View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8755_low_28 (Length: 248)
Name: NF8755_low_28
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_28 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 9897244 - 9897486
Alignment:
| Q |
6 |
aagcagagaagaaagcaagcaagaaagaagatnnnnnnnggggaactcactatagaaattgctggaggtgatattagttctgctagaagatgagttacaa |
105 |
Q |
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| T |
9897244 |
aagcagagaagaaagcaagcaagaaagaagataaaaaaaggggaactcactatagaaattgctggaggtgatattagttctgctagaagatgagttacaa |
9897343 |
T |
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| Q |
106 |
cttctattattcttttaaaaaatgattgtttctccttcttcgactcatgagactgatcttgttcattaacctaaaaatcaatatagttgaggacatttca |
205 |
Q |
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| T |
9897344 |
cttctattattcttttaaaaaatgattgtttctccttcttcgactcatgagactgatcttgttcattaacctaaaaatcaatatagttgaggacatttca |
9897443 |
T |
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| Q |
206 |
aattatcaccgtctgaaataagagttaaaggaattaaaggacc |
248 |
Q |
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| T |
9897444 |
aattatcaccgtctgaaataagagttaaaggaattaaaggacc |
9897486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 47 - 226
Target Start/End: Original strand, 9871648 - 9871827
Alignment:
| Q |
47 |
ggaactcactatagaaattgctggaggtgatattagttctgctagaagatgagttacaacttctattattcttttaaaaaatgattgtttctccttcttc |
146 |
Q |
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||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
9871648 |
ggaactcactacagaaattgctggtggtgatattaattccgctagaagatgagttagaacatctatcattcttttaaaaaatgattgtttctccttattc |
9871747 |
T |
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| Q |
147 |
gactcatgagactgatcttgttcattaacctaaaaatcaatatagttgaggacatttcaaattatcaccgtctgaaataa |
226 |
Q |
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| T |
9871748 |
gattcatgagactgatcttgttcattaacctgaaaatcaagatagttgaggacatttcaaattatcattgtctgaaataa |
9871827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 171
Target Start/End: Original strand, 9907537 - 9907659
Alignment:
| Q |
49 |
aactcactatagaaattgctggaggtgatattagttctgctagaagatgagttacaacttctattattcttttaaaaaatgattgtttctccttcttcga |
148 |
Q |
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| T |
9907537 |
aactaactgtagcaattgctggtggtgacattagttctgctagaagatgacttagaacttctatcattctattgaaaaatgattgtttctccttcttcaa |
9907636 |
T |
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| Q |
149 |
ctcatgagactgatcttgttcat |
171 |
Q |
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| T |
9907637 |
tacaattgactgatcttgttcat |
9907659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 9864779 - 9864670
Alignment:
| Q |
62 |
aattgctggaggtgatattagttctgctagaagatgagttacaacttctattattcttttaaaaaatgattgtttctccttcttcgactcatgagactga |
161 |
Q |
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| T |
9864779 |
aattgctggtggtgacattagttctgctagaagatgacttaaaacttctatcattcttttgaaaaacaattatttttccttcttcaatacaattgactga |
9864680 |
T |
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| Q |
162 |
tcttgttcat |
171 |
Q |
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|||||||||| |
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| T |
9864679 |
tcttgttcat |
9864670 |
T |
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