgaaattgtagttca |
114 |
Q |
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| T |
9192000 |
agagatgaattgttaactaattatttgatctgcttaaagaaatatattaaccgtctataaatcttaactcaaccgataaaaatattgaaattgtagttca |
9192099 |
T |
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| Q |
115 |
tatactgattccaccgtttatacgtgtgactttctaatgatataaagaaaattgttgataatgatattttttccacaaattaaaatttcaggatccgacc |
214 |
Q |
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| T |
9192100 |
tacactgattc-accgtttatacgtgtgactttctaatgatataaagaaaattgtttataatgatattttttccacaaattaaaatttcagggtccgacc |
9192198 |
T |
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| Q |
215 |
ctctataacgtcccaattagagccaaatgggttttgacagttgaaaaggcagagactcacctcaccacctccctcacgagtacgttgtgggtattaatgt |
314 |
Q |
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| T |
9192199 |
ctctataacgtcccaattagagccaaatgggttttgacagttgaaaaggcagagactcacctcaccacctccctcacgagtacgttgtgggtattaatgt |
9192298 |
T |
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| Q |
315 |
tgctgtctgtcaatttcagaaagagattccctcatttaatattttc |
360 |
Q |
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| T |
9192299 |
tgctgtctgtcgatttcagaaagagattccctcatttaatattttc |
9192344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 35868260 - 35868297
Alignment:
| Q |
71 |
ataaatcttaactcaaccgataaaaatatcgaaattgt |
108 |
Q |
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| T |
35868260 |
ataagtcttaactcaaccgataaaaatatcgaaattgt |
35868297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 41843914 - 41843949
Alignment:
| Q |
73 |
aaatcttaactcaaccgataaaaatatcgaaattgt |
108 |
Q |
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| T |
41843914 |
aaatcttaactcaaccgataaaaatattgaaattgt |
41843949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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