View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_low_22 (Length: 290)
Name: NF8755_low_22
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 6134467 - 6134733
Alignment:
| Q |
17 |
gttagtgtcatcttggaggatttgaatgaataattcgatgattccaagtgttgggaaagaatccttgttaacctttgttttgaaaagaccttgcttgagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134467 |
gttagtgtcatcttggaggatttgaatgaataatccgatgattccaagtgttgggaatgaatccttgttaacctttgttttgaaaagaccttgcttgagt |
6134566 |
T |
|
| Q |
117 |
gaat----atatgataaataaatggctgtgaatgtattaggtccttttggtgagatatatttactttgtcataggtctaatattcatttaggcacacaat |
212 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134567 |
gaatgaatacatgataaataaatggctgtgaatgtattaggtccttttggtgagatatatttactttgtcataggtctaatattcatttaggcacacaat |
6134666 |
T |
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| Q |
213 |
gaaaatagtatcaatttcatttcctgtcaaaaattctattcattatatttggttccttacaagtatt |
279 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6134667 |
gaaaatagtaagaatttcatttcctgtccaaaattctattcattatatttggttccttacaagtatt |
6134733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 20600650 - 20600753
Alignment:
| Q |
17 |
gttagtgtcatcttggaggatttgaatgaataattcgatgattccaagtgttgggaaagaatccttgttaacctttgttttgaaaagaccttgcttgagt |
116 |
Q |
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||||||||||||||||||||||| || ||||||| || |||||||||||||| |||| |||||||||||||||||||| | |||||||||||||| |||| |
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| T |
20600650 |
gttagtgtcatcttggaggatttaaaagaataatccggtgattccaagtgttaggaatgaatccttgttaacctttgtgtggaaaagaccttgctagagt |
20600749 |
T |
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| Q |
117 |
gaat |
120 |
Q |
| |
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|||| |
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| T |
20600750 |
gaat |
20600753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 20600781 - 20600925
Alignment:
| Q |
143 |
aatgtattaggtccttttggtgagatatatttactttgtcataggtctaa------tattcatttaggcacacaatgaaaatagtatcaatttca--ttt |
234 |
Q |
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||||||||||||| ||||||||| |||||||||||| ||| | |||||| |||||||||||||||| |||||||| ||||| ||||||| ||| |
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| T |
20600781 |
aatgtattaggtc-ttttggtgaaatatatttacttgctcacaagtctaaataaaatattcatttaggcacataatgaaaaaagtatgaatttcattttt |
20600879 |
T |
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| Q |
235 |
cctgtcaaaaattc-tattcattatatttggttccttacaagtatt |
279 |
Q |
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||| | |||||| | || ||||||||||| ||||||| |||||||| |
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| T |
20600880 |
cctataaaaaatacttactcattatatttagttccttgcaagtatt |
20600925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 47944050 - 47944000
Alignment:
| Q |
96 |
ttgaaaagaccttgcttgagtgaatatatgataaataaatggctgtgaatg |
146 |
Q |
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|||||||||||||||| ||| ||||||||||||||||| |||||||||||| |
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| T |
47944050 |
ttgaaaagaccttgctagagggaatatatgataaataactggctgtgaatg |
47944000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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