View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_low_19 (Length: 349)
Name: NF8755_low_19
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 185 - 335
Target Start/End: Complemental strand, 20486259 - 20486109
Alignment:
| Q |
185 |
ttattacataatacaaaatctgaagaaacaaagtataaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagta |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20486259 |
ttattacataatacaaaatctgaagaaacaaagtatgaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagta |
20486160 |
T |
|
| Q |
285 |
gtacattctcatattagacagtacaattcccttgtataaataacctgatgt |
335 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20486159 |
gtacattctcatattagacagtacaattcctttgtataaataacctgatgt |
20486109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 186 - 335
Target Start/End: Complemental strand, 20481436 - 20481287
Alignment:
| Q |
186 |
tattacataatacaaaatctgaagaaacaaagtataaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtag |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20481436 |
tattacataatacaaaatctgaagaaacaaagtatgaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtag |
20481337 |
T |
|
| Q |
286 |
tacattctcatattagacagtacaattcccttgtataaataacctgatgt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20481336 |
tacattctcatattagacagtacaattcctttgtataaataacctgatgt |
20481287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 328
Target Start/End: Original strand, 28014929 - 28015062
Alignment:
| Q |
186 |
tattacataatacaaaatctgaagaaacaaagtataaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtag |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
28014929 |
tattacataatacaaaatctgaagaaacaaagcatgaagaaaa---------tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtag |
28015019 |
T |
|
| Q |
286 |
tacattctcatattagacagtacaattcccttgtataaataac |
328 |
Q |
| |
|
||||||| ||||| ||| |||||||||| ||||||||||||| |
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| T |
28015020 |
tacattcacatataagatagtacaattcatttgtataaataac |
28015062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 328
Target Start/End: Original strand, 28019752 - 28019885
Alignment:
| Q |
186 |
tattacataatacaaaatctgaagaaacaaagtataaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtag |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
28019752 |
tattacataatacaaaatctgaagaaacaaagcatgaagaaaa---------tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtag |
28019842 |
T |
|
| Q |
286 |
tacattctcatattagacagtacaattcccttgtataaataac |
328 |
Q |
| |
|
||||||| ||||| ||| |||||||||| ||||||||||||| |
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|
| T |
28019843 |
tacattcacatataagatagtacaattcatttgtataaataac |
28019885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 22246986 - 22246805
Alignment:
| Q |
1 |
tttcaatgttctaatgattacgattgattgttggtgtataatatgaactcgctactagttttaacaatagtaaaa-ctggagactatcaataaaaaagaa |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||| | ||||||||||||||||||||| |
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| T |
22246986 |
tttcaatgttttaatgattacgattgattgttggtgtataatatgaagtcgctattaatattaacaatagtaaaaacccgagactatcaataaaaaagaa |
22246887 |
T |
|
| Q |
100 |
gtagaaacatgtgattctttttaaaggaataaaaacatgagatagtgatcataaactaaataaaattaaagaaaatattaactt |
183 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22246886 |
gtagaaacatgagattctttttaaaggaataaaaacat--catagtgatcataaactaaataaaattaaagaaaatattaactt |
22246805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 186 - 335
Target Start/End: Complemental strand, 32622163 - 32622013
Alignment:
| Q |
186 |
tattacataatacaaaatctgaagaaacaaagtataaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtag |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
32622163 |
tattacataatacaaaatctgaagaaacaaagtatgaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagcag |
32622064 |
T |
|
| Q |
286 |
tacattctca-tattagacagtacaattcccttgtataaataacctgatgt |
335 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||||||||||||||| ||||| |
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| T |
32622063 |
tactttctcattattagatagtacaattcccttgtataaataaccagatgt |
32622013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 328
Target Start/End: Original strand, 6339899 - 6340033
Alignment:
| Q |
185 |
ttattacataatacaaaatctgaagaaacaaagtataaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagta |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
6339899 |
ttattacataatacaaaatctgaagaaacaaagcatgaagaaaa---------tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagta |
6339989 |
T |
|
| Q |
285 |
gtacattctcatattagacagtacaattcccttgtataaataac |
328 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| ||||||||||||| |
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|
| T |
6339990 |
gtacattcacatataagatagtacaattcatttgtataaataac |
6340033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 328
Target Start/End: Original strand, 6344723 - 6344856
Alignment:
| Q |
186 |
tattacataatacaaaatctgaagaaacaaagtataaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtag |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
6344723 |
tattacataatacaaaatctgaagaaacaaagcatgaagaaaa---------tgcagtacaagctacttaaaatgtagtacaatagcttaagtatagtag |
6344813 |
T |
|
| Q |
286 |
tacattctcatattagacagtacaattcccttgtataaataac |
328 |
Q |
| |
|
||||||| ||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
6344814 |
tacattcacatataagatagtacaattcatttgtataaataac |
6344856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 186 - 335
Target Start/End: Complemental strand, 16988600 - 16988450
Alignment:
| Q |
186 |
tattacataatacaaaatctgaagaaacaaagtataaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagtag |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
16988600 |
tattacataatacaaaatctgaagaaacaaagtatgaagaaaagcaatgccttgcagtacaagttacttaaagtgtagtacaatagcttaagtatagcag |
16988501 |
T |
|
| Q |
286 |
tacattctca-tattagacagtacaattcccttgtataaataacctgatgt |
335 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
16988500 |
tactttctcattattagatagtacaattcccttgtataaataaccagatgt |
16988450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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