View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8755_low_33 (Length: 227)
Name: NF8755_low_33
Description: NF8755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8755_low_33 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35304385 - 35304614
Alignment:
| Q |
1 |
tggtttcccccaatgtttagtctaatttggttgacaa---cactatctgcattcgatgatgattgactcggattatgttgccaacatatgagagtttcat |
97 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
35304385 |
tggtttcccccaatgtttagtctaacttcgttgacaacaacactatctccatttgatgatgattgactagggttatgttgtcaacatatgagagtttcat |
35304484 |
T |
|
| Q |
98 |
acatcgttctttcaacattgccaataaaaatgttactatcctgtaacaacaaatgtatatctattaggcatagttttgttgaaaaacatgaaatcatttg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35304485 |
acatcgttctttcaacattgccaataaaaatgttactatcctgtaacaacaaatgtgtacctagtaggcatagttttgttgaaaaaaatgaaatcatttg |
35304584 |
T |
|
| Q |
198 |
tgtgggtcttgatttaacaatttatagtca |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35304585 |
tgtgggtcttgatttaacaatttatagtca |
35304614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 35304278 - 35304314
Alignment:
| Q |
94 |
tcatacatcgttctttcaacattgccaataaaaatgt |
130 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35304278 |
tcatacatcattctttcaacattgccaataaaaatgt |
35304314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University