View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8755_low_2 (Length: 603)

Name: NF8755_low_2
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8755_low_2
NF8755_low_2
[»] chr5 (21 HSPs)
chr5 (78-585)||(6374469-6374975)
chr5 (126-420)||(33937009-33937303)
chr5 (82-563)||(26505997-26506478)
chr5 (82-461)||(38739806-38740186)
chr5 (82-461)||(35049221-35049601)
chr5 (82-564)||(17344066-17344548)
chr5 (111-357)||(16109401-16109647)
chr5 (78-286)||(8736253-8736461)
chr5 (82-461)||(20883416-20883796)
chr5 (1-118)||(6375106-6375218)
chr5 (175-577)||(20159583-20159986)
chr5 (207-293)||(28196934-28197020)
chr5 (82-180)||(16109654-16109754)
chr5 (64-127)||(8736135-8736198)
chr5 (378-469)||(20421331-20421423)
chr5 (57-119)||(26505790-26505852)
chr5 (392-469)||(13402481-13402559)
chr5 (74-191)||(28197011-28197127)
chr5 (78-127)||(28197190-28197239)
chr5 (503-564)||(35049643-35049705)
chr5 (78-127)||(33937407-33937456)
[»] chr8 (21 HSPs)
chr8 (78-585)||(15892887-15893392)
chr8 (212-579)||(24619106-24619474)
chr8 (133-585)||(30944534-30944991)
chr8 (85-585)||(29670977-29671456)
chr8 (84-356)||(5015884-5016156)
chr8 (78-210)||(24618824-24618956)
chr8 (105-293)||(4472689-4472876)
chr8 (82-278)||(33228392-33228587)
chr8 (216-382)||(32076268-32076434)
chr8 (366-478)||(22208802-22208915)
chr8 (78-276)||(27187638-27187832)
chr8 (82-356)||(5075604-5075870)
chr8 (392-577)||(27675562-27675742)
chr8 (515-579)||(32076073-32076136)
chr8 (57-127)||(15892638-15892708)
chr8 (226-293)||(27675397-27675464)
chr8 (126-196)||(32076438-32076509)
chr8 (207-278)||(44015537-44015608)
chr8 (392-469)||(9601989-9602067)
chr8 (394-479)||(6662292-6662378)
chr8 (394-479)||(6742694-6742780)
[»] chr4 (17 HSPs)
chr4 (129-585)||(41784513-41784975)
chr4 (113-382)||(18486393-18486658)
chr4 (137-461)||(50334565-50334883)
chr4 (82-314)||(1938738-1938970)
chr4 (113-324)||(156573-156784)
chr4 (191-577)||(5317867-5318255)
chr4 (202-361)||(50006869-50007028)
chr4 (378-550)||(21178227-21178400)
chr4 (142-324)||(18777689-18777869)
chr4 (233-479)||(54254149-54254396)
chr4 (137-210)||(5534103-5534177)
chr4 (191-293)||(21178478-21178580)
chr4 (137-238)||(41420104-41420206)
chr4 (78-123)||(41785086-41785131)
chr4 (523-564)||(50007181-50007223)
chr4 (515-564)||(50334937-50334987)
chr4 (521-577)||(54254051-54254107)
[»] chr3 (22 HSPs)
chr3 (336-585)||(30530965-30531215)
chr3 (137-564)||(27933956-27934385)
chr3 (126-296)||(30531215-30531385)
chr3 (126-417)||(20514124-20514416)
chr3 (137-358)||(53768216-53768438)
chr3 (175-293)||(23953464-23953582)
chr3 (212-292)||(9193679-9193759)
chr3 (91-165)||(32125083-32125157)
chr3 (175-293)||(6804329-6804449)
chr3 (65-119)||(27934978-27935032)
chr3 (227-293)||(49435963-49436029)
chr3 (515-564)||(20514512-20514561)
chr3 (47-119)||(32124865-32124938)
chr3 (504-577)||(49436242-49436315)
chr3 (149-293)||(51409849-51409993)
chr3 (137-238)||(30930111-30930213)
chr3 (521-577)||(30540616-30540672)
chr3 (82-129)||(9194007-9194054)
chr3 (523-564)||(30930259-30930301)
chr3 (82-119)||(30531562-30531599)
chr3 (381-469)||(51410081-51410170)
chr3 (138-198)||(9193756-9193816)
[»] chr1 (8 HSPs)
chr1 (91-585)||(38810198-38810667)
chr1 (82-457)||(30703499-30703875)
chr1 (82-461)||(25818398-25818776)
chr1 (113-382)||(7318226-7318494)
chr1 (137-377)||(23942989-23943230)
chr1 (82-361)||(1180835-1181115)
chr1 (139-454)||(12067294-12067608)
chr1 (515-564)||(25818294-25818344)
[»] chr7 (16 HSPs)
chr7 (129-464)||(29248723-29249063)
chr7 (78-461)||(44225701-44226080)
chr7 (394-585)||(12869143-12869333)
chr7 (78-226)||(12869384-12869532)
chr7 (86-209)||(26154058-26154181)
chr7 (271-400)||(26153514-26153643)
chr7 (429-577)||(26152099-26152247)
chr7 (212-354)||(23943074-23943216)
chr7 (288-471)||(24503743-24503927)
chr7 (47-119)||(2986956-2987028)
chr7 (91-158)||(12168716-12168783)
chr7 (26-116)||(29256151-29256244)
chr7 (515-564)||(2368624-2368673)
chr7 (82-209)||(10526184-10526310)
chr7 (201-278)||(10526761-10526838)
chr7 (523-557)||(23942870-23942904)
[»] chr2 (16 HSPs)
chr2 (126-471)||(28758715-28759064)
chr2 (82-461)||(19379446-19379826)
chr2 (113-382)||(9827155-9827424)
chr2 (167-415)||(35004139-35004387)
chr2 (148-360)||(22728332-22728544)
chr2 (82-382)||(26224580-26224879)
chr2 (148-278)||(36342433-36342563)
chr2 (47-127)||(19478936-19479016)
chr2 (361-578)||(36342118-36342336)
chr2 (378-570)||(19506970-19507164)
chr2 (175-278)||(19507225-19507328)
chr2 (378-484)||(41634286-41634392)
chr2 (515-564)||(35003990-35004040)
chr2 (524-557)||(9827560-9827593)
chr2 (515-567)||(22728700-22728753)
chr2 (78-127)||(28759168-28759217)
[»] chr6 (6 HSPs)
chr6 (82-359)||(1031062-1031339)
chr6 (137-451)||(7648023-7648334)
chr6 (202-442)||(8356569-8356810)
chr6 (502-585)||(2289264-2289347)
chr6 (527-570)||(7648407-7648450)
chr6 (523-564)||(1030855-1030897)
[»] scaffold0015 (1 HSPs)
scaffold0015 (82-358)||(32943-33219)
[»] scaffold0070 (2 HSPs)
scaffold0070 (167-293)||(45708-45834)
scaffold0070 (429-484)||(45963-46018)
[»] scaffold1190 (1 HSPs)
scaffold1190 (394-479)||(2080-2166)


Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 78 - 585
Target Start/End: Complemental strand, 6374975 - 6374469
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattc 177  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6374975 aatcacataatcgcaaataaacgatccaaattacacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattc 6374876  T
Q  178 gaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaat 277  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6374875 gaacacattacactattacacattaataaatattacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaat 6374776  T
Q  278 caacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactat 377  Q
    |||||||||  |||||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||||| |||||||||||||| ||| | | || |    
T  6374775 caacgtcgctgtcatctttgacaagttgtggataatatacggtcttcaaaaaatcctattccttatcctcccccaagtccacgcataacacctct-ctgt 6374677  T
Q  378 tacatgagatattctttgattttcatcaatatgaataaagtatttgttaagtgtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaa 477  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6374676 tacatgagatattctttgattttcatgaatatggataaagtatttgttaaatgtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaa 6374577  T
Q  478 tcttctttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtat 577  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  6374576 tcttctttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttgagacatgtttcacttcaaaaaatataatgaaataacaagtat 6374477  T
Q  578 gaaaataa 585  Q
    ||||||||    
T  6374476 gaaaataa 6374469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 126 - 420
Target Start/End: Complemental strand, 33937303 - 33937009
Alignment:
Q  126 aaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggat 225  Q
    ||||||||||||||||||||| |||||||||||||||||| || | ||||| ||||||||||||||||||||  ||||||||||| |||||||||  ||     
T  33937303 aaattacacataacacaaattcattaaaattcaacattacagagacaaatttgaacacattacactattacatgttaataaatattacacttcaatagac 33937204  T
Q  226 cagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttca 325  Q
    |  ||||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||| | ||||| ||  | |||||||||| ||||||  ||||||     
T  33937203 cgaacataaagaagtaaaatattattttcaaccattaatctaaacatgtaatcaatgtcactatcattttcgataagttgtggaaaatatatcgtcttcc 33937104  T
Q  326 aaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtat 420  Q
    ||||||| | |||||||||||||||||||||||||  |  ||||||||||| |||||||||| |||||||||| ||| ||||||| |||||||||    
T  33937103 aaaagtcctcttctttatcctccctcaagtccacgtttgacacatgtactactacatgagatgttctttgattgtcaccaatatggataaagtat 33937009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 82 - 563
Target Start/End: Original strand, 26505997 - 26506478
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaac 181  Q
    |||||||| |||||||||| |  ||| | ||||||||| || |||||| ||| | |||||||||| |||||||||||||| ||| || | ||||||||||    
T  26505997 acataatctcacataaacggtaaaaaatacacaaattcatcgttaaataacata-aacacaaattcattaaaattcaacaatacggatacaaattcgaac 26506095  T
Q  182 acattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaac 281  Q
    | ||||||||||||||  ||||||||||| ||| |||||  |||| |||||||||||||||| | ||||||| |||||| |  |||||||||||| ||||    
T  26506096 aaattacactattacatgttaataaatattacatttcaaaagatcggacataaagatgtaaagtgttattttcaaccatcacgctaaacatgtaagcaac 26506195  T
Q  282 gtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattaca 381  Q
    ||||| ||||||||  |||||||||||| |||| || |||||  ||||||  | ||||||||||||||||||||||| || |  ||||| |||||||| |    
T  26506196 gtcgctatcatcttcgacaagttgtggaaaatacacggtctttcaaaagtgctcttctttatcctccctcaagtccatgcctgacacatttactattata 26506295  T
Q  382 tgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatct 480  Q
    | | || |||||||||||  | ||||||| |||||| || ||| ||| | |||||| ||||| | ||||||| | |||||| ||| ||||| | ||| |     
T  26506296 tcacatgttctttgatttgaaccaatatggataaagcatctgtcaagttttgcctttaactcattcaacttgccggtggggtttacaaagaacctaaccc 26506395  T
Q  481 tctttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataat 563  Q
    ||||| ||| | |   |||   |||||||  |||||||||| |||||||||||||| ||||||||||||||| ||||||||||    
T  26506396 tctttttcaaggttgtgtaaaggacatgaagttcaactggatcttgtgcatcttcagacatgtttcacttcacaaaatataat 26506478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 82 - 461
Target Start/End: Complemental strand, 38740186 - 38739806
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aa 180  Q
    |||||||| |||||||||| || ||||| | ||||||| || |||||||||| | ||||| |||| |||||||||||||| ||| |||| ||||||| ||    
T  38740186 acataatctcacataaacggtcaaaattacccaaattcatcgttaaattacata-aacacgaattcattaaaattcaacaatacggacacaaattcggaa 38740088  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     ||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||| |||||||| |||||| |  | ||||||||||||||    
T  38740087 aacattacactattacacgttaataaatattagacttcaacggatcggacataaagatgtaaaagattattttcaaccatcacacgaaacatgtaatcaa 38739988  T
Q  281 cgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattac 380  Q
    |||| | ||||||||| || ||||||||| |||| || |||||| ||  ||| | ||| |||||||||| ||||||||||| | | || ||||||| |||    
T  38739987 cgtcactatcatctttgactagttgtggaaaatacacggtcttccaacggtcctcttccttatcctcccccaagtccacgcctggaacttgtactactac 38739888  T
Q  381 atgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggg 461  Q
    || | || |||| ||||||  | ||||||| |||||| | | || ||| | |||||||||||||||||||||||||||||||    
T  38739887 ataatatgttctgtgatttgaaccaatatggataaagaagtcgtcaagttttgccttcaactcgtccaacttgtcagtgggg 38739806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 82 - 461
Target Start/End: Original strand, 35049221 - 35049601
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aa 180  Q
    |||||||| |||||||||| || ||||| | ||||||| || ||||||||||   |||||||||| |||||||||||||| ||| |||| ||||||| ||    
T  35049221 acataatctcacataaacggtcaaaattacccaaattcatcgttaaattacatc-aacacaaattcattaaaattcaacaatacggacacaaattcggaa 35049319  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||| |  | ||||||||||||||    
T  35049320 aacattacactattacacattaataaatattacacttcaacggatcggacataaagatgtaaaagattattttcaaccatcacgcgaaacatgtaatcaa 35049419  T
Q  281 cgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattac 380  Q
    |||| | ||||||||| || ||||||||| ||||  | |||||| ||  ||| | ||| |||||||||| ||||||||||| | | || ||||||| |||    
T  35049420 cgtcactatcatctttgactagttgtggaaaatacgcggtcttccaacggtcctcttccttatcctcccacaagtccacgcctggaacttgtactactac 35049519  T
Q  381 atgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggg 461  Q
    || | || |||| ||||||  | ||||||| |||||| | | || ||| | || ||||||||||||||||||||| ||||||    
T  35049520 ataatatgttctgtgatttgaaccaatatggataaagaagtcgtcaagttttgtcttcaactcgtccaacttgtcggtgggg 35049601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 82 - 564
Target Start/End: Complemental strand, 17344548 - 17344066
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaac 181  Q
    |||||||| |||||||| | || ||||| ||||||||| || |||||||| | | | |||||||| |||||||||||||| ||| |||| ||||||||||    
T  17344548 acataatctcacataaatggtcaaaattacacaaattcatcgttaaattatata-accacaaattcattaaaattcaacaatacagacacaaattcgaac 17344450  T
Q  182 acattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaac 281  Q
    | |||||  |||||||| ||||||||||| ||||||||| ||||||||| |||||||  ||| | ||||||| |||||| |  | ||||||||||||| |    
T  17344449 aaattacgatattacacgttaataaatattacacttcaatggatcagacgtaaagattcaaagtgttattttcaaccatcacacgaaacatgtaatcagc 17344350  T
Q  282 gtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattaca 381  Q
    ||||  ||||||||  |||||||||||| |||| || |||||  ||||||  | ||| |||||||||| ||||||||||| | ||| || ||||||||||    
T  17344349 gtcggtatcatcttcgacaagttgtggaaaatacacggtctttcaaaagttctcttccttatcctcccccaagtccacgcttggcatatttactattaca 17344250  T
Q  382 tgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatct 480  Q
    | | || |||||||||||  | ||||||| |||||| | | || ||| | ||||||||||||||||||||| || |||||| ||| ||||| | ||| ||    
T  17344249 tcacatgttctttgatttgaaccaatatggataaagaagtcgtcaagttttgccttcaactcgtccaacttctcggtggggtttacaaagaacctaacct 17344150  T
Q  481 tctttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatg 564  Q
    ||||| |||||    | ||    ||||||  |||||||||| |||||| ||||| | ||||||||||||||| |||||||||||    
T  17344149 tctttttcacggctacataacgaacatgaagttcaactggatcttgtgtatctttagacatgtttcacttcacaaaatataatg 17344066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 111 - 357
Target Start/End: Complemental strand, 16109647 - 16109401
Alignment:
Q  111 cacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatat 210  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||| ||||||| |||||||||||    
T  16109647 cacaaattcatcgttaaattacacataacacaaattcattaaaattcaacattacagacacaaattcgaaaacattacacaattacactttaataaatat 16109548  T
Q  211 cacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggat 310  Q
     |||||||||||||||||||||||||||| ||||| ||||| | |||||| |  ||||| |||||| |||| |||| ||||||||| | ||||| |||||    
T  16109547 tacacttcaacggatcagacataaagatggaaaatgttattctcaaccatcacgctaaatatgtaagcaacatcgctatcatctttgagaagttatggat 16109448  T
Q  311 aatatacagtcttcaaaaagtcatattctttatcctccctcaagtcc 357  Q
    |||| || |||||| |||| || | ||| ||||||||||||||||||    
T  16109447 aatacacggtcttccaaaaatcctcttccttatcctccctcaagtcc 16109401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 78 - 286
Target Start/End: Original strand, 8736253 - 8736461
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattc 177  Q
    ||||||||||||  ||||||| |||| || ||  |||||||  || |||||||||| |||||||||||| ||||||||||||||||||  ||| ||||||    
T  8736253 aatcacataatcaaacataaatgatccaagttatacaaatttttcgttaaattacatataacacaaattcattaaaattcaacattacaaacacaaattc 8736352  T
Q  178 gaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaat 277  Q
    |||| ||||||| |||||||| ||||||||||| ||||||| | | |||||||||||| ||||||||| ||||||| ||||||||||||||| |||| ||    
T  8736353 gaacgcattacattattacacgttaataaatattacacttcgatgaatcagacataaaaatgtaaaatgttattttcaaccattaacctaaatatgtgat 8736452  T
Q  278 caacgtcgc 286  Q
    ||| |||||    
T  8736453 caatgtcgc 8736461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 82 - 461
Target Start/End: Original strand, 20883416 - 20883796
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aa 180  Q
    |||||||| ||||| |||| || ||||| | ||||||| || ||||||||||   |||||||||| |||||||||||||| ||| |||| ||||||| ||    
T  20883416 acataatctcacatgaacggtcaaaattacccaaattcatcgttaaattacatc-aacacaaattcattaaaattcaacaatacagacacaaattcggaa 20883514  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     ||||||| ||||||||| ||||||||||| | | ||||||||||  |||||||||||||||||  ||||||| ||||||    | ||||||||||||||    
T  20883515 aacattacgctattacacgttaataaatattaaatttcaacggattggacataaagatgtaaaaggttattttcaaccatctcgcgaaacatgtaatcaa 20883614  T
Q  281 cgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattac 380  Q
    |||| | ||||||||| || ||||||||| |||| || |||||| ||  ||| | ||| |||||||||| ||||||||||| |   || ||||||| |||    
T  20883615 cgtcactatcatctttgactagttgtggaaaatacacggtcttccaacggtcctcttccttatcctcccccaagtccacgcctgaaacttgtactactac 20883714  T
Q  381 atgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggg 461  Q
    || | || || | ||||||  | |||||   |||||| | | || ||| | |||||||||||||||||||||||| ||||||    
T  20883715 ataatatgttatgtgatttgaaccaatactgataaagaagtcgtcaagttttgccttcaactcgtccaacttgtcggtgggg 20883796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 6375218 - 6375106
Alignment:
Q  1 atgttatgcaaccaagttattaacaacccgtaatcttaatacactc---attgaatcggattacgccagtttaacaacataatcacataatcgcacataa 97  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||   |||||||| ||||||||||||||||||        ||||||||||||||||    
T  6375218 atgttatacaaccaagttattaacaacccgtaatctttatacactcataattgaatcagattacgccagtttaaca--------acataatcgcacataa 6375127  T
Q  98 acgatctaaattgcacaaatt 118  Q
    |||||||||||| ||||||||    
T  6375126 acgatctaaattacacaaatt 6375106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 577
Target Start/End: Original strand, 20159583 - 20159986
Alignment:
Q  175 ttcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgt 274  Q
    |||||||| ||||||||||||||  | ||||  ||| ||||||||| ||| |  ||| |||||||||| |||||||||| |||||| || ||||||||||    
T  20159583 ttcgaacagattacactattacatgtcaatacgtattacacttcaatggagcgcacacaaagatgtaacatattattttcaaccatcaatctaaacatgt 20159682  T
Q  275 aatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtc-cacgcatagcacatgta 373  Q
    |||| |  | |||||||||   || || || |||| |||| |  |||||| ||  ||| |  ||||||||||||| | || |  || |||  ||| ||||    
T  20159683 aatctatattgccatcatcaggaataatttttggaaaataaatggtcttccaattgtcttcatctttatcctccc-ctagacttacacatgacacctgta 20159781  T
Q  374 ctattacatgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggggttaaaaagac 472  Q
    | | ||||||||||  ||||||||||||| ||| |||   ||||||| ||| ||| |||| ||||||||| ||||| |||| ||||||||||||||| ||    
T  20159782 caaatacatgagatgctctttgattttcaccaagatgggaaaagtatctgtcaagttgtgtcttcaactcatccaatttgttagtgggggttaaaaaaac 20159881  T
Q  473 cttaatcttctttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataaca 572  Q
    ||||||| ||||  | | |     ||||   |||||||||||||||  |||||||||||||||| |||||||| ||| || ||||  | |||||||||||    
T  20159882 cttaatcgtcttcatgaaggcagagtatcgaacatgagcttcaacttcaacttgtgcatcttcagacatgtttaactacacaaaagtttatggaataaca 20159981  T
Q  573 agtat 577  Q
    |||||    
T  20159982 agtat 20159986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 207 - 293
Target Start/End: Complemental strand, 28197020 - 28196934
Alignment:
Q  207 atatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatc 293  Q
    |||| ||||||||| |||||||||| ||| ||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  28197020 atattacacttcaatggatcagacacaaatatgtaaaatgttattttcaaccattaacctaaacacgtaatcaacgttgccatcatc 28196934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 16109754 - 16109654
Alignment:
Q  82 acataatcgcacataaacgatctaa--attgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcga 179  Q
    |||||||  ||||||||||||| ||  ||| ||||||||| || ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||    
T  16109754 acataatatcacataaacgatccaactattacacaaattcatcgttaaattacacataacacaaattcattaaaattcaacattacagacacaaattcga 16109655  T
Q  180 a 180  Q
    |    
T  16109654 a 16109654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 8736135 - 8736198
Alignment:
Q  64 cagtttaacaacataatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaa 127  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  8736135 cagtttaagaacataatcacataatcgcacataaacgatcaaaattacacaaattcgtcgttaa 8736198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 469
Target Start/End: Complemental strand, 20421423 - 20421331
Alignment:
Q  378 tacatgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggggttaaaaa 469  Q
    |||||||||| |||||||||||||| ||| ||| | |||||||||| |||| |||||||||||||| || || ||||||||| ||||||||||    
T  20421423 tacatgagatgttctttgattttcaccaagatgtacaaagtatttgctaagttgtgccttcaactcatcgaaattgtcagtgtgggttaaaaa 20421331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 26505790 - 26505852
Alignment:
Q  57 attacgccagtttaacaacataatcacataatcgcacataaacgatctaaattgcacaaattc 119  Q
    |||||| |||||||||| |||||||||||||||||||  |||||||||||||| |||||||||    
T  26505790 attacgtcagtttaacagcataatcacataatcgcacggaaacgatctaaattacacaaattc 26505852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 392 - 469
Target Start/End: Original strand, 13402481 - 13402559
Alignment:
Q  392 tttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggggttaaaaa 469  Q
    ||||||||||| ||| ||| | ||||||||||||||| |||| ||||||||| |||||||||| |||||||| ||||||    
T  13402481 tttgattttcaccaagatggacaaagtatttgttaagttgtgtcttcaactcatccaacttgttagtgggggctaaaaa 13402559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 28197127 - 28197011
Alignment:
Q  74 acataatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataa 173  Q
    |||||||||| ||||  ||||||||||||| ||||| |||||||||||| | ||| |||| |   |||||||| |||||||| |||||||||  ||| ||    
T  28197127 acataatcacttaattacacataaacgatccaaattacacaaattcgtcgtcaaa-tacatagtccacaaattcattaaaatgcaacattacatacacaa 28197029  T
Q  174 attcgaacacattacact 191  Q
    |||| |||| ||||||||    
T  28197028 attcaaacatattacact 28197011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 28197239 - 28197190
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaa 127  Q
    |||||||||||| |||||||| |||||||||| |||||||||||| ||||    
T  28197239 aatcacataatcacacataaatgatctaaattacacaaattcgtcgttaa 28197190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 564
Target Start/End: Original strand, 35049643 - 35049705
Alignment:
Q  503 gacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttca-aaaaatataatg 564  Q
    |||||||  || ||| ||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  35049643 gacatgaagtttaaccggatcttgtgcatcttcagacatgtttcacttcacaaaaatataatg 35049705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 33937456 - 33937407
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaa 127  Q
    |||||||||||  ||||||||||||| ||||| |||||||||||| ||||    
T  33937456 aatcacataatgacacataaacgatccaaattacacaaattcgtcgttaa 33937407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 78 - 585
Target Start/End: Original strand, 15892887 - 15893392
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattc 177  Q
    ||||||||||| |||||||||| ||| ||||| || || |||||| ||||||||||||||||||||||| |||||||||||||||||| || | ||||||    
T  15892887 aatcacataattgcacataaacaatccaaattacaaaatttcgtcgttaaattacacataacacaaattcattaaaattcaacattacggaaacaaattc 15892986  T
Q  178 gaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaat 277  Q
     |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||     
T  15892987 aaacacattacactattacacgttaataaatattacacttcaacggatcagacataaagatgtaaaatgttattttcaaccattaacctaaacatgtaaa 15893086  T
Q  278 caacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactat 377  Q
     |   |||| ||||||||| |||||||||||| |||| || |||||| ||||||||| ||| |||||||||| ||||||||||||| || ||||||||||    
T  15893087 ta---tcgctatcatctttgacaagttgtggaaaatacacggtcttccaaaagtcatcttccttatcctcccccaagtccacgcatggcgcatgtactat 15893183  T
Q  378 tacatgagatattctttgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagacctta 476  Q
    |||||||||| |||||||||||||| || |||| ||||||||   ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  15893184 tacatgagatgttctttgattttcaccactatggataaagtagccgttaagttgtgccttcaactcgtccaacttgtcggtggaggttaaaaagacctta 15893283  T
Q  477 atcttctttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagta 576  Q
    |||||||||||| | |||||||||  |||||||  ||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||    
T  15893284 atcttctttctcgcactctcgtatcggacatgaatttcaactggaatttgtgcatcttcagacatgtttcacttcacaaaatttaatggaataataagta 15893383  T
Q  577 tgaaaataa 585  Q
    ||| |||||    
T  15893384 tgagaataa 15893392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 212 - 579
Target Start/End: Original strand, 24619106 - 24619474
Alignment:
Q  212 acacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggata 311  Q
    |||| |||| ||||| |||| ||||||| ||| | ||||||| |||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||    
T  24619106 acacctcaatggatcggacacaaagatgcaaatttttattttcaaccattaacctaaacatgtaatcaacgtcactatcatctttgaaaagttgtggata 24619205  T
Q  312 atatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatga 411  Q
    ||| ||  ||||  ||||||| | ||| |||||||||| |||||||| ||||  ||| ||||| || ||||||||| |||||||||||||| ||||||      
T  24619206 atacacgatctttcaaaagtcctcttccttatcctcccccaagtccatgcatgacacctgtacaatgacatgagatgttctttgattttcaccaatatcg 24619305  T
Q  412 ataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctttctcacgctctcgtattagacatgag 510  Q
    |||||||||  ||||| | |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||| |||||||||    
T  24619306 ataaagtatcagttaacttgtgccttcaacttgtccaacttgtcagcgggggttaaaaagaccttaaccttctttctcatgctctcatatcagacatgag 24619405  T
Q  511 cttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtatga 579  Q
    |||||||| |||  |||||||| | | ||||||||||||||| ||||||||| ||||||||||||||||    
T  24619406 cttcaactcgaatatgtgcatcgttagacatgtttcacttcacaaaatataacggaataacaagtatga 24619474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 133 - 585
Target Start/End: Complemental strand, 30944991 - 30944534
Alignment:
Q  133 acataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcagacat 232  Q
    |||||||||||||| ||| |||||||||||||| |||| ||||| ||| ||||||||||||||||| || |||||||| ||||||||| |||||||||||    
T  30944991 acataacacaaattcatttaaattcaacattacggacacaaatt-gaaaacattacactattacacgttcataaatattacacttcaatggatcagacat 30944893  T
Q  233 aaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtc 332  Q
    ||||||| ||||| ||||||| |||||||||  ||||||||||| ||||||| | ||||||||  | ||||  |||| |||| |  |||||| |||||||    
T  30944892 aaagatgcaaaatgttattttcaaccattaaattaaacatgtaaccaacgtctctatcatcttctataagtgttggaaaatacattgtcttctaaaagtc 30944793  T
Q  333 atattcttt-----atcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttgttaa 427  Q
     | ||| ||     || |||| |||||||||| ||| |||||| | ||  |||||||||| |||||||||||||| ||||||  | |||||||||||| |    
T  30944792 ctcttcctttccttattctccgtcaagtccacacatggcacatatgctcctacatgagatgttctttgattttcaccaatatcgacaaagtatttgttga 30944693  T
Q  428 gt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctttctcacgctctcgtattagacatgagcttcaactggaacttg 526  Q
    || |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||  ||   ||||||  ||||||||||| || |||||| ||    
T  30944692 gttgtgccttcaactcgtccaacttgtcgatgggggttaaaaagaccttaatcttctttcttgcggcttcgtatcggacatgagctttaattggaacctg 30944593  T
Q  527 tgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtatgaaaataa 585  Q
    |||||||| | | |||||||||||   || |||||||| ||||||||||| || |||||    
T  30944592 tgcatcttaagagatgtttcactttgcaacatataatgtaataacaagtacgagaataa 30944534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 85 - 585
Target Start/End: Complemental strand, 29671456 - 29670977
Alignment:
Q  85 taatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacaca 184  Q
    ||||| |||||||| |||| ||||| |||||||||||| |||||| |||||   |||||||| |||||||| |||||||            |||||||||    
T  29671456 taatcacacataaatgatccaaattacacaaattcgtcgttaaat-acacaatccacaaattcattaaaatgcaacatt------------tcgaacaca 29671370  T
Q  185 ttacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtc 284  Q
    ||||||||||| || |||||| |||| ||||||||| |||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||| | ||     
T  29671369 ttacactattatacgttaatatatattacacttcaatggatcaaacataaagatgtaaaaatttatttttaaccattaacctaaaaatgtaatcgatgtt 29671270  T
Q  285 gccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacatga 384  Q
    ||||||||| |  | || ||||||| |||| || |||||| ||      ||| ||||||| ||  |||||| ||| ||| |||| ||||| | |||||||    
T  29671269 gccatcatcatggataacttgtggaaaatacacggtcttccaac-----tat-ctttatcatc--tcaagttcacacatggcacctgtacaaatacatga 29671178  T
Q  385 gatattctttgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttct 483  Q
    ||| |||||||||||||| ||||||| | ||||||| | |||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29671177 gatgttctttgattttcaccaatatggacaaagtatctattaagttgtgccatcaactcgtccaacttgtcagtggggggtaaaaagaccttaatcttct 29671078  T
Q  484 ttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcactt--caaaaaatataatggaataacaagtatgaaa 581  Q
       |||||     ||||   |||||||||||||||  ||||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||| |    
T  29671077 ---tcacgacagagtatcgaacatgagcttcaacttcaacttgtgcatcttcaaacatgtttcacttcacaaaatatataatggaatagcaagtatgaga 29670981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 84 - 356
Target Start/End: Original strand, 5015884 - 5016156
Alignment:
Q  84 ataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aaca 182  Q
    |||||| |||||||||| || ||||| | ||||||| || |||||||||||| |||||||||| |||||||||||||| ||| |||| ||||||| || |    
T  5015884 ataatctcacataaacggtcaaaattacccaaattcatcgttaaattacaca-aacacaaattcattaaaattcaacaatacggacacaaattcggaaaa 5015982  T
Q  183 cattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacg 282  Q
     |||||||| |||||| | |||||  || ||||||||||||||| |||| ||||||  ||| | ||||| | |||||||| |||||| ||| ||||||||    
T  5015983 tattacactgttacacttaaataatgattacacttcaacggatcggacaaaaagatacaaagtgttattctcaaccattaccctaaatatgaaatcaacg 5016082  T
Q  283 tcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtc 356  Q
    || | ||||||||| | ||||||||||||||| ||||||||| | ||||| | ||| |||||||||||||||||    
T  5016083 tcactatcatctttgagaagttgtggataatacacagtcttctagaagtcctcttccttatcctccctcaagtc 5016156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 24618824 - 24618956
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattc 177  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||    
T  24618824 aatcacataatcacacataaacgatccaaattacacaaattcgtcgttaaattacacataacacaaattcattaaaattcaacattacagacacaaattc 24618923  T
Q  178 gaacacattacactattacacattaataaatat 210  Q
    ||||||||||||||||||||| ||||| |||||    
T  24618924 gaacacattacactattacacgttaatgaatat 24618956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 293
Target Start/End: Original strand, 4472689 - 4472876
Alignment:
Q  105 aaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaat 204  Q
    ||||| |||||||||||| |||||| || ||   |||||||| |||||||| || |||||   ||| ||||| ||||||||||||||||||||| |||||    
T  4472689 aaattacacaaattcgtcgttaaat-acgcaatccacaaattcattaaaatgcatcattatgaacacaaatttgaacacattacactattacacgttaat 4472787  T
Q  205 aaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatc 293  Q
    |||||| ||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| |||||||| |||||||||||||| |||||    
T  4472788 aaatattacacttcaatggatcagacacaaagatgtaaaatgttattttcaaccattaaactaaacatctaatcaacgtcgccgtcatc 4472876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 82 - 278
Target Start/End: Complemental strand, 33228587 - 33228392
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaac 181  Q
    |||||||| |||||||||| |  ||||| | ||||||| || |||||||||| | |||||||||| |||||||||||| | ||| |||| ||||||||      
T  33228587 acataatctcacataaacggttcaaattacccaaattcatcgttaaattacata-aacacaaattcattaaaattcaataatacagacacaaattcgaga 33228489  T
Q  182 acattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatc 278  Q
    | |||||  ||||| |  ||||||||||| | |||||||| |||| ||| |||||||||||||| ||||||| |||||| |  | ||||||||||||    
T  33228488 aaattacgatattaaatgttaataaatattagacttcaacagatcggacgtaaagatgtaaaatgttattttcaaccatcacgcgaaacatgtaatc 33228392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 216 - 382
Target Start/End: Complemental strand, 32076434 - 32076268
Alignment:
Q  216 ttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatat 315  Q
    ||||||| ||| || | ||||||||||| | ||||  | |||||||||||||||||||||||||||||||   || ||||| | | |||||| ||||||     
T  32076434 ttcaacgaatcggagaaaaagatgtaaattgttatcctcaaccattaacctaaacatgtaatcaacgtcgttttcgtctttgagatgttgtgaataatac 32076335  T
Q  316 acagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacat 382  Q
    ||||||||| ||||||| | ||| |||| ||||| |||||||||| || |||||| |||||| ||||    
T  32076334 acagtcttctaaaagtcctcttccttattctcccccaagtccacggatggcacatttactatcacat 32076268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 366 - 478
Target Start/End: Complemental strand, 22208915 - 22208802
Alignment:
Q  366 cacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggtt 464  Q
    ||||||||| |  ||||||||| ||||||||||||||  || ||| | |||||||||||||||| ||||||||||||  ||||||||||  |||||||||    
T  22208915 cacatgtacaaacacatgagatgttctttgattttcactaagatggacaaagtatttgttaagttgtgccttcaacttatccaacttgttggtgggggtt 22208816  T
Q  465 aaaaagaccttaat 478  Q
    ||||||||||||||    
T  22208815 aaaaagaccttaat 22208802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 78 - 276
Target Start/End: Original strand, 27187638 - 27187832
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattc 177  Q
    |||||||||||| | ||||||||||| ||||| ||| ||||||||  ||||| |||||   |||||||| ||||||||  |||||| |  ||| ||| ||    
T  27187638 aatcacataatcacgcataaacgatccaaattacactaattcgtcgctaaat-acacaatccacaaattcattaaaatgtaacattgcgaacacaaagtc 27187736  T
Q  178 gaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaa 276  Q
     |||||||||||||| ||||| ||||   |||| | |||| || |||||  ||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  27187737 aaacacattacactactacacgttaa---atattagactttaatggatcgaacataaagacgtaaaatgttattttcaaccattaacctaaacgtgtaa 27187832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 82 - 356
Target Start/End: Complemental strand, 5075870 - 5075604
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aa 180  Q
    |||||||  |||||||||| || ||||| | ||||||| || |||||||||| | |||| ||||| |||||||||||||| |||  ||| ||||||| ||    
T  5075870 acataatatcacataaacggtcaaaattacccaaattcatcgttaaattacata-aacataaattcattaaaattcaacaatacgaacacaaattcggaa 5075772  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     ||||||||||        | |||||  || ||||||||  ||||| |||| ||||||  ||  | ||||| | |||||||| |||||||||| ||||||    
T  5075771 aacattacact--------taaataatgattacacttcagtggatcggacaaaaagatacaacttgttattctcaaccattaccctaaacatgaaatcaa 5075680  T
Q  281 cgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtc 356  Q
    |||||| ||||||||| | ||||||||||||||| || || ||| | ||||||| ||| || ||||||| ||||||    
T  5075679 cgtcgctatcatctttgagaagttgtggataatacacggttttccagaagtcatcttccttctcctcccccaagtc 5075604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 392 - 577
Target Start/End: Original strand, 27675562 - 27675742
Alignment:
Q  392 tttgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctttctcac 490  Q
    ||||||||||| ||| ||| | |||||||||||||||| ||| ||||||||  |||||||||||  || |||||||||  ||||||||  || || | |     
T  27675562 tttgattttcaccaagatggagaaagtatttgttaagttgtgtcttcaacttatccaacttgtcgttgagggttaaaagtaccttaattgtccttttgaa 27675661  T
Q  491 gctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtat 577  Q
    | |   ||||  ||||||||||||||||      |||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  27675662 ggtggagtatcggacatgagcttcaact------tgtgcatcttcaaacatgtttcacttcacaaaattttatggaataacaagtat 27675742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 515 - 579
Target Start/End: Complemental strand, 32076136 - 32076073
Alignment:
Q  515 aactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtatga 579  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||    
T  32076136 aactggatcttgtgcatcttcagacatgtttcacttcacaaaatataat-gaaaaacaagtatga 32076073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 15892638 - 15892708
Alignment:
Q  57 attacgccagtttaacaacataatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaa 127  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||||| ||||  ||| |||||||| ||||    
T  15892638 attacgccagtttaacaatctaatcacataatcacacataaacgatcaaaatcacactaattcgtcgttaa 15892708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 27675397 - 27675464
Alignment:
Q  226 cagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatc 293  Q
    |||||| ||||||||||  ||||||||| |||||||||||||||||| || || || |||||||||||    
T  27675397 cagacacaaagatgtaacttattattttcaaccattaacctaaacatttattctacatcgccatcatc 27675464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 32076509 - 32076438
Alignment:
Q  126 aaattacacataa-cacaaatttattaaaattcaacattactgacataaattcgaacacattacactattac 196  Q
    ||||||||||||| |||||||| ||| | |||||||||||| |||| |||||| ||||||||| ||||||||    
T  32076509 aaattacacataaacacaaattcatttatattcaacattacggacacaaattcaaacacattagactattac 32076438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 44015537 - 44015608
Alignment:
Q  207 atatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatc 278  Q
    |||| ||||||||  ||| | |||| ||||||||||||| ||||||| |||||| |||||||||||||||||    
T  44015537 atattacacttcagtggaccggacacaaagatgtaaaattttattttcaaccatcaacctaaacatgtaatc 44015608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 9602067 - 9601989
Alignment:
Q  392 tttgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaa 469  Q
    ||||||||||||||| |||||  |||||||  |||||| |||  |||||||| |||||||| |||||||||||||||||    
T  9602067 tttgattttcatcaacatgaacgaagtattgattaagttgtgttttcaactcatccaacttatcagtgggggttaaaaa 9601989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 6662292 - 6662378
Alignment:
Q  394 tgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatc 479  Q
    ||||||||| ||| ||| | |||||||||||||||| |  |||||||||| ||||||||||| |   |||||||||| |||||||||    
T  6662292 tgattttcaccaagatggacaaagtatttgttaagttgccccttcaactcatccaacttgtctgcatgggttaaaaaaaccttaatc 6662378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 6742694 - 6742780
Alignment:
Q  394 tgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatc 479  Q
    ||||||||| ||| ||| | |||||||||||||||| |  |||||||||| ||||||||||| |   |||||||||| |||||||||    
T  6742694 tgattttcaccaagatggacaaagtatttgttaagttgccccttcaactcatccaacttgtctgcatgggttaaaaaaaccttaatc 6742780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 129 - 585
Target Start/End: Complemental strand, 41784975 - 41784513
Alignment:
Q  129 ttacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcag 228  Q
    |||||||||||||||||| ||| |||||||||||||  |||| ||||||||||||||||||||||||||| || |||||||| ||||||||| |||||||    
T  41784975 ttacacataacacaaattcatttaaattcaacattaaggacacaaattcgaacacattacactattacacgttcataaatattacacttcaatggatcag 41784876  T
Q  229 acataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaa 328  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| | ||||| ||  | ||||  |||| |||| |  |||||| |||    
T  41784875 acataaagatgtaaaatgttattttcaaccattaaactaaacatgtaatcaacgtctctatcatattcgataagtgttggaaaatacattgtcttctaaa 41784776  T
Q  329 agtcat-----attctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttg 423  Q
    |||| |      ||| |||| |||| |||||||||| ||| |||||| | ||  |||||||||| |||||||||||||| ||||||  | ||||||||||    
T  41784775 agtccttttcctttccttattctccgtcaagtccactcatggcacatatgcttctacatgagatgttctttgattttcaccaatatcgacaaagtatttg 41784676  T
Q  424 ttaag-tgtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctttctcacgctctcgtattagacatgagcttcaactggaa 522  Q
    || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||   ||||||| ||||||||||| || |||||    
T  41784675 ttgagttgtgccttcaactcgtccaacttgtcggtgggggttaaaaagaccttaatcttctttcccgcggcttcgtattggacatgagctttaattggaa 41784576  T
Q  523 cttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtatgaaaataa 585  Q
      |||||||||| | | |||||||||||   ||||||||||||||||||||||| || |||||    
T  41784575 tctgtgcatcttgagagatgtttcactttgcaaaatataatggaataacaagtacgagaataa 41784513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 113 - 382
Target Start/End: Complemental strand, 18486658 - 18486393
Alignment:
Q  113 caaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aacacattacactattacacattaataaatatc 211  Q
    ||||||| || |||||||||| | |||||||||| |||||||||||||| ||| |||| ||||||| || ||||||||||||||||| | |||||||||     
T  18486658 caaattcatcgttaaattacata-aacacaaattcattaaaattcaacaatacagacacaaattcggaaaacattacactattacacttaaataaatatt 18486560  T
Q  212 acacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggata 311  Q
    ||||||||||||||| |||| ||||||  ||| ||||||| | |||||||||||||||||||||||||||||||| ||||||||| | ||   |||||||    
T  18486559 acacttcaacggatc-gacaaaaagatacaaagtattattctcaaccattaacctaaacatgtaatcaacgtcgctatcatctttgagaa---gtggata 18486464  T
Q  312 atatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacat 382  Q
    ||| || |||||| | ||||| | ||| |||| ||||| ||||||||| | | |||||| |||||| ||||    
T  18486463 atacacggtcttccagaagtcttcttccttattctcccccaagtccacacctggcacatttactatgacat 18486393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 137 - 461
Target Start/End: Original strand, 50334565 - 50334883
Alignment:
Q  137 aacacaaatttattaaaattcaacattactgacataaattcgaaca-cattacacta------ttacacattaataaatatcacacttcaacggatcaga 229  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||| | ||||||||||      |||||||||||||||||| |||||||||| |||||||    
T  50334565 aacacaaattcattaaaattcaacaatacagacacaaattcgaaaaacattacactattactattacacattaataaatataacacttcaacagatcaga 50334664  T
Q  230 cataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaa 329  Q
    |||||||||||||||  ||||||| |||||| |  | |||||||||||||||||| | ||||||||| || ||||||||| |||| || |||            
T  50334665 cataaagatgtaaaaagttattttcaaccatcacgcgaaacatgtaatcaacgtcactatcatctttgactagttgtggaaaatacacggtc-------- 50334756  T
Q  330 gtcatattctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttgttaag- 428  Q
          ||| |||||||||| |||||| |||||||| || ||||||| ||||| | || |||| ||||||  | |||||||||||||| | | || |||     
T  50334757 ------ttccttatcctcccccaagtctacgcatagaacttgtactactacataatatgttctgtgatttgaaccaatatgaataaagaagtcgtcaagt 50334850  T
Q  429 tgtgccttcaactcgtccaacttgtcagtgggg 461  Q
    | ||| |||||||||||||||||||||||||||    
T  50334851 tttgctttcaactcgtccaacttgtcagtgggg 50334883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 82 - 314
Target Start/End: Complemental strand, 1938970 - 1938738
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aa 180  Q
    |||||||| ||||||||||  | ||||| | ||||||| || ||||||||||   |||||||||| |||||||||||||| ||| |||| ||||||| ||    
T  1938970 acataatctcacataaacggccaaaattactcaaattcatcgttaaattacatc-aacacaaattcattaaaattcaacaatacagacacaaattcggaa 1938872  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     |||||||||||||| |  ||||||||||| ||||||||| ||||| |||||||||||||||||  ||||||| |||||| |  | ||||||||||||||    
T  1938871 aacattacactattatatgttaataaatattacacttcaatggatcggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaa 1938772  T
Q  281 cgtcgccatcatctttaacaagttgtggataata 314  Q
    |||| | ||||||||| || ||||||||| ||||    
T  1938771 cgtcactatcatctttgactagttgtggaaaata 1938738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 113 - 324
Target Start/End: Original strand, 156573 - 156784
Alignment:
Q  113 caaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aacacattacactattacacattaataaatatc 211  Q
    ||||||| || |||||||||| | |||||||||| |||||||||||||| ||| |||| ||||||| || ||||| ||||||||| | | |||||  ||     
T  156573 caaattcatcgttaaattacata-aacacaaattcattaaaattcaacaatacggacacaaattcggaaaacatttcactattacccttaaataatgatt 156671  T
Q  212 acacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggata 311  Q
    ||||||||||||||| |||| ||||||  ||| | ||||| | |||||||| |||||||||| |||||||||||| ||||||||| | ||||||||||||    
T  156672 acacttcaacggatcggacaaaaagatacaaagtgttattctcaaccattaccctaaacatgaaatcaacgtcgctatcatctttgagaagttgtggata 156771  T
Q  312 atatacagtcttc 324  Q
    ||| || ||||||    
T  156772 atacacggtcttc 156784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 191 - 577
Target Start/End: Complemental strand, 5318255 - 5317867
Alignment:
Q  191 tattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattattttt-aaccattaacctaaacatgtaatcaacgtcgccat 289  Q
    |||| ||||| |||| |||| ||||||||| ||| | || | |||||| | |||| |||||||| |||||| ||||||||||||||| | | ||||||||    
T  5318255 tattgcacatcaatacatattacacttcaatggagctgaaacaaagatatcaaatgttatttttcaaccatcaacctaaacatgtaaactatgtcgccat 5318156  T
Q  290 catctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacatgagatat 389  Q
    |||| |  | |||||||||| |||| |   ||||| ||  ||| |  ||||||||| || |||  |  || |||  ||| ||||| | ||||||||||||    
T  5318155 catcatggataagttgtggaaaatacatgatcttccaactgtcttcatctttatccgccgtcagattgacacatgacacttgtacaaatacatgagatat 5318056  T
Q  390 tctttgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctttctc 488  Q
    ||||||||||||  ||| ||| | ||| ||| |||||||| ||||||||||||| ||||| || || |||| |||||||||  |||||||||||||  |     
T  5318055 tctttgattttcgccaagatggacaaattatctgttaagttgtgccttcaactcatccaaattttcggtggaggttaaaaaagccttaatcttcttcttg 5317956  T
Q  489 acgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtat 577  Q
    | |     ||||  |||||||||||||||   ||||| |||||||| | |||||||||| |||| ||||  | ||||||||||||||||    
T  5317955 aaggcaaagtatcggacatgagcttcaacgtcaacttctgcatcttgagacatgtttcatttcacaaaagtttatggaataacaagtat 5317867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 202 - 361
Target Start/End: Original strand, 50006869 - 50007028
Alignment:
Q  202 aataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaa 301  Q
    ||||||||| ||||||||||||||| |||||||||||||||||  ||||||| |||||| |    |||| |||||||||||||   ||||||||| || |    
T  50006869 aataaatattacacttcaacggatcggacataaagatgtaaaaggttattttcaaccatcacgggaaacttgtaatcaacgtcagtatcatctttgacta 50006968  T
Q  302 gttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgc 361  Q
    |||||||| |||| || || ||| || | |||| ||| |||||||||| ||| |||||||    
T  50006969 gttgtggaaaatacacggttttccaacaatcatcttccttatcctcccccaaatccacgc 50007028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 378 - 550
Target Start/End: Complemental strand, 21178400 - 21178227
Alignment:
Q  378 tacatgagatattctttgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagacctta 476  Q
    |||||||||| |||||||||||||| ||| ||| | ||| ||| |||||||| ||||||| ||||| |||||||||||  | ||||| ||||||||||||    
T  21178400 tacatgagatgttctttgattttcaccaagatggacaaaatatctgttaagttgtgcctttaactcatccaacttgtcgataggggtcaaaaagacctta 21178301  T
Q  477 atcttctttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcactt 550  Q
    ||| ||||  ||||| |   |||| | ||||||| || ||||  |||||||| ||||||| |||| ||||||||    
T  21178300 atcgtcttcttcacggtggagtatcaaacatgagttttaacttcaacttgtgtatcttcagacatctttcactt 21178227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 324
Target Start/End: Complemental strand, 18777869 - 18777689
Alignment:
Q  142 aaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgta 241  Q
    ||||| |||||||| |||||||||  ||| | ||||||||| |||||||| |||||| |||||| |||| ||| ||||| ||| |||| | |||||||||    
T  18777869 aaattcattaaaatgcaacattacaaacacatattcgaacatattacacttttacacgttaatacatattacatttcaatggagcagaaacaaagatgta 18777770  T
Q  242 aaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttc 324  Q
    |  | ||||||  ||||||||  |||||||||||||| |||| ||||| ||| | || || |||||||  ||| |||||||||    
T  18777769 a--tgttatttgcaaccattagtctaaacatgtaatctacgttgccattatcatcaataacttgtggaatatacacagtcttc 18777689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 233 - 479
Target Start/End: Complemental strand, 54254396 - 54254149
Alignment:
Q  233 aaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtc 332  Q
    |||||||||  |||||||||| |||||| |||| |||||||||||| || ||| ||||||| |  | || || || | |||| | ||||||| ||  |||    
T  54254396 aaagatgtatgatattattttaaaccatcaaccaaaacatgtaatctacatcgtcatcatcatggataacttttgaaaaataaatagtcttccaactgtc 54254297  T
Q  333 atattctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttgttaagt-gt 431  Q
     |  ||||||||| ||  ||  | ||| |||  ||||||||| | |||||||||| || |||||| ||||  || ||| ||||| |||||||||||| ||    
T  54254296 ttcatctttatccgccgccagattcacccatgacacatgtacaaatacatgagatgttatttgatcttcactaagatggataaaatatttgttaagttgt 54254197  T
Q  432 gccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatc 479  Q
    | ||||||||| | ||||| ||| |||||||||||||| |||||||||    
T  54254196 gtcttcaactcatgcaactcgtcggtgggggttaaaaaaaccttaatc 54254149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 5534103 - 5534177
Alignment:
Q  137 aacacaaatttattaaaattcaacattactgacataaa-ttcgaacacattacactattacacattaataaatat 210  Q
    |||||||||| |||||||||||||| |||||||| ||| || ||| ||||||||||||||||| |||||||||||    
T  5534103 aacacaaattcattaaaattcaacaatactgacacaaatttagaaaacattacactattacacgttaataaatat 5534177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 21178580 - 21178478
Alignment:
Q  191 tattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattattttt-aaccattaacctaaacatgtaatcaacgtcgccat 289  Q
    |||||||| |||||| |||| ||||||||| ||| | |||| |||||| |||||| |||||||| |||||||||| ||||||||||||| | |||| |||    
T  21178580 tattacacgttaatacatattacacttcaatggagcggacacaaagat-taaaatgttatttttcaaccattaacttaaacatgtaatctatgtcgtcat 21178482  T
Q  290 catc 293  Q
    ||||    
T  21178481 catc 21178478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 41420206 - 41420104
Alignment:
Q  137 aacacaaatttattaaaattcaacattactgacataaattc-gaacacattacactattacacattaataaatatcacacttcaacggatcagacataaa 235  Q
    |||||||||| |||||||||||||| ||  |||| |||||| ||| ||||||||||||||||| | |||||  || |||||||| |||||| |||| |||    
T  41420206 aacacaaattcattaaaattcaacaatatggacacaaattcagaaaacattacactattacacttaaataatgattacacttcagcggatcggacaaaaa 41420107  T
Q  236 gat 238  Q
    |||    
T  41420106 gat 41420104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 41785131 - 41785086
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtca 123  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||    
T  41785131 aatcacataatcacacataaacgatccaaattacacaaattcgtca 41785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 564
Target Start/End: Original strand, 50007181 - 50007223
Alignment:
Q  523 cttgtgcatcttcaaacatgtttcacttca-aaaaatataatg 564  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  50007181 cttgtgcatcttcagacatgtttcacttcacaaaaatataatg 50007223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 564
Target Start/End: Original strand, 50334937 - 50334987
Alignment:
Q  515 aactggaacttgtgcatcttcaaacatgtttcacttca-aaaaatataatg 564  Q
    ||| ||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  50334937 aaccggatcttgtgcatcttcagacatgtttcacttcacaaaaatataatg 50334987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 577
Target Start/End: Complemental strand, 54254107 - 54254051
Alignment:
Q  521 aacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtat 577  Q
    |||||||||||||||| ||| |||| |||||| ||||  | ||||||||||||||||    
T  54254107 aacttgtgcatcttcagacaagttttacttcacaaaagtttatggaataacaagtat 54254051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 336 - 585
Target Start/End: Complemental strand, 30531215 - 30530965
Alignment:
Q  336 ttctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttgttaagt-gtgcc 434  Q
    ||||||||| |||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||| ||||| || ||||||||| |||||    
T  30531215 ttctttatcatcccccaagtccacgcatggcacttgtactattacatgagatgttctttgattttcatcaatatggataaaatagttgttaagttgtgcc 30531116  T
Q  435 ttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatctt 534  Q
    |||||||| ||||||||||| ||||| |||||||||||||||| ||||||| |||| |||||||||  ||||||||||| |||| |||||||||||||||    
T  30531115 ttcaactcatccaacttgtcggtgggagttaaaaagaccttaaccttctttatcacactctcgtatcggacatgagctttaacttgaacttgtgcatctt 30531016  T
Q  535 caaacatgtttcacttcaaaaaatataatggaataacaagtatgaaaataa 585  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  30531015 caaaaatgtttcacttcacaaaatataatggaataacaagtatgagaataa 30530965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 137 - 564
Target Start/End: Complemental strand, 27934385 - 27933956
Alignment:
Q  137 aacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatc--acacttcaacggatcagacataa 234  Q
    |||||||||| |||||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||||||||   ||||||||  |||||||||||||    
T  27934385 aacacaaattcattaaaattcaacaatacagacacaaatttgaacacattacactattacacattaataaatatattacacttcacgggatcagacataa 27934286  T
Q  235 agatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcat 334  Q
    ||||||||| | ||||||| |||||| |  |||||||||||| ||||||||| ||||||||  |||||||||||| ||||||  |||||| ||||||| |    
T  27934285 agatgtaaagtgttattttcaaccatcacgctaaacatgtaagcaacgtcgctatcatcttcgacaagttgtggaaaatatatggtcttccaaaagtcct 27934186  T
Q  335 attctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgc 433  Q
     ||| ||||    || ||||| ||||| |  ||||| ||||| ||||| |||| ||||||||||| || ||| ||| |||||||||  || ||| |||||    
T  27934185 tttccttat----ccccaagttcacgcctgacacatttactactacatcagatgttctttgatttgcaccaacatggataaagtatccgtcaagttgtgc 27934090  T
Q  434 cttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctttctcacgctctcgtattagacatgagcttcaactggaacttgtgca--- 530  Q
    |||||||||||| |||||||| ||| |||||| ||||| ||||| | ||||| |||||   || ||   ||||||| ||||||||||| ||||||||       
T  27934089 cttcaactcgtcgaacttgtcggtgagggttataaagaacttaaccctctttttcacgaattcataaaggacatgaacttcaactggatcttgtgcatct 27933990  T
Q  531 tcttcaaacatgtttcacttcaaaaaatataatg 564  Q
    |||||| ||||||||||||||| |||||||||||    
T  27933989 tcttcagacatgtttcacttcacaaaatataatg 27933956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 126 - 296
Target Start/End: Complemental strand, 30531385 - 30531215
Alignment:
Q  126 aaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggat 225  Q
    ||||||||||| ||||||||| ||||||||||||||||||  |||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||    
T  30531385 aaattacacatgacacaaattcattaaaattcaacattacaaacataaattcaaacacattacactattacacgtaaataaatattacacttcaacggat 30531286  T
Q  226 cagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatcttt 296  Q
    | |||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||    
T  30531285 cggacataaagatgtaaaatgttattttcaaccattaacctaaacatgtaatcaacatcgctatcatcttt 30531215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 126 - 417
Target Start/End: Original strand, 20514124 - 20514416
Alignment:
Q  126 aaattacacataa-cacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacgga 224  Q
    ||||||||||||| |||||||| |||||||||||||| |||  ||| ||||||||||| |||||  |||||||| ||||||||||| ||||||||| |||    
T  20514124 aaattacacataaacacaaattcattaaaattcaacaatacatacacaaattcgaacaaattacgatattacacgttaataaatattacacttcaatgga 20514223  T
Q  225 tcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttc 324  Q
    || ||| |||| ||||||||  ||||||| |||||| |  | |||||| ||||||||||||| ||||||||| || ||||||||| || | || ||||||    
T  20514224 tctgacgtaaatatgtaaaaggttattttcaaccatcacgcgaaacatataatcaacgtcgctatcatctttgactagttgtggaaaaaacacggtcttc 20514323  T
Q  325 aaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaag 417  Q
     ||  ||| | ||| |||||||||| ||||||||||| | | || ||||||| ||||| | || |||| ||||||  | ||||||| ||||||    
T  20514324 caacggtcctcttcattatcctcccccaagtccacgcctggtacttgtactactacataatatgttctgtgatttgaaccaatatggataaag 20514416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 137 - 358
Target Start/End: Complemental strand, 53768438 - 53768216
Alignment:
Q  137 aacacaaatttattaaaattcaacattactgacataaattcg-aacacattacactattacacattaataaatatcacacttcaacggatcagacataaa 235  Q
    |||||||||| |||||||||||||| |||  ||| ||||||| || ||||||||||||||||| | |||||  || ||| ||||||||||| |||| |||    
T  53768438 aacacaaattcattaaaattcaacaatacaaacacaaattcggaaaacattacactattacacttaaataatgattacagttcaacggatcggacaaaaa 53768339  T
Q  236 gatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcata 335  Q
    |||  ||| | ||||| | |||||||| ||| |||||| |||||||||| | ||||||||| | ||||||||||||||| |  |||||| | ||||| |     
T  53768338 gatacaaagtgttattctcaaccattacccttaacatgaaatcaacgtcactatcatctttgagaagttgtggataatacaatgtcttccataagtcctc 53768239  T
Q  336 ttctttatcctccctcaagtcca 358  Q
    ||| |||||||||| ||||||||    
T  53768238 ttccttatcctcccccaagtcca 53768216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 23953464 - 23953582
Alignment:
Q  175 ttcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgt 274  Q
    |||||||| ||||||||||||||| | |||| | || ||||||||| ||| |||||| |||||||||| |||||||||| || |||  ||||||||||||    
T  23953464 ttcgaacatattacactattacacgtcaatacaaattacacttcaatggagcagacacaaagatgtaacatattattttcaatcatcgacctaaacatgt 23953563  T
Q  275 aatcaacgtcgccatcatc 293  Q
    |||| || |||||||||||    
T  23953564 aatctacatcgccatcatc 23953582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 9193759 - 9193679
Alignment:
Q  212 acacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcat 292  Q
    ||||||||| | |||||| | ||||||||||||| ||||||| ||| ||||||| |||||||||||||| |||||||||||    
T  9193759 acacttcaatgtatcagatacaaagatgtaaaattttattttcaacaattaaccaaaacatgtaatcaaggtcgccatcat 9193679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 32125083 - 32125157
Alignment:
Q  91 cacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattac 165  Q
    ||||||||||| | ||||| |||||||||||| ||||| |||||||||| |||||| ||||||||||||| ||||    
T  32125083 cacataaacgaaccaaattacacaaattcgtcgttaaactacacataacccaaattgattaaaattcaactttac 32125157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 6804329 - 6804449
Alignment:
Q  175 ttcgaacacattacactattacacattaataaatat--cacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacat 272  Q
    |||||||| ||||| ||||||||||| |||| ||||  |||||||||| ||| |  ||| |||||||||| || || |||| || ||| |||||||||||    
T  6804329 ttcgaacatattaccctattacacatcaatacatattacacacttcaatggagcgaacacaaagatgtaagatcttgttttcaatcatcaacctaaacat 6804428  T
Q  273 gtaatcaacgtcgccatcatc 293  Q
    |||||| || |||||||||||    
T  6804429 gtaatccacatcgccatcatc 6804449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 27935032 - 27934978
Alignment:
Q  65 agtttaacaacataatcacataatcgcacataaacgatctaaattgcacaaattc 119  Q
    |||||||||||||||||||||||||||||  |||||||| ||||| |||||||||    
T  27935032 agtttaacaacataatcacataatcgcacgaaaacgatccaaattacacaaattc 27934978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 49435963 - 49436029
Alignment:
Q  227 agacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatc 293  Q
    ||||| |||||||||| ||||| |||| |||||| | |||||||||||||||||||||| |||||||    
T  49435963 agacacaaagatgtaagatattgttttcaaccatcagcctaaacatgtaatcaacgtcgtcatcatc 49436029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 564
Target Start/End: Original strand, 20514512 - 20514561
Alignment:
Q  515 aactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatg 564  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||||    
T  20514512 aactggatcttgtgcatcttcagacatgtttcacttcacaaaatataatg 20514561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 32124865 - 32124938
Alignment:
Q  47 attgaatcggattacgccagtttaacaacataatcacataatcgcacataaacgatct-aaattgcacaaattc 119  Q
    |||||| || |||||| |||||||||||||||||||| |||||||||||||| ||| | ||||| |||||||||    
T  32124865 attgaaccgaattacgtcagtttaacaacataatcacgtaatcgcacataaatgatttcaaattacacaaattc 32124938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 504 - 577
Target Start/End: Original strand, 49436242 - 49436315
Alignment:
Q  504 acatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtat 577  Q
    |||||||||||||||  |||||||||||||| | ||||||||||||||| ||||  |  |||||||||||||||    
T  49436242 acatgagcttcaactttaacttgtgcatctttagacatgtttcacttcacaaaagtttttggaataacaagtat 49436315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 293
Target Start/End: Original strand, 51409849 - 51409993
Alignment:
Q  149 ttaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatatt 248  Q
    ||||||| |||||||||  | | ||||||||||| ||||| || |||||| | |||| |||| |||||| || ||| | |||| || ||| |||||| ||    
T  51409849 ttaaaatgcaacattacataaaaaaattcgaacatattacgctgttacacgtcaatacatattacactttaatggagcggacacaacgatataaaatgtt 51409948  T
Q  249 atttttaaccattaacctaaacatgtaatcaacgtcgccatcatc 293  Q
    ||||| |  ||||| ||||||||||||||| || ||| |||||||    
T  51409949 attttcattcattatcctaaacatgtaatctacatcgtcatcatc 51409993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 30930111 - 30930213
Alignment:
Q  137 aacacaaatttattaaaattcaacattactgacataaattcg-aacacattacactattacacattaataaatatcacacttcaacggatcagacataaa 235  Q
    |||||||||| |||||||||||||| |||  ||| ||||||| || | ||||||||||||||| | |||||  || ||||||||||| ||| |||| |||    
T  30930111 aacacaaattcattaaaattcaacaatacgaacacaaattcggaaaatattacactattacacttaaataatgattacacttcaacgaatcggacaaaaa 30930210  T
Q  236 gat 238  Q
    |||    
T  30930211 gat 30930213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 577
Target Start/End: Original strand, 30540616 - 30540672
Alignment:
Q  521 aacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtat 577  Q
    |||||||||||||||| ||||||||||||||| ||| | | |||| |||||||||||    
T  30540616 aacttgtgcatcttcacacatgtttcacttcacaaagttttatgggataacaagtat 30540672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 9194054 - 9194007
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaat 129  Q
    |||||||| ||||||| ||||||||||| |||||||||||| ||||||    
T  9194054 acataatcacacataatcgatctaaattacacaaattcgtcgttaaat 9194007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 564
Target Start/End: Original strand, 30930259 - 30930301
Alignment:
Q  523 cttgtgcatcttcaaacatgtttcacttca-aaaaatataatg 564  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  30930259 cttgtgcatcttcagacatgtttcacttcacaaaaatataatg 30930301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 30531599 - 30531562
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattc 119  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  30531599 acataatcgcacataaacgatccaaattacacaaattc 30531562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 469
Target Start/End: Original strand, 51410081 - 51410170
Alignment:
Q  381 atgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggggttaaaaa 469  Q
    ||||||| ||||||||| || | ||| ||| ||||| ||||||||||| ||| |||||||||  ||||| |||||||||  |||||||||    
T  51410081 atgagatgttctttgatatttaccaagatggataaactatttgttaagttgtaccttcaacttatccaaattgtcagtgtaggttaaaaa 51410170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 9193816 - 9193756
Alignment:
Q  138 acacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacac 198  Q
    ||||| ||| |||||||| ||| ||||| || | ||||||||||| |||||||||||||||    
T  9193816 acacagattcattaaaatgcaagattacagatacaaattcgaacatattacactattacac 9193756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 91 - 585
Target Start/End: Original strand, 38810198 - 38810667
Alignment:
Q  91 cacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacac 190  Q
    ||||||||||||  ||||| ||||||||  || ||||||||||||||||||||||| |||||||||||||||| | | || |||||||||||||||||||    
T  38810198 cacataaacgattcaaattacacaaatttatcgttaaattacacataacacaaattcattaaaattcaacattgcaggcacaaattcgaacacattacac 38810297  T
Q  191 tattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatc 290  Q
    |||||||  ||| | ||||| ||||||||| ||||| |||||||||        | ||||||| |||||||||||||||||||||||||| || || |||    
T  38810298 tattacatgttactcaatattacacttcaatggatcggacataaag--------tgttattttgaaccattaacctaaacatgtaatcaatgttgctatc 38810389  T
Q  291 atctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacatgagatatt 390  Q
     | ||| | | ||| |||| |||| || |||||| |||||| |||||| || | ||||| ||| || |||||||                 |||||| ||    
T  38810390 gtttttgatacgttatggaaaatacacggtcttctaaaagttatattccttgtgctccc-caaatctacgcata-----------------tgagatgtt 38810471  T
Q  391 ctttgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctttctca 489  Q
    |||||||||||| ||||||| ||||||||| |||||||| |||| ||||||||||| | |||||| ||||||||||||||||||||||| |||||| |||    
T  38810472 ctttgattttcaccaatatggataaagtatatgttaagttgtgctttcaactcgtcaaccttgtcggtgggggttaaaaagaccttaatattctttttca 38810571  T
Q  490 cgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtatgaaaataa 585  Q
    ||    |||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||| |||||    
T  38810572 cggcgacgtatcggacatgagcttcaattggaacttgtgcatcttcagacatgtttcacttcacacaatataatgaaataacaagtatgagaataa 38810667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 82 - 457
Target Start/End: Original strand, 30703499 - 30703875
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aa 180  Q
    |||||||| |||||||||| || ||||| | ||||||| || ||||||||||   |||||||||| |||||||||||||| ||| |||| ||||| | ||    
T  30703499 acataatctcacataaacggtcaaaattacccaaattcatcgttaaattacatc-aacacaaattcattaaaattcaacaatacggacacaaattaggaa 30703597  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||| || ||| |  | ||||||||||||||    
T  30703598 aacattacactattgcacattaataaatattacacttcaacggatcagacataaagatgtaaaaggttattttcaaacatcacgcgaaacatgtaatcaa 30703697  T
Q  281 cgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattac 380  Q
    |||| | ||||||||| || ||||||||| |||| || |||||| ||   || | ||| |||||||||| ||||||||||| | | || ||||||| ||     
T  30703698 cgtcactatcatctttgactagttgtggaaaatacacggtcttccaacgatcctcttccttatcctcccccaagtccacgcttggaacttgtactactat 30703797  T
Q  381 atgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagt 457  Q
    || | || |||| ||||||  | ||||||| |||||| | |  | ||| | ||||||||||||||||||||| |||||    
T  30703798 ataatatgttctgtgatttgaaccaatatggataaagaagtcatcaagttttgccttcaactcgtccaacttatcagt 30703875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 82 - 461
Target Start/End: Complemental strand, 25818776 - 25818398
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaac 181  Q
    |||||||| ||| ||||| ||| ||||| | ||||||| || |||||||||| | |||||||||| |||||||||||| | ||| |||| ||||||||||    
T  25818776 acataatctcacgtaaactatcaaaattacccaaattcatcgttaaattacata-aacacaaattcattaaaattcaataatacggacacaaattcgaac 25818678  T
Q  182 acattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaac 281  Q
    | |||||  ||||| || ||||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||| |  | |||||||||||||||    
T  25818677 aaattacgatattaaacgttaataaatatcacacttcaacggatcggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaac 25818578  T
Q  282 gtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattaca 381  Q
    ||||| ||||||||| || ||||||||| |||| || |||||| ||  | | | ||| |||||||||| |||| |||||  |  ||| ||||||| ||||    
T  25818577 gtcgctatcatctttgactagttgtggaaaatacacggtcttccaacggccctcttccttatcctcccccaag-ccacgactgacacttgtactactaca 25818479  T
Q  382 tgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggg 461  Q
    | | || |||| ||||||  | ||||||| |||||| | |||| ||| | | |||||||||| ||||||||||| ||||||    
T  25818478 taacatgttctgtgatttgaaccaatatggataaagaagttgtcaagttttaccttcaactcatccaacttgtcggtgggg 25818398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 113 - 382
Target Start/End: Original strand, 7318226 - 7318494
Alignment:
Q  113 caaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatca 212  Q
    ||||||| || |||||||||| | ||||||||||  ||||||||||||| ||| |||| ||||| ||||| ||||||||||||||| ||||||||||| |    
T  7318226 caaattcatcgttaaattacata-aacacaaattctttaaaattcaacaatacggacacaaatttgaacaaattacactattacacgttaataaatatta 7318324  T
Q  213 cacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataa 312  Q
    |||||||||  ||| ||||||||||||||||   ||||||| |||||| |  ||||||| |||| ||||||||| ||||||||  | |||||||||| ||    
T  7318325 cacttcaacatatctgacataaagatgtaaagcgttattttcaaccatcacgctaaacacgtaagcaacgtcgctatcatcttcgagaagttgtggaaaa 7318424  T
Q  313 tatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacat 382  Q
    || ||||||||| ||||||  | ||| ||||||||||  | |||||||| | | |||| |||||||||||    
T  7318425 tacacagtcttccaaaagttctcttccttatcctcccctaggtccacgcctgggacatttactattacat 7318494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 137 - 377
Target Start/End: Complemental strand, 23943230 - 23942989
Alignment:
Q  137 aacacaaatttattaaaattcaacattactgacataaattcgaaca-cattacactattacacattaataaatatcacacttcaacggatcagacataaa 235  Q
    |||| |||||||||||||||||||| ||| |||| ||||||||| | |||||||||||||||| | |||||  || ||||||||||||||| |||| |||    
T  23943230 aacaaaaatttattaaaattcaacaatacggacacaaattcgaaaaacattacactattacacttaaataatgattacacttcaacggatcggacaaaaa 23943131  T
Q  236 gatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcata 335  Q
    |||  ||| | ||||| | |||||||| |||||||||| |||||||||||| ||||||||| | ||||||||||||||| || |||||| | ||||| |     
T  23943130 gatacaaagtgttattctcaaccattaccctaaacatgaaatcaacgtcgctatcatctttgagaagttgtggataatacacggtcttccagaagtcctc 23943031  T
Q  336 ttctttatcctccctcaagtccacgcatagcacatgtactat 377  Q
    ||| |||||||||| |||||||| || | |||||| ||||||    
T  23943030 ttccttatcctcccccaagtccaggcctggcacatttactat 23942989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 82 - 361
Target Start/End: Complemental strand, 1181115 - 1180835
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaac 181  Q
    |||||||| || ||||||| || ||||| | ||||||| || ||||||||||   ||||||| || |||||||||||||| ||| |||| |||||||||     
T  1181115 acataatctcatataaacggtcaaaattacccaaattcatcgttaaattacatc-aacacaagttcattaaaattcaacaatacagacacaaattcgaaa 1181017  T
Q  182 a-cattacactattacacattaataaa-tatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatca 279  Q
    | |||||||||||||||| |||||||| ||| ||||||||||||||| |||||||||||||||||  ||||||| ||| || |  | |||||||||||||    
T  1181016 aacattacactattacacgttaataaaatattacacttcaacggatcggacataaagatgtaaaaggttattttcaacaatcacacgaaacatgtaatca 1180917  T
Q  280 acgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgc 361  Q
    ||||| | ||||||||| || |||||||||  ||| || |||||| || |||| | ||  |||||||||| |||||||||||    
T  1180916 acgtcacgatcatctttgactagttgtggaatatacacggtcttccaacagtcctctttcttatcctcccccaagtccacgc 1180835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 139 - 454
Target Start/End: Complemental strand, 12067608 - 12067294
Alignment:
Q  139 cacaaatttattaaaattcaacattactgacataaattcg-aacacattacactattacacattaataaatatcacacttcaacggatcagacataaaga 237  Q
    |||||||| |||||||||||||| ||| |||| ||||||| || ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  12067608 cacaaattcattaaaattcaacaatacggacacaaattcggaaaacattacactattacacgttaataaatattacacttcaacg-atcagacataaaga 12067510  T
Q  238 tgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatatt 337  Q
    |||||||  ||||||| |||||| |  | |||||||||||||||||| | || |||||| || ||||||||| |||| || |||||| ||  ||| | ||    
T  12067509 tgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaacgtcactattatctttgactagttgtggaaaatacacggtcttccaacggtcctctt 12067410  T
Q  338 ctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttgt-taagtgtgcctt 436  Q
    | |||||||||  ||||||||||| | | |  ||||||| ||||| | || |||| ||||||  | ||||||  |||||| | | ||  || | ||||||    
T  12067409 ccttatcctcc--caagtccacgcctggaatttgtactactacataatatgttctgtgatttgaaccaatattgataaagaagtcgtcaaattttgcctt 12067312  T
Q  437 caactcgtccaacttgtc 454  Q
    ||||||||||||||||||    
T  12067311 caactcgtccaacttgtc 12067294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 564
Target Start/End: Complemental strand, 25818344 - 25818294
Alignment:
Q  515 aactggaacttgtgcatcttcaaacatgtttcacttca-aaaaatataatg 564  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  25818344 aactggatcttgtgcatcttcagacatgtttcacttcacaaaaatataatg 25818294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 129 - 464
Target Start/End: Original strand, 29248723 - 29249063
Alignment:
Q  129 ttacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcag 228  Q
    |||||||||||||||||| ||| |||||||||||||| |||| ||||| ||| ||||||||||||||||| || |||||||| ||||||||| |||||||    
T  29248723 ttacacataacacaaattcatttaaattcaacattacggacacaaattggaa-acattacactattacacgttcataaatattacacttcaatggatcag 29248821  T
Q  229 acataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaa 328  Q
    ||||||||||| ||||| ||||||| |||||||||  ||||||||||| ||||||| | ||||||||  | ||||  |||| |||| |  |||||| |||    
T  29248822 acataaagatgcaaaatgttattttcaaccattaaattaaacatgtaaccaacgtctctatcatcttctataagtgttggaaaatacattgtcttctaaa 29248921  T
Q  329 agtcata-----ttctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttg 423  Q
    |||| ||     ||| |||| |||| |||||||||| ||| |||||| | ||  |||||||||| |||||||||||||| ||||||  | ||||||||||    
T  29248922 agtcctattcctttccttattctccgtcaagtccacacatggcacatatgctcctacatgagatgttctttgattttcaccaatatcgacaaagtatttg 29249021  T
Q  424 ttaag-tgtgccttcaactcgtccaacttgtcagtgggggtt 464  Q
    || || ||||||||||||||||||||||||||  ||||||||    
T  29249022 ttgagttgtgccttcaactcgtccaacttgtcgatgggggtt 29249063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 78 - 461
Target Start/End: Complemental strand, 44226080 - 44225701
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattc 177  Q
    |||||||||||| |||||||||| || ||||| | ||||||   | ||||||||||   |||||||||| |||||||||||||| ||| |||| ||||||    
T  44226080 aatcacataatctcacataaacggtcaaaattacccaaattaaacgttaaattacatc-aacacaaattcattaaaattcaacaatacggacacaaattc 44225982  T
Q  178 g-aacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaa 276  Q
    | || ||||||||| |     | ||||||||||| ||||||||||||||| |||||||||||||||||  ||||||| |||||| |  | ||||||||||    
T  44225981 ggaaaacattacacaa-----cgttaataaatattacacttcaacggatcggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaa 44225887  T
Q  277 tcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtacta 376  Q
    |||||||| | ||||||||| || ||||||||| |||| || |||||| ||  ||| | ||| |||||||||| ||||||||||| | | || |||||||    
T  44225886 tcaacgtcactatcatctttgactagttgtggaaaatacacggtcttccaacggtcctcttccttatcctcccccaagtccacgcctggaacttgtacta 44225787  T
Q  377 ttacatgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggg 461  Q
     ||||| | || |||| ||||||  | ||||||| |||||| | | || ||| | |||||||||||||||||||||||| ||||||    
T  44225786 ctacataatatgttctgtgatttgaaccaatatggataaagaagtcgtcaagttttgccttcaactcgtccaacttgtcggtgggg 44225701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 394 - 585
Target Start/End: Complemental strand, 12869333 - 12869143
Alignment:
Q  394 tgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctttctcacgc 492  Q
    ||||||||| || |||| ||||| ||| |||||||| ||| ||||||||||||||  ||||| |||||| |||||||||  |||||||||||| ||||      
T  12869333 tgattttcaccagtatggataaaatatctgttaagtcgtgtcttcaactcgtccat-ttgtcggtgggg-ttaaaaagagattaatcttctttttcacag 12869236  T
Q  493 tctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtatgaaaataa 585  Q
       ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| |||||    
T  12869235 cgacgtatcagacatgagcttcaactggaacatgtgcatcttcagacatgtttcacttcacaaaatataatggaatgacaagtatgagaataa 12869143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 78 - 226
Target Start/End: Complemental strand, 12869532 - 12869384
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattc 177  Q
    ||||||||||||||| |||||||||| ||||| |||||| ||||| ||||||||||||||||| ||||| ||||||||| |  ||||  |||| ||||||    
T  12869532 aatcacataatcgcatataaacgatccaaattacacaaactcgtcgttaaattacacataacataaattcattaaaattgattattatggacacaaattc 12869433  T
Q  178 gaacacattacactattacacattaataaatatcacacttcaacggatc 226  Q
     |||||||||||||||||| | ||||||||||| ||||||||| |||||    
T  12869432 aaacacattacactattacgcgttaataaatattacacttcaatggatc 12869384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 26154181 - 26154058
Alignment:
Q  86 aatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacacat 185  Q
    |||| ||||||||||||| ||||| ||||||||| || ||||||||||||||||||||||| ||||||||||||| |||  |||| ||||||||||||||    
T  26154181 aatcacacataaacgatccaaattacacaaattcatcgttaaattacacataacacaaattcattaaaattcaacgttagagacacaaattcgaacacat 26154082  T
Q  186 tacactattacacattaataaata 209  Q
    |||| |||||||| ||||||||||    
T  26154081 tacattattacacgttaataaata 26154058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 271 - 400
Target Start/End: Complemental strand, 26153643 - 26153514
Alignment:
Q  271 atgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacat 370  Q
    |||||||||| ||||| ||||||||  | |||||||||| ||||||| |||||| ||||||||| |||||||||||||| |||||||| ||||  |||||    
T  26153643 atgtaatcaatgtcgctatcatcttcgataagttgtggaaaatatacggtcttccaaaagtcatcttctttatcctcccccaagtccatgcatgacacat 26153544  T
Q  371 gtactattacatgagatattctttgatttt 400  Q
    |||||  |||||||||||||||||||||||    
T  26153543 gtactcctacatgagatattctttgatttt 26153514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 577
Target Start/End: Complemental strand, 26152247 - 26152099
Alignment:
Q  429 tgtgccttcaactcgtccaacttgtcagtgggggttaaaaa-gaccttaatcttctttctcacgct-ctcgtattagacatgagcttcaactggaacttg 526  Q
    |||| ||| |||||||| | ||||||||||||||||||||| ||| |||||||||||| ||||||  |||  |||  |||||| |||||||| |||| |     
T  26152247 tgtgtcttaaactcgtctagcttgtcagtgggggttaaaaaagactttaatcttctttttcacgcggctc--attgaacatgatcttcaactcgaaccta 26152150  T
Q  527 tgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtat 577  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  26152149 tgcatcttcagacatgtttcacttcacaaaatataatggaataacaagtat 26152099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 212 - 354
Target Start/End: Complemental strand, 23943216 - 23943074
Alignment:
Q  212 acacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggata 311  Q
    ||||||||||||||| |||| ||||||  ||| | ||||| | |||||||| |||||||||| ||||||| |||| ||||||||| | ||||||||||||    
T  23943216 acacttcaacggatcggacaaaaagatacaaattgttattctcaaccattaccctaaacatgaaatcaacctcgctatcatctttgagaagttgtggata 23943117  T
Q  312 atatacagtcttcaaaaagtcatattctttatcctccctcaag 354  Q
    ||| || |||||| | ||||| | ||| |||||||||| ||||    
T  23943116 atacacggtcttccagaagtcctcttccttatcctcccccaag 23943074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 288 - 471
Target Start/End: Complemental strand, 24503927 - 24503743
Alignment:
Q  288 atcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacatgagat 387  Q
    ||||||||| | |||||||||| ||||||| |||||  |||| || | ||| |||||||||| ||||||||||| | |||||| ||||||||||| | ||    
T  24503927 atcatctttgagaagttgtggaaaatatacggtctttcaaaattcctcttccttatcctcccccaagtccacgcttggcacatctactattacatcacat 24503828  T
Q  388 attctttgattttcatcaatatgaataaagtatttgttaagtgtgc-cttcaactcgtccaacttgtcagtgggggttaaaaaga 471  Q
     |||||||||||  | ||||||| |||||| | | || |||| | | ||||||| ||||||||||||| |||||| ||| |||||    
T  24503827 gttctttgatttgaaccaatatggataaagaagtcgtcaagttttctcttcaacacgtccaacttgtcggtggggtttacaaaga 24503743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 2986956 - 2987028
Alignment:
Q  47 attgaatcggattacgccagtttaacaacataatcacataatcgcacataaacgatctaaattgcacaaattc 119  Q
    ||||||||| |||| || ||||||||| |||||||||||||||  |||||||||||| ||||| |||||||||    
T  2986956 attgaatcgaattaggctagtttaacatcataatcacataatcatacataaacgatccaaattacacaaattc 2987028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 158
Target Start/End: Original strand, 12168716 - 12168783
Alignment:
Q  91 cacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattca 158  Q
    |||||||||| || ||||| ||||||||| || |||||||||||| |||||||||| |||||||||||    
T  12168716 cacataaacggtcaaaattacacaaattcatcgttaaattacacacaacacaaattcattaaaattca 12168783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 29256151 - 29256244
Alignment:
Q  26 acccgtaatcttaatacactcat---tgaatcggattacgccagtttaacaacataatcacataatcgcacataaacgatctaaattgcacaaa 116  Q
    |||||||||||| | ||||||||   |||| || |||||||||||||||||||| ||||||| ||||| || ||||||||| ||||| ||||||    
T  29256151 acccgtaatctttacacactcataattgaaccgaattacgccagtttaacaacaaaatcacacaatcgtacgtaaacgatccaaattacacaaa 29256244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 515 - 564
Target Start/End: Original strand, 2368624 - 2368673
Alignment:
Q  515 aactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatg 564  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||||    
T  2368624 aactggatcttgtgcatcttcagacatgtttcacttcacaaaatataatg 2368673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 10526184 - 10526310
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcgaac 181  Q
    |||||||| |||||||||| |   |||| | ||||||| || |||||||||| | |||||||||| |||||||||||| | ||| |||| |||||||| |    
T  10526184 acataatctcacataaacggttcgaattacccaaattcatcgttaaattacata-aacacaaattcattaaaattcaataatacagacacaaattcgatc 10526282  T
Q  182 acattacactattacacattaataaata 209  Q
    | |||||  ||||| || ||||||||||    
T  10526283 aaattacgatattaaacgttaataaata 10526310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 10526761 - 10526838
Alignment:
Q  201 taataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatc 278  Q
    |||||||||| ||||||||||| ||| |||||||||| ||||||  ||||||| |||||| |  | ||||||||||||    
T  10526761 taataaatattacacttcaacgaatcggacataaagaagtaaaaggttattttcaaccatcacgcgaaacatgtaatc 10526838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 557
Target Start/End: Complemental strand, 23942904 - 23942870
Alignment:
Q  523 cttgtgcatcttcaaacatgtttcacttcaaaaaa 557  Q
    |||||||||||||| ||||||||||||||||||||    
T  23942904 cttgtgcatcttcagacatgtttcacttcaaaaaa 23942870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 126 - 471
Target Start/End: Complemental strand, 28759064 - 28758715
Alignment:
Q  126 aaattacacataacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggat 225  Q
    ||||||||||||||||||||| ||| ||||||| || ||  |||| |||||||||||||||| |||||||||| || || ||||| ||||||||||||||    
T  28759064 aaattacacataacacaaattcatttaaattcatcactatagacacaaattcgaacacattatactattacacgttcattaatattacacttcaacggat 28758965  T
Q  226 cagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttca 325  Q
    |||||||||||||||||| | ||||  | ||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||| || |||||      
T  28758964 cagacataaagatgtaaagtgttatcctcaaccatttacctaaacatgtaatcaacgtcgctatcatctttgagaagttgtggataatacacggtctttc 28758865  T
Q  326 aaaagtcatattctttatcctccctcaagtccacgcat---agcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtattt 422  Q
    | ||||  |  || |||||||||| ||||| ||||| |    |||||| |||||| |||| | || |||| ||||||  | ||||||| |||||| | |     
T  28758864 agaagtattcatcattatcctcccccaagtacacgcctcccggcacatttactatcacatcacatgttctatgatttgaaccaatatggataaagaagtc 28758765  T
Q  423 gttaag-tgtgccttcaactcgtccaacttgtcagtgggggttaaaaaga 471  Q
    || ||| | |||||||||||| ||||||||||| |||||| ||| |||||    
T  28758764 gtcaagttttgccttcaactcatccaacttgtcggtggggtttacaaaga 28758715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 82 - 461
Target Start/End: Complemental strand, 19379826 - 19379446
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aa 180  Q
    |||||||| |||| ||||| || ||||| | ||||||| || ||||||||||   |||||||||| |||||||||||||| ||| |||| ||||||| ||    
T  19379826 acataatctcacacaaacggtcaaaattacccaaattcatcgttaaattacatc-aacacaaattcattaaaattcaacaatacagacacaaattcggaa 19379728  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     | ||||||||||||||| |||| |||| | ||||||||||||||| |||||||||||||||||  ||||||| || ||| |  | ||||||||||||||    
T  19379727 aatattacactattacacgttaaaaaatgttacacttcaacggatcggacataaagatgtaaaaggttattttcaagcatcacgcgaaacatgtaatcaa 19379628  T
Q  281 cgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattac 380  Q
    |||| | ||||||||| || ||||||||| |||| || |||||| ||  ||||| ||| |||||||||| |||| |||||| | | || ||||||| |||    
T  19379627 cgtcactatcatctttgactagttgtggaaaatacacggtcttccaacggtcatcttccttatcctcccccaagcccacgcctggaacttgtactactac 19379528  T
Q  381 atgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgggg 461  Q
    || | || |||| ||||||  | ||| ||| |||||  | | || ||| | |||||||||||||||||||||||| ||||||    
T  19379527 ataatatgttctgtgatttgaaccaacatggataaataagtcgtcaagttttgccttcaactcgtccaacttgtcggtgggg 19379446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 113 - 382
Target Start/End: Original strand, 9827155 - 9827424
Alignment:
Q  113 caaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aacacattacactattacacattaataaatatc 211  Q
    ||||||| || |||||||||| | | |||||||| |||||||||||||| |||  ||| ||||||| || ||||||||||||||||| | ||| |||||     
T  9827155 caaattcatcgttaaattacata-agcacaaattcattaaaattcaacaatacatacacaaattcggaaaacattacactattacacttaaattaatatt 9827253  T
Q  212 acacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggata 311  Q
    ||||||||||||||| |||| ||||||  ||| | ||||| | |||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||    
T  9827254 acacttcaacggatcggacaaaaagatacaaagtgttattctcaaccattaacctaaacatgtaatcaacgtcgctatcatctttgagaagttgttgata 9827353  T
Q  312 atatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacat 382  Q
    ||| ||||||||| | ||||| | ||| ||||||| || ||||||||||| |  ||||| |||||| ||||    
T  9827354 atacacagtcttccagaagtcttcttccttatcctgccccaagtccacgcctgacacatttactatgacat 9827424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 167 - 415
Target Start/End: Complemental strand, 35004387 - 35004139
Alignment:
Q  167 gacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacct 266  Q
    |||| ||||||||| | |||||  |||||||| ||||||||||| |||||||||| |||| |||||||||||||| ||| ||||| | |||||| |  |     
T  35004387 gacacaaattcgaataaattacgatattacacgttaataaatattacacttcaacagatcggacataaagatgtagaatgttattctcaaccatcacgcg 35004288  T
Q  267 aaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagc 366  Q
    |||||||||||||||||||| ||||| ||| |||||||||| | |||| || |||||| ||||||| | ||| |||||||||| ||||||||| | | ||    
T  35004287 aaacatgtaatcaacgtcgctatcatatttgacaagttgtgaaaaatacacggtcttccaaaagtcttcttccttatcctcccccaagtccactcctggc 35004188  T
Q  367 acatgtactattacatgagatattctttgattttcatcaatatgaataa 415  Q
    || ||||||| ||||| | || |||| ||||||  ||||||||| ||||    
T  35004187 acttgtactactacataacatgttctatgatttgaatcaatatggataa 35004139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 148 - 360
Target Start/End: Original strand, 22728332 - 22728544
Alignment:
Q  148 attaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatat 247  Q
    |||||||||||| | |||  ||| ||||||||||| | |||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |    
T  22728332 attaaaattcaaaaatacgaacacaaattcgaacaaaatacaatattacacgttaataaatattacacttcaacggatcggacataaagatgtaaaatgt 22728431  T
Q  248 tatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctc 347  Q
    |||||| ||  ||||  |||||||||  |||||| | || ||||||||| | |||| ||||| |||| ||||||||| ||||||| | ||| || |||||    
T  22728432 tattttcaataattaggctaaacatgacatcaacattgctatcatctttgagaagtagtggaaaatacacagtcttccaaaagtcctcttccttctcctc 22728531  T
Q  348 cctcaagtccacg 360  Q
    || ||||||||||    
T  22728532 ccccaagtccacg 22728544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 82 - 382
Target Start/End: Original strand, 26224580 - 26224879
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattc-gaa 180  Q
    |||||||| |||||||| | || ||||| | ||||||| |  |||||||||| | |||||||||| |||||||||||||| ||| |||| |||||| |||    
T  26224580 acataatctcacataaagg-tcaaaattacccaaattcattgttaaattacata-aacacaaattcattaaaattcaacaatacagacacaaattcagaa 26224677  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     | |||||||| |||||| | || |||||  ||||||||||||||| |||| ||||||  ||| | | ||| | |||||| |||||||||||||||||||    
T  26224678 aatattacactgttacacttaaacaaatactacacttcaacggatcggacaaaaagatacaaagtgtaattctcaaccatgaacctaaacatgtaatcaa 26224777  T
Q  281 cgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattac 380  Q
    |||| | ||||||||  ||||||| | || |||| |  |||||| ||||||| | ||| |||||||| | ||||||||||| |  ||||| |||||| ||    
T  26224778 cgtcactatcatcttcgacaagttctagaaaatacaaggtcttccaaaagtcctcttccttatcctctcccaagtccacgcctgacacatttactatcac 26224877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 148 - 278
Target Start/End: Complemental strand, 36342563 - 36342433
Alignment:
Q  148 attaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatat 247  Q
    ||||||||||||||||||||||| |||||  |||| |||| ||| || ||  ||||||||||| ||| ||||| ||||   ||| |||||||||| || |    
T  36342563 attaaaattcaacattactgacacaaatttaaacatattatactttttcatgttaataaatattacatttcaatggatagaacacaaagatgtaatatgt 36342464  T
Q  248 tatttttaaccattaacctaaacatgtaatc 278  Q
    |||||||||||||||||||||||||||||||    
T  36342463 tatttttaaccattaacctaaacatgtaatc 36342433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 19478936 - 19479016
Alignment:
Q  47 attgaatcggattacgccagtttaacaacataatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaa 127  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| |||||||    
T  19478936 attgaatcgaattacaccagtttaacaccataatcacataatcacacataaacgatccaaattacacaaattcatcattaa 19479016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 361 - 578
Target Start/End: Complemental strand, 36342336 - 36342118
Alignment:
Q  361 catagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgccttcaactcgtccaacttgtcagtgg 459  Q
    |||||||||||||| | || |  |||| |||||||||||| | ||||||| |  |||||||||||||| |||| ||||||| ||| ||| ||||  ||||    
T  36342336 catagcacatgtacaaatatacaagatgttctttgatttttaccaatatggacgaagtatttgttaagttgtgacttcaacccgttcaatttgttcgtgg 36342237  T
Q  460 gggttaaaaagaccttaatcttctttctcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaata 559  Q
    ||||||| |||||||| || || ||  ||  |   | ||||| ||||||| ||||||||  ||| |||||||||||| ||||||||||||||| | ||      
T  36342236 gggttaagaagaccttcatatttttcttcgtggcgtagtattggacatgaccttcaacttcaacatgtgcatcttcagacatgtttcacttcacagaagt 36342137  T
Q  560 taatggaataacaagtatg 578  Q
    | ||| |||||||||||||    
T  36342136 ttatgtaataacaagtatg 36342118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 570
Target Start/End: Complemental strand, 19507164 - 19506970
Alignment:
Q  378 tacatgagatattctttgattttc-atcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagacctt 475  Q
    |||||||||| ||||||||||||| | ||| ||  | ||| ||| |||||||| ||||||||||||| | ||||||||| |||||||||||||| |||||    
T  19507164 tacatgagatgttctttgattttccaccaagattgacaaaatatctgttaagttgtgccttcaactcattcaacttgtcggtgggggttaaaaaaacctt 19507065  T
Q  476 aatcttctttc-tcacgctctcgtattagacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataa 570  Q
    |||   ||| | | | |     |||| |||||||||||||||||  ||||| |||||||||| ||||||||||||||| ||||  | |||||||||    
T  19507064 aat-gacttgcttaaagaagaagtatcagacatgagcttcaacttcaacttatgcatcttcagacatgtttcacttcataaaagtttatggaataa 19506970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 278
Target Start/End: Complemental strand, 19507328 - 19507225
Alignment:
Q  175 ttcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgt 274  Q
    |||||||| |||||||| |||| | | |||| |||| ||||||||||||  | |||||||| |||||  |||||||||| |||||| |||||||| ||||    
T  19507328 ttcgaacatattacactcttactcgtcaatacatattacacttcaacggggcggacataaatatgtaggatattattttcaaccatcaacctaaaaatgt 19507229  T
Q  275 aatc 278  Q
    ||||    
T  19507228 aatc 19507225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 378 - 484
Target Start/End: Original strand, 41634286 - 41634392
Alignment:
Q  378 tacatgagatattctttgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagacctta 476  Q
    |||||||||| || ||| ||||||| ||| ||| ||||||||| | |||| | ||| ||||||||| |||||||| || |||||||||||||||||||||    
T  41634286 tacatgagatgtttttt-attttcaccaagatggataaagtatcttttaaattgtgtcttcaactcatccaacttatcggtgggggttaaaaagacctta 41634384  T
Q  477 atcttctt 484  Q
    ||| ||||    
T  41634385 atcatctt 41634392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 564
Target Start/End: Complemental strand, 35004040 - 35003990
Alignment:
Q  515 aactggaacttgtgcatcttcaaacatgtttcacttca-aaaaatataatg 564  Q
    ||||||| |||||||||||||| |||||| |||||||| ||||||||||||    
T  35004040 aactggatcttgtgcatcttcagacatgtatcacttcacaaaaatataatg 35003990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 524 - 557
Target Start/End: Original strand, 9827560 - 9827593
Alignment:
Q  524 ttgtgcatcttcaaacatgtttcacttcaaaaaa 557  Q
    ||||||||||||| ||||||||||||||||||||    
T  9827560 ttgtgcatcttcagacatgtttcacttcaaaaaa 9827593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 567
Target Start/End: Original strand, 22728700 - 22728753
Alignment:
Q  515 aactggaacttgtgcatcttcaaacatgtttcacttca-aaaaatataatggaa 567  Q
    ||||||| ||||||||||||||   ||||||||||||| |||||||||||||||    
T  22728700 aactggatcttgtgcatcttcaggtatgtttcacttcagaaaaatataatggaa 22728753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 28759217 - 28759168
Alignment:
Q  78 aatcacataatcgcacataaacgatctaaattgcacaaattcgtcattaa 127  Q
    |||||||||||| || |||||||||| ||||| |||||||||||| ||||    
T  28759217 aatcacataatcacatataaacgatccaaattacacaaattcgtcgttaa 28759168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 82 - 359
Target Start/End: Complemental strand, 1031339 - 1031062
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aa 180  Q
    |||||||| |||||||||| || ||||| | ||||||| || ||||||||||   |||||||||| |||||||||||||  ||| |||| ||||||| ||    
T  1031339 acataatctcacataaacggtcaaaattacccaaattcatcgttaaattacatc-aacacaaattcattaaaattcaacgatacggacacaaattcggaa 1031241  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     ||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||  ||||||| |||||| |  | ||||||||||||||    
T  1031240 aacattacactattacacgttaataaatattacacttcaacgcatcggacataaagatgtaaaaggttattttcaaccatcacgcgaaacatgtaatcaa 1031141  T
Q  281 cgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccac 359  Q
    |||| | ||||||||| || ||||||||| |||| || |||||  ||  ||| | ||| |||||||||| |||||||||    
T  1031140 cgtcactatcatctttgactagttgtggaaaatacacggtcttttaacggtcctcttccttatcctcccccaagtccac 1031062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 137 - 451
Target Start/End: Original strand, 7648023 - 7648334
Alignment:
Q  137 aacacaaatttattaaaattcaacattactgacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaag 236  Q
    |||||||||| |||||||| |||||| ||  ||| ||||| ||||||||||||||||      ||||||||||| ||||||||| ||| |  |||  ||     
T  7648023 aacacaaattcattaaaatgcaacatcacgaacacaaatttgaacacattacactatg-----ttaataaatattacacttcaatggagcgaacacgaat 7648117  T
Q  237 atgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatcttta-acaagttgtggataatatacagtcttcaaaaagtcata 335  Q
    || |||||| ||||||| || ||||||||||||||||||||||||||||||||||||   | | || ||||||| |||| |  |||||| ||  ||  |     
T  7648118 atataaaatgttattttcaagcattaacctaaacatgtaatcaacgtcgccatcatcaaaatataacttgtggaaaatacatggtcttccaactgttttc 7648217  T
Q  336 ttctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttcatcaatatgaataaagtatttgttaag-tgtgcc 434  Q
     |||||||||||||||| || ||| ||| | || ||||| | |||||||||| || ||| ||||||| ||||||| | ||| ||||||||||| ||||||    
T  7648218 atctttatcctccctcaggttcacacatggtacttgtacaaatacatgagatgttatttaattttcaccaatatggacaaattatttgttaagctgtgcc 7648317  T
Q  435 ttcaactcgtccaactt 451  Q
    ||||||||  |||||||    
T  7648318 ttcaactcacccaactt 7648334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 202 - 442
Target Start/End: Complemental strand, 8356810 - 8356569
Alignment:
Q  202 aataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaacgtcgccatcatctttaacaa 301  Q
    |||| |||| ||||||||| ||| | |||| ||| |||||| |||||||||  |||||| ||||||||||||||||| || ||||||||||| |  | ||    
T  8356810 aatacatattacacttcaatggagcggacacaaatatgtaagatattatttccaaccatcaacctaaacatgtaatctacatcgccatcatcatggataa 8356711  T
Q  302 gttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtccacgcatagcacatgtactattacatgagatattctttgattttc 401  Q
     || |||| |||| || |||||| ||   || |  |||||||||  | |||  | |||||||  ||| ||||| | |||||||||| || ||||||||||    
T  8356710 cttttggaaaataaacggtcttccaaccatcttcatctttatccgtcatcatattcacgcatgacacctgtacaaatacatgagatgttatttgattttc 8356611  T
Q  402 atcaatatgaataaagtatttgttaag-tgtgccttcaactc 442  Q
    | ||| ||||| ||| ||| ||||||| ||||||||||||||    
T  8356610 accaagatgaacaaaatatctgttaagttgtgccttcaactc 8356569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 585
Target Start/End: Original strand, 2289264 - 2289347
Alignment:
Q  502 agacatgagcttcaactggaacttgtgcatcttcaaacatgtttcacttcaaaaaatataatggaataacaagtatgaaaataa 585  Q
    |||||||| ||||||||  |||||||||||||||| | ||||||||||||| ||||  | | |||||||||||||||| |||||    
T  2289264 agacatgatcttcaacttcaacttgtgcatcttcagatatgtttcacttcacaaaagtttaaggaataacaagtatgataataa 2289347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 570
Target Start/End: Original strand, 7648407 - 7648450
Alignment:
Q  527 tgcatcttcaaacatgtttcacttcaaaaaatataatggaataa 570  Q
    |||||||||||||||||||||||||| ||||| |||||||||||    
T  7648407 tgcatcttcaaacatgtttcacttcacaaaatttaatggaataa 7648450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 564
Target Start/End: Complemental strand, 1030897 - 1030855
Alignment:
Q  523 cttgtgcatcttcaaacatgtttcacttca-aaaaatataatg 564  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  1030897 cttgtgcatcttcacacatgtttcacttcacaaaaatataatg 1030855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 82 - 358
Target Start/End: Complemental strand, 33219 - 32943
Alignment:
Q  82 acataatcgcacataaacgatctaaattgcacaaattcgtcattaaattacacataacacaaatttattaaaattcaacattactgacataaattcg-aa 180  Q
    |||||||| |||||||||| || ||||| | ||||||| || |||||||||| | |||||| ||| ||||||| |||||| ||| || ||||||||| ||    
T  33219 acataatctcacataaacggtcaaaattacccaaattcatcgttaaattacata-aacacatattcattaaaaatcaacaatacggatataaattcggaa 33121  T
Q  181 cacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacctaaacatgtaatcaa 280  Q
     ||||||||||||||||| | |||||| || ||||| |||| |||| |||| ||||||  ||| | ||||| | ||| ||||||||||||||||||||||    
T  33120 aacattacactattacacttaaataaaaattacactacaacagatcggacaaaaagatacaaagtgttattctcaactattaacctaaacatgtaatcaa 33021  T
Q  281 cgtcgccatcatctttaacaagttgtggataatatacagtcttcaaaaagtcatattctttatcctccctcaagtcca 358  Q
    |||||| ||| ||||| | || |||||||||||| || ||||||   ||||| | ||| |||||||||| ||||||||    
T  33020 cgtcgctatcgtctttgaaaaattgtggataatacacggtcttcctgaagtcttcttccttatcctcccccaagtcca 32943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 45708 - 45834
Alignment:
Q  167 gacataaattcgaacacattacactattacacattaataaatatcacacttcaacggatcagacataaagatgtaaaatattatttttaaccattaacct 266  Q
    |||| ||||||||||| ||||||||||||||| | |||| |||| ||||||||| ||| | |||| ||||||||||||| ||||||| ||||||||||||    
T  45708 gacacaaattcgaacatattacactattacacgtcaatacatattacacttcaatggagcggacacaaagatgtaaaatgttattttcaaccattaacct 45807  T
Q  267 aaacatgtaatcaacgtcgccatcatc 293  Q
    |||||||||||| || |||||||||||    
T  45808 aaacatgtaatctacatcgccatcatc 45834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 484
Target Start/End: Original strand, 45963 - 46018
Alignment:
Q  429 tgtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatcttctt 484  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  45963 tgtgccttcaactcatccaacttgtcagtgggggttaaaaagaccttaatcgtctt 46018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 2166 - 2080
Alignment:
Q  394 tgattttcatcaatatgaataaagtatttgttaagt-gtgccttcaactcgtccaacttgtcagtgggggttaaaaagaccttaatc 479  Q
    ||||||||||||| ||| | |||||||| ||||||| |  |||||||||| ||||||||||| | | |||||||||| |||||||||    
T  2166 tgattttcatcaagatggacaaagtattcgttaagttgccccttcaactcatccaacttgtctgcgtgggttaaaaaaaccttaatc 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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