View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8755_low_26 (Length: 250)

Name: NF8755_low_26
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8755_low_26
NF8755_low_26
[»] chr6 (39 HSPs)
chr6 (61-165)||(26805215-26805322)
chr6 (60-165)||(27674915-27675023)
chr6 (127-237)||(26851152-26851262)
chr6 (1-165)||(26961825-26961992)
chr6 (188-240)||(28794889-28794941)
chr6 (189-238)||(28788867-28788916)
chr6 (189-237)||(25076334-25076382)
chr6 (189-237)||(27608749-27608797)
chr6 (189-236)||(26864092-26864139)
chr6 (130-233)||(26952264-26952367)
chr6 (188-239)||(27590611-27590662)
chr6 (189-238)||(26826305-26826354)
chr6 (189-238)||(26979892-26979941)
chr6 (189-238)||(27681466-27681515)
chr6 (189-238)||(31287058-31287107)
chr6 (50-165)||(25485704-25485822)
chr6 (43-95)||(28795196-28795248)
chr6 (197-236)||(29828489-29828528)
chr6 (188-238)||(26961593-26961643)
chr6 (127-165)||(27602134-27602172)
chr6 (127-165)||(27608531-27608569)
chr6 (188-238)||(27703845-27703895)
chr6 (127-165)||(27715911-27715949)
chr6 (189-238)||(27662845-27662894)
chr6 (188-233)||(27675205-27675250)
chr6 (189-238)||(27716129-27716178)
chr6 (188-240)||(27696219-27696271)
chr6 (189-236)||(26886593-26886640)
chr6 (57-112)||(27590464-27590519)
chr6 (127-165)||(26638116-26638154)
chr6 (108-165)||(26658696-26658756)
chr6 (127-165)||(26744082-26744120)
chr6 (108-165)||(26764667-26764727)
chr6 (127-165)||(27681671-27681709)
chr6 (189-238)||(25513357-25513406)
chr6 (188-241)||(26804995-26805048)
chr6 (50-94)||(25513663-25513707)
chr6 (50-94)||(26145785-26145829)
chr6 (43-95)||(28789172-28789224)
[»] scaffold0419 (2 HSPs)
scaffold0419 (189-236)||(10019-10066)
scaffold0419 (43-165)||(10249-10374)
[»] scaffold0277 (4 HSPs)
scaffold0277 (189-236)||(2320-2367)
scaffold0277 (189-238)||(11283-11332)
scaffold0277 (43-95)||(2012-2064)
scaffold0277 (43-95)||(10975-11027)
[»] chr4 (13 HSPs)
chr4 (197-236)||(18682392-18682431)
chr4 (197-236)||(18726668-18726707)
chr4 (197-236)||(18687288-18687327)
chr4 (197-236)||(18697076-18697115)
chr4 (197-236)||(18721747-18721786)
chr4 (198-236)||(18653152-18653190)
chr4 (197-236)||(18677233-18677272)
chr4 (122-165)||(18682168-18682211)
chr4 (122-165)||(18726444-18726487)
chr4 (122-161)||(18728947-18728986)
chr4 (127-165)||(18687065-18687103)
chr4 (198-236)||(18729170-18729208)
chr4 (122-163)||(18721525-18721566)
[»] chr1 (4 HSPs)
chr1 (189-236)||(28125322-28125369)
chr1 (197-236)||(265968-266007)
chr1 (189-236)||(28130353-28130400)
chr1 (188-233)||(26138421-26138466)
[»] scaffold0349 (2 HSPs)
scaffold0349 (127-165)||(15996-16034)
scaffold0349 (189-238)||(15767-15816)
[»] chr8 (3 HSPs)
chr8 (197-238)||(22023759-22023800)
chr8 (43-102)||(22024056-22024115)
chr8 (128-163)||(29271251-29271286)
[»] chr2 (1 HSPs)
chr2 (197-234)||(17990856-17990893)
[»] scaffold0012 (1 HSPs)
scaffold0012 (199-232)||(199500-199533)


Alignment Details
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 26805322 - 26805215
Alignment:
Q  61 agatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaatcaagatgcttaaga---tgacattcactaaagcactcaggaagaattt 157  Q
    ||||| ||||||| || |||||||||||| ||||||||||||| | ||||||||||||||||||||   |||||||||||||  ||||||||||||||||    
T  26805322 agattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgcttaagatggtgacattcactaagacactcaggaagaattt 26805223  T
Q  158 tgaaattg 165  Q
    ||||||||    
T  26805222 tgaaattg 26805215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 165
Target Start/End: Original strand, 27674915 - 27675023
Alignment:
Q  60 aagatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaatcaagatgcttaagatg---acattcactaaagcactcaggaagaatt 156  Q
    |||||||||||||| || |||||||||||| ||||| | ||||| |  |||| ||||||||||||||||   ||||||||||| ||||||||||||||||    
T  27674915 aagatttggtggaatccctctaatttcctcaagagaagagcagtaatgcaaaccaagatgcttaagatggtgacattcactaaggcactcaggaagaatt 27675014  T
Q  157 ttgaaattg 165  Q
    |||||||||    
T  27675015 ttgaaattg 27675023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 26851262 - 26851152
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattgacgcttgttattcttaacacaccaagttcattgagattttgaaatgaaaatggcaattctc 226  Q
    ||||||||||||| |||||| ||||||||||| ||||||||   || ||| |||||   || ||||||| ||||||||| ||||||| ||||||||||||    
T  26851262 tgacattcactaaggcactcgggaagaatttttaaattgacaaatgatatgcttaagtgacgaagttcactgagatttttaaatgaagatggcaattctc 26851163  T
Q  227 ttatggaagta 237  Q
     ||||||||||    
T  26851162 ctatggaagta 26851152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 26961992 - 26961825
Alignment:
Q  1 aatagccttcttctagtttccaaactcagtgattcaca-atcaattgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagagatgtg 99  Q
    ||||||||||||||| |||||||||||| |||||||||  |||| ||| ||||| | | ||||||||||||||| || |||||||||||| ||| |  ||    
T  26961992 aatagccttcttctactttccaaactcaatgattcacatctcaa-tgcagaaagccgtccaagatttggtggaatccctctaatttcctcaagaaacttg 26961894  T
Q  100 cagtcaaacaaatcaagatgcttaaga---tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||  |||  |||| | |  ||||   ||||||||||||| |||||| ||||||||||||||||||    
T  26961893 cagtcatccaacacaagctccccaagacggtgacattcactaaggcactcgggaagaattttgaaattg 26961825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 28794941 - 28794889
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtataa 240  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  28794941 caagttcattgagattttgaaatgaagatggcaattctcctatggaagtataa 28794889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 28788916 - 28788867
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  28788916 aagttcactgagattttgaaatgaagatggcaattctcttatggaagtat 28788867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 25076382 - 25076334
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagta 237  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  25076382 aagttcactgagattttgaaatgaaaatggcaattctcctatggaagta 25076334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 27608749 - 27608797
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagta 237  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  27608749 aagttcactgagattttgaaatgaaaatggcagttctcttatggaagta 27608797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 26864139 - 26864092
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  26864139 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagt 26864092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 26952367 - 26952264
Alignment:
Q  130 cattcactaaagcactcaggaagaattttgaaattgacgcttgttattcttaacacaccaagttcattgagattttgaaatgaaaatggcaattctctta 229  Q
    |||||||||| |||||| |||||||||||||||||| | ||   |||| ||||   || ||||||| ||||||||  |||||||||||||||||||| ||    
T  26952367 cattcactaaggcactcgggaagaattttgaaattgtcactaaatattattaagcgacgaagttcactgagatttccaaatgaaaatggcaattctccta 26952268  T
Q  230 tgga 233  Q
    ||||    
T  26952267 tgga 26952264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 27590611 - 27590662
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtata 239  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  27590611 caagttcactgagattttgaaatgaagatggcaattctcgtatggaagtata 27590662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 26826354 - 26826305
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||||||    
T  26826354 aagttcattgagatttcgaaatgaagatggcaattctcctatggaagtat 26826305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 26979941 - 26979892
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  26979941 aagttcactgagatattgaaatgaaaatggcaattctcctatggaagtat 26979892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 27681515 - 27681466
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| |||||||||||||||||||||||| ||||| |||||||||||    
T  27681515 aagttcactgagattttgaaatgaaaatggcagttctcctatggaagtat 27681466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 31287107 - 31287058
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  31287107 aagttcactgagattttgaaatgaagatggcaattctcctatggaagtat 31287058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 25485822 - 25485704
Alignment:
Q  50 aaagactttcaagatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaatcaagatgcttaaga---tgacattcactaaagcactc 146  Q
    |||| ||||||||||||||||||| || |||||||||||| ||||   |||| |    ||||| |||||||||||||   |||||||||| || ||||||    
T  25485822 aaagcctttcaagatttggtggaatccctctaatttcctcaagagccttgcacttcttcaaataaagatgcttaagacggtgacattcaccaaggcactc 25485723  T
Q  147 aggaagaattttgaaattg 165  Q
     ||||||||| ||||||||    
T  25485722 gggaagaattgtgaaattg 25485704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 28795248 - 28795196
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagaga 95  Q
    ||||| ||||| ||||||||||||||||||| || ||||||||||||||||||    
T  28795248 attgcagaaagcctttcaagatttggtggaatccctctaatttcctcgagaga 28795196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 29828528 - 29828489
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  29828528 tgagattttgaaatgaaaatggcaattcttttatggaagt 29828489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 26961643 - 26961593
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    |||||||| |||||| ||||||||||||||| ||||||| |||||||||||    
T  26961643 caagttcactgagatattgaaatgaaaatggaaattctcctatggaagtat 26961593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 27602134 - 27602172
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  27602134 tgacattcactaaggcactcaggaagaattttgaaattg 27602172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 27608531 - 27608569
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  27608531 tgacattcactaaggcactcaggaagaattttgaaattg 27608569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 27703845 - 27703895
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    |||||||| |||||||||||||||||||||||| ||||| ||| |||||||    
T  27703845 caagttcactgagattttgaaatgaaaatggcagttctcctatagaagtat 27703895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 27715911 - 27715949
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  27715911 tgacattcactaaggcactcaggaagaattttgaaattg 27715949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 27662845 - 27662894
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||||||||||||| |||||||||||||| ||||  |||||||||||    
T  27662845 aagttcattgagatttttaaatgaaaatggcatttcttctatggaagtat 27662894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 27675205 - 27675250
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatgga 233  Q
    |||||||| ||||||||||||||||| |||||||||||| ||||||    
T  27675205 caagttcactgagattttgaaatgaagatggcaattctcctatgga 27675250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 27716129 - 27716178
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| | |||||||||||||||||||||| ||||| |||||||||||    
T  27716129 aagttcactaagattttgaaatgaaaatggcagttctcctatggaagtat 27716178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 27696219 - 27696271
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtataa 240  Q
    |||||||| |||||||||||||||||||||||| || || ||||||| |||||    
T  27696219 caagttcactgagattttgaaatgaaaatggcagttttcctatggaaatataa 27696271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 26886640 - 26886593
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||| ||||||||| |||||||||||||||| ||| |||||||||    
T  26886640 aagttcactgagattttcaaatgaaaatggcaatcctcctatggaagt 26886593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 27590464 - 27590519
Alignment:
Q  57 ttcaagatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaat 112  Q
    ||||||||||||||||| || |||||||||||| |||||| |||| ||| ||||||    
T  27590464 ttcaagatttggtggaatccctctaatttcctcaagagatttgcaatcatacaaat 27590519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 26638154 - 26638116
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  26638154 tgacatacactaaggcactcaggaagaattttgaaattg 26638116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 26658756 - 26658696
Alignment:
Q  108 caaatcaagatgcttaaga---tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||| |||||||||||||   ||||||||||||| |||||| || |||||||||||||||    
T  26658756 caaataaagatgcttaagaaggtgacattcactaaggcactcgggtagaattttgaaattg 26658696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 26744120 - 26744082
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  26744120 tgacatacactaaggcactcaggaagaattttgaaattg 26744082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 26764727 - 26764667
Alignment:
Q  108 caaatcaagatgcttaaga---tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||| |||||||||||||   ||||||||||||| |||||| || |||||||||||||||    
T  26764727 caaataaagatgcttaagaaggtgacattcactaaggcactcgggtagaattttgaaattg 26764667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 27681709 - 27681671
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||||||||| || |||||||||||||||||||||||||    
T  27681709 tgacattcacgaaggcactcaggaagaattttgaaattg 27681671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 25513406 - 25513357
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| ||| ||||||||||||| |||||||||||  |||||||||||    
T  25513406 aagttcactgaaattttgaaatgaagatggcaattcttctatggaagtat 25513357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 26805048 - 26804995
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatggaagtataat 241  Q
    |||||||| | ||||||||||||||| || ||||||||| ||||| ||||||||    
T  26805048 caagttcactcagattttgaaatgaagatagcaattctcctatgggagtataat 26804995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 25513707 - 25513663
Alignment:
Q  50 aaagactttcaagatttggtggaaaccatctaatttcctcgagag 94  Q
    |||| ||||||||||||||||||| || |||||||||||| ||||    
T  25513707 aaagcctttcaagatttggtggaatccctctaatttcctcaagag 25513663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 26145829 - 26145785
Alignment:
Q  50 aaagactttcaagatttggtggaaaccatctaatttcctcgagag 94  Q
    |||| ||||||||||||||||||| || |||||||||||| ||||    
T  26145829 aaagcctttcaagatttggtggaatccctctaatttcctcaagag 26145785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 28789224 - 28789172
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagaga 95  Q
    ||||| ||||| ||| ||||||||||||||| || |||||||||||| |||||    
T  28789224 attgcagaaagccttgcaagatttggtggaatccctctaatttcctccagaga 28789172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 10066 - 10019
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10066 aagttcattgagattttgaaatgaagatggcaattctcttatggaagt 10019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 10374 - 10249
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagagatgtgcagtcaaacaaatcaagatgcttaaga---tgacattcactaa 139  Q
    ||||| ||||| |||||||||||||||| || || |||||||||||| |||||  |||||| |  |||   ||| |  ||||||   |||||||||||||    
T  10374 attgcagaaagcctttcaagatttggtgcaatccctctaatttcctccagagacttgcagttatccaatataaggttattaagaaggtgacattcactaa 10275  T
Q  140 agcactcaggaagaattttgaaattg 165  Q
     ||||||||||| || ||||||||||    
T  10274 ggcactcaggaataagtttgaaattg 10249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 2320 - 2367
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2320 aagttcattgagattttgaaatgaagatggcaattctcttatggaagt 2367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 11283 - 11332
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  11283 aagttcactgagattttgaaatgaagatggcaattctcttatggaagtat 11332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 2012 - 2064
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagaga 95  Q
    ||||| |||||  |||||||||||||||||| || |||||||||||| |||||    
T  2012 attgcagaaagcatttcaagatttggtggaatccctctaatttcctccagaga 2064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 10975 - 11027
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagaga 95  Q
    ||||| ||||| ||| ||||||||||||||| || |||||||||||| |||||    
T  10975 attgcagaaagccttgcaagatttggtggaatccctctaatttcctccagaga 11027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18682392 - 18682431
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18682392 tgagattttgaaatgaaaatggcaattctcttatggaagt 18682431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18726668 - 18726707
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18726668 tgagattttgaaatgaaaatggcaattctcttatggaagt 18726707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18687288 - 18687327
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18687288 tgagattttgaaatgaaaatggcaattctcttgtggaagt 18687327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18697076 - 18697115
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18697076 tgagattttgaaatgaaaatggcaattctcttgtggaagt 18697115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18721747 - 18721786
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18721747 tgagattttgaaatgaaaatggcaattctcttgtggaagt 18721786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 18653152 - 18653190
Alignment:
Q  198 gagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  18653152 gagattttgaaatgaaaatggcaattctcttgtggaagt 18653190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18677233 - 18677272
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  18677233 tgagattttgaaatgaaaatggcaattctgttgtggaagt 18677272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 18682168 - 18682211
Alignment:
Q  122 taagatgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||    
T  18682168 taaggtgacattcactaaggcactcgggaagaattttgaaattg 18682211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 18726444 - 18726487
Alignment:
Q  122 taagatgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||    
T  18726444 taaggtgacattcactaaggcactcgggaagaattttgaaattg 18726487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 18728947 - 18728986
Alignment:
Q  122 taagatgacattcactaaagcactcaggaagaattttgaa 161  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  18728947 taaggtgacattcactaaggcactcaggaagaattttgaa 18728986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Original strand, 18687065 - 18687103
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  18687065 tgacattcactaaggcactcgggaagaattttgaaattg 18687103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 18729170 - 18729208
Alignment:
Q  198 gagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  18729170 gagatattgaaatgaaaatggcaattctcttgtggaagt 18729208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 18721525 - 18721566
Alignment:
Q  122 taagatgacattcactaaagcactcaggaagaattttgaaat 163  Q
    |||| ||||||||| ||| |||||||||||||||||||||||    
T  18721525 taaggtgacattcattaaggcactcaggaagaattttgaaat 18721566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 28125322 - 28125369
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||    
T  28125322 aagttcactgagattttgaaatgaaaatggtaattctcttatggaagt 28125369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 265968 - 266007
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  265968 tgagattttgaaatgaagatggcaattctcttatggaagt 266007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 28130353 - 28130400
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagt 236  Q
    ||||||| | |||||||||||||||||||| |||||||||||||||||    
T  28130353 aagttcacttagattttgaaatgaaaatggtaattctcttatggaagt 28130400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 26138466 - 26138421
Alignment:
Q  188 caagttcattgagattttgaaatgaaaatggcaattctcttatgga 233  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||    
T  26138466 caagttcactgaaattttgaaatgaaaatggcaattctcctatgga 26138421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 16034 - 15996
Alignment:
Q  127 tgacattcactaaagcactcaggaagaattttgaaattg 165  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  16034 tgacattcactaaggcactcaggaagaattttgaaattg 15996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 15816 - 15767
Alignment:
Q  189 aagttcattgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||| | |||||||||||||||||||||| ||||| |||||||||||    
T  15816 aagttcactaagattttgaaatgaaaatggcagttctcctatggaagtat 15767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 22023800 - 22023759
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaagtat 238  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  22023800 tgagattttgaaaagaagatggcaattctcttatggaagtat 22023759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 22024115 - 22024056
Alignment:
Q  43 attgctgaaagactttcaagatttggtggaaaccatctaatttcctcgagagatgtgcag 102  Q
    ||||| ||||| ||||||||||||||||||| || |||||||||||| | |||| |||||    
T  22024115 attgcagaaagcctttcaagatttggtggaatccctctaatttcctcaacagatttgcag 22024056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 29271251 - 29271286
Alignment:
Q  128 gacattcactaaagcactcaggaagaattttgaaat 163  Q
    |||||||||||| |||||||||||||||||||||||    
T  29271251 gacattcactaaggcactcaggaagaattttgaaat 29271286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 17990856 - 17990893
Alignment:
Q  197 tgagattttgaaatgaaaatggcaattctcttatggaa 234  Q
    |||||||||||||||||||||||||||||| |||||||    
T  17990856 tgagattttgaaatgaaaatggcaattctcctatggaa 17990893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 199500 - 199533
Alignment:
Q  199 agattttgaaatgaaaatggcaattctcttatgg 232  Q
    ||||||||||||||||||||||||||| ||||||    
T  199500 agattttgaaatgaaaatggcaattcttttatgg 199533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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